Wall clock time and date at job start Tue Mar 31 2020 10:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 C 1.50703 * 109.47256 * 180.02562 * 20 19 18 22 22 N 1.30502 * 125.64776 * 304.69272 * 21 20 19 23 23 C 1.34126 * 109.26020 * 179.89271 * 22 21 20 24 24 C 1.34675 * 108.01735 * 0.37081 * 23 22 21 25 25 N 1.35039 * 125.65308 * 124.99838 * 21 20 19 26 26 H 0.96996 * 126.40191 * 359.97438 * 25 21 20 27 27 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 31 31 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 32 32 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 33 33 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 34 34 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 35 35 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 36 36 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 37 37 H 1.09001 * 109.47096 * 299.99723 * 20 19 18 38 38 H 1.09000 * 109.47823 * 60.00003 * 20 19 18 39 39 H 1.07998 * 125.99522 * 180.10886 * 23 22 21 40 40 H 1.07995 * 126.58895 * 179.81504 * 24 23 22 41 41 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 6 0.4306 -9.5674 -2.3663 20 6 -0.2663 -10.9228 -2.2323 21 6 -0.5022 -11.5041 -3.6026 22 7 -1.1393 -10.9168 -4.5785 23 6 -1.1538 -11.7264 -5.6478 24 6 -0.5081 -12.8617 -5.3195 25 7 -0.0945 -12.7211 -4.0222 26 1 0.3991 -13.3739 -3.5016 27 6 1.4365 -4.7345 0.2253 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5471 0.1902 31 1 4.1533 -6.7247 0.4045 32 1 2.1300 -7.9004 1.0433 33 1 0.5456 -7.0924 0.9734 34 1 0.3769 -9.4904 -0.2452 35 1 -0.1993 -8.8909 -2.9441 36 1 1.3856 -9.6982 -2.8752 37 1 0.3632 -11.5995 -1.6545 38 1 -1.2214 -10.7917 -1.7236 39 1 -1.6078 -11.5081 -6.6031 40 1 -0.3470 -13.7181 -5.9574 41 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760532738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:30 Heat of formation + Delta-G solvation = 16.248777 kcal Electronic energy + Delta-G solvation = -24098.699391 eV Core-core repulsion = 20366.255406 eV Total energy + Delta-G solvation = -3732.443985 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.38955 -39.75054 -38.70561 -36.49739 -35.49280 -32.85415 -32.56986 -32.21042 -31.68407 -29.17430 -28.45815 -26.84781 -25.17914 -23.72709 -21.97377 -21.59899 -21.13611 -20.83036 -20.13465 -18.28949 -17.60481 -16.99413 -16.73297 -16.10473 -15.82440 -15.23297 -14.99444 -14.70584 -14.39865 -14.30593 -14.16222 -13.79525 -13.67824 -13.45697 -13.28305 -13.17262 -12.54520 -12.33605 -12.25834 -11.97469 -11.65779 -11.41365 -11.18968 -10.75892 -10.70864 -10.54253 -10.39777 -10.39048 -10.33873 -9.69692 -9.25582 -9.09292 -8.78246 -8.75165 -7.97540 -7.12812 -6.35845 -3.94764 1.64340 2.17364 2.48003 2.64469 2.79884 2.84660 3.18972 3.19486 3.22733 3.29072 4.04065 4.06005 4.48996 4.59374 4.66875 4.74555 4.95100 4.97744 5.14189 5.18361 5.19811 5.26802 5.33906 5.56404 5.62608 5.71457 5.75103 5.82501 5.87413 6.01653 6.26409 6.34837 6.40810 6.42955 6.74672 6.93987 7.00929 7.15651 7.35471 7.44874 7.48914 7.53247 7.74241 7.92071 8.09233 8.38216 9.09721 9.81377 10.82427 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.002118 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.653120 B =13216.952852 C =13962.517575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.076 4.076 13 C -0.197 4.197 14 C -0.033 4.033 15 C -0.093 4.093 16 C 0.513 3.487 17 O -0.515 6.515 18 N -0.742 5.742 19 C 0.129 3.871 20 C -0.043 4.043 21 C 0.210 3.790 22 N -0.480 5.480 23 C -0.025 4.025 24 C -0.058 4.058 25 N -0.567 5.567 26 H 0.418 0.582 27 C -0.174 4.174 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.398 0.602 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -27.490 -2.109 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.216 4.216 14 C -0.034 4.034 15 C -0.133 4.133 16 C 0.299 3.701 17 O -0.388 6.388 18 N -0.396 5.396 19 C 0.005 3.995 20 C -0.082 4.082 21 C -0.055 4.055 22 N -0.200 5.200 23 C -0.173 4.173 24 C -0.192 4.192 25 N -0.170 5.170 26 H 0.256 0.744 27 C -0.194 4.194 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.232 0.768 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.189 0.811 40 H 0.195 0.805 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.399 -25.992 -2.887 26.155 hybrid contribution 0.963 -0.719 0.332 1.247 sum 1.362 -26.711 -2.555 26.867 Atomic orbital electron populations 1.70038 1.05912 1.27613 1.46423 1.25274 0.95840 0.98759 0.96718 0.85791 0.78670 0.79885 0.79117 1.19555 1.20342 1.19570 1.21263 0.91736 0.80895 1.52792 0.89205 1.83978 1.34198 1.11347 1.78794 1.19283 0.90253 0.87982 0.92378 1.21173 0.93842 0.98978 1.10975 1.20670 0.98336 0.92358 0.98029 1.20337 0.93312 0.96844 1.11089 1.18662 0.93218 0.91803 0.99725 1.20585 1.02613 0.95856 0.94210 1.20762 0.77057 0.80188 0.92044 1.90780 1.48854 1.59197 1.39988 1.45989 1.63358 1.21663 1.08605 1.21135 1.00526 0.92870 0.85006 1.20118 1.02705 0.96438 0.88950 1.22949 1.00508 0.84278 0.97718 1.70277 1.18972 1.31033 0.99700 1.22431 1.04458 0.91492 0.98918 1.22789 1.06889 1.03079 0.86410 1.43287 1.44814 1.16347 1.12568 0.74386 1.19955 0.99104 0.89983 1.10317 0.92081 0.85651 0.87528 0.87996 0.88433 0.88180 0.76843 0.89948 0.91604 0.89814 0.88351 0.81143 0.80524 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.13 13.67 55.48 0.76 -25.37 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -11.34 9.49 30.89 0.29 -11.05 16 8 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 9 O -0.18 -5.36 9.76 0.05 0.00 -5.36 16 10 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 12 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 13 C -0.20 -3.64 9.70 -39.54 -0.38 -4.02 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.23 5.83 -29.03 -0.17 -1.40 16 16 C 0.51 7.50 7.82 -10.99 -0.09 7.42 16 17 O -0.51 -10.43 16.03 5.56 0.09 -10.34 16 18 N -0.74 -7.31 5.56 -60.30 -0.33 -7.65 16 19 C 0.13 1.32 5.63 -4.05 -0.02 1.30 16 20 C -0.04 -0.28 5.96 -27.89 -0.17 -0.44 16 21 C 0.21 1.85 7.43 -155.42 -1.15 0.70 16 22 N -0.48 -5.69 11.21 -10.81 -0.12 -5.81 16 23 C -0.02 -0.23 11.87 -17.81 -0.21 -0.44 16 24 C -0.06 -0.38 12.04 -16.56 -0.20 -0.58 16 25 N -0.57 -3.43 6.15 -10.23 -0.06 -3.49 16 26 H 0.42 1.06 8.96 -40.82 -0.37 0.69 16 27 C -0.17 -3.92 9.65 -39.40 -0.38 -4.30 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 30 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 31 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.40 2.32 8.47 -40.82 -0.35 1.98 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.11 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -39.26 360.00 -8.38 -47.64 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.06 Total: 5.58 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -4.05 Total: -16.80 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.24 Total: -42.32 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -39.26 -8.38 -47.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760532738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.889 kcal (2) G-P(sol) polarization free energy of solvation -39.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds