Wall clock time and date at job start Tue Mar 31 2020 10:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 C 1.50703 * 109.47256 * 180.02562 * 20 19 18 22 22 N 1.30502 * 125.64776 * 304.69272 * 21 20 19 23 23 C 1.34126 * 109.26020 * 179.89271 * 22 21 20 24 24 C 1.34675 * 108.01735 * 0.37081 * 23 22 21 25 25 N 1.35039 * 125.65308 * 124.99838 * 21 20 19 26 26 H 0.96996 * 126.40191 * 359.97438 * 25 21 20 27 27 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 31 31 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 32 32 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 33 33 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 34 34 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 35 35 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 36 36 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 37 37 H 1.09001 * 109.47096 * 299.99723 * 20 19 18 38 38 H 1.09000 * 109.47823 * 60.00003 * 20 19 18 39 39 H 1.07998 * 125.99522 * 180.10886 * 23 22 21 40 40 H 1.07995 * 126.58895 * 179.81504 * 24 23 22 41 41 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 6 0.4306 -9.5674 -2.3663 20 6 -0.2663 -10.9228 -2.2323 21 6 -0.5022 -11.5041 -3.6026 22 7 -1.1393 -10.9168 -4.5785 23 6 -1.1538 -11.7264 -5.6478 24 6 -0.5081 -12.8617 -5.3195 25 7 -0.0945 -12.7211 -4.0222 26 1 0.3991 -13.3739 -3.5016 27 6 1.4365 -4.7345 0.2253 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5471 0.1902 31 1 4.1533 -6.7247 0.4045 32 1 2.1300 -7.9004 1.0433 33 1 0.5456 -7.0924 0.9734 34 1 0.3769 -9.4904 -0.2452 35 1 -0.1993 -8.8909 -2.9441 36 1 1.3856 -9.6982 -2.8752 37 1 0.3632 -11.5995 -1.6545 38 1 -1.2214 -10.7917 -1.7236 39 1 -1.6078 -11.5081 -6.6031 40 1 -0.3470 -13.7181 -5.9574 41 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760532738.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:29 Heat of formation + Delta-G solvation = -13.680888 kcal Electronic energy + Delta-G solvation = -24099.997238 eV Core-core repulsion = 20366.255406 eV Total energy + Delta-G solvation = -3733.741833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.96442 -41.09829 -40.35173 -38.22323 -36.49863 -34.33609 -33.65716 -33.45950 -32.79625 -30.87631 -29.39521 -28.07569 -27.20490 -24.60477 -23.25170 -22.70875 -22.51568 -21.62540 -21.22819 -19.50307 -18.91839 -18.74478 -17.84180 -17.05466 -16.89792 -16.63762 -16.34447 -16.08810 -15.82161 -15.50671 -15.35438 -14.94829 -14.82458 -14.62207 -14.49000 -14.27918 -14.04860 -13.80376 -13.58308 -12.98731 -12.94274 -12.81767 -12.47034 -12.43909 -12.37347 -12.20032 -12.11680 -11.19599 -11.03572 -10.98551 -10.96337 -10.78010 -10.09325 -9.62034 -9.36124 -8.96120 -8.46005 -6.14697 0.53731 0.77718 1.09456 1.33825 1.45563 1.50868 1.71155 2.00862 2.18103 2.18714 2.45929 2.86917 3.19749 3.46235 3.51205 3.83441 3.97030 4.02285 4.12440 4.20826 4.25861 4.34022 4.47032 4.48375 4.58361 4.60924 4.69047 4.69602 4.75977 4.95585 4.99574 5.09999 5.14028 5.15176 5.32875 5.44876 5.66913 5.74615 5.77212 5.80569 6.03791 6.26082 6.53644 6.63854 6.98152 7.15881 7.36353 7.80401 8.77430 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.002118 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.653120 B =13216.952852 C =13962.517575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.109 3.891 11 C -0.247 4.247 12 C -0.075 4.075 13 C -0.180 4.180 14 C -0.027 4.027 15 C -0.089 4.089 16 C 0.512 3.488 17 O -0.583 6.583 18 N -0.713 5.713 19 C 0.134 3.866 20 C -0.030 4.030 21 C 0.194 3.806 22 N -0.536 5.536 23 C -0.069 4.069 24 C -0.035 4.035 25 N -0.552 5.552 26 H 0.437 0.563 27 C -0.195 4.195 28 H 0.272 0.728 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.423 0.577 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.175 0.825 40 H 0.215 0.785 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 -31.366 -0.690 31.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.267 4.267 12 C -0.093 4.093 13 C -0.198 4.198 14 C -0.028 4.028 15 C -0.128 4.128 16 C 0.299 3.701 17 O -0.462 6.462 18 N -0.368 5.368 19 C 0.009 3.991 20 C -0.069 4.069 21 C -0.071 4.071 22 N -0.257 5.257 23 C -0.216 4.216 24 C -0.170 4.170 25 N -0.157 5.157 26 H 0.279 0.721 27 C -0.214 4.214 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.192 0.808 40 H 0.232 0.768 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.766 -29.994 -1.411 30.154 hybrid contribution 0.301 0.087 -0.135 0.341 sum 3.067 -29.907 -1.546 30.104 Atomic orbital electron populations 1.70194 1.08039 1.28809 1.49037 1.26645 0.96928 1.02817 0.95918 0.84625 0.77366 0.74118 0.79919 1.18402 1.19465 1.17881 1.21789 0.92492 0.81529 1.53277 0.88262 1.83936 1.35922 1.12571 1.81787 1.19911 0.91738 0.87964 0.94438 1.21300 0.93107 1.00304 1.11962 1.21146 1.00232 0.91546 0.96385 1.20997 0.93524 0.98044 1.07269 1.19248 0.93809 0.93012 0.96684 1.20713 1.04448 0.93494 0.94145 1.21013 0.76580 0.80833 0.91642 1.90774 1.52146 1.61235 1.42041 1.45696 1.61210 1.20231 1.09655 1.20996 0.99455 0.94223 0.84438 1.20108 1.03583 0.94662 0.88535 1.23228 1.00567 0.85238 0.98031 1.70193 1.20935 1.33160 1.01384 1.22765 1.06736 0.92884 0.99202 1.23313 1.04304 1.02853 0.86552 1.43244 1.44092 1.15890 1.12487 0.72112 1.20256 0.99314 0.90586 1.11256 0.91865 0.86506 0.83676 0.83254 0.83258 0.85829 0.73872 0.93940 0.92960 0.85550 0.87312 0.80772 0.76792 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.10 13.67 21.61 0.30 -58.80 16 2 C -0.03 -1.56 5.49 84.83 0.47 -1.09 16 3 Si 1.02 44.87 29.55 68.60 2.03 46.90 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.25 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.41 -25.57 9.49 67.92 0.64 -24.93 16 8 H 0.10 5.63 5.21 -2.91 -0.02 5.62 16 9 O -0.24 -15.14 9.76 -22.74 -0.22 -15.36 16 10 C 0.11 5.93 6.65 22.58 0.15 6.08 16 11 C -0.25 -11.73 9.17 22.39 0.21 -11.52 16 12 C -0.08 -2.80 10.04 22.25 0.22 -2.58 16 13 C -0.18 -5.99 9.70 22.30 0.22 -5.77 16 14 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 15 C -0.09 -2.00 5.83 29.10 0.17 -1.83 16 16 C 0.51 13.86 7.82 87.66 0.69 14.55 16 17 O -0.58 -23.65 16.03 -3.04 -0.05 -23.70 16 18 N -0.71 -12.04 5.56 -463.07 -2.57 -14.61 16 19 C 0.13 2.61 5.63 86.38 0.49 3.10 16 20 C -0.03 -0.31 5.96 29.85 0.18 -0.13 16 21 C 0.19 3.15 7.43 138.13 1.03 4.18 16 22 N -0.54 -12.94 11.21 -188.13 -2.11 -15.05 16 23 C -0.07 -1.29 11.87 83.53 0.99 -0.30 16 24 C -0.04 -0.39 12.04 83.09 1.00 0.61 16 25 N -0.55 -5.17 6.15 -186.26 -1.15 -6.31 16 26 H 0.44 0.52 8.96 -92.71 -0.83 -0.31 16 27 C -0.19 -9.05 9.65 22.39 0.22 -8.83 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 30 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.15 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.12 2.29 8.08 -2.39 -0.02 2.27 16 34 H 0.42 2.97 8.47 -92.71 -0.79 2.18 16 35 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.22 0.52 8.06 -2.91 -0.02 0.50 16 41 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -97.37 360.00 2.26 -95.10 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.53 Total: 21.34 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 6.57 Total: -29.51 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -5.53 Total: -94.78 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.27 Total: -39.06 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -97.37 2.26 -95.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760532738.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.423 kcal (2) G-P(sol) polarization free energy of solvation -97.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds