Wall clock time and date at job start Tue Mar 31 2020 10:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 O 1.45201 * 109.45280 * 181.24320 * 12 11 10 14 14 C 1.34724 * 116.99673 * 89.78708 * 13 12 11 15 15 O 1.21466 * 120.00187 * 0.02562 * 14 13 12 16 16 C 1.47835 * 119.99894 * 180.02562 * 14 13 12 17 17 C 1.39834 * 119.32130 * 179.72726 * 16 14 13 18 18 C 1.37010 * 119.44993 * 179.79601 * 17 16 14 19 19 C 1.39775 * 118.23950 * 0.43538 * 18 17 16 20 20 C 1.46132 * 134.24756 * 179.76592 * 19 18 17 21 21 C 1.34447 * 106.92592 * 180.02562 * 20 19 18 22 22 N 1.36710 * 110.00853 * 0.02562 * 21 20 19 23 23 H 0.97000 * 124.99755 * 179.97438 * 22 21 20 24 24 C 1.37564 * 110.00192 * 0.02562 * 22 21 20 25 25 N 1.32138 * 133.19976 * 180.02562 * 24 22 21 26 26 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 27 27 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 28 28 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 30 30 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 31 31 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 32 32 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 33 33 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 34 34 H 1.08001 * 120.27825 * 0.02562 * 17 16 14 35 35 H 1.07994 * 120.88111 * 180.27154 * 18 17 16 36 36 H 1.07999 * 126.53894 * 0.04148 * 20 19 18 37 37 H 1.07997 * 124.99620 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.49555 * 178.74703 * 26 12 11 39 39 H 1.08999 * 109.49562 * 58.65207 * 26 12 11 40 40 H 1.08996 * 109.59017 * 246.20330 * 27 9 7 41 41 H 1.09009 * 109.58200 * 6.48305 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 8 1.0376 -5.6395 2.9204 14 6 -0.0373 -6.3040 3.3877 15 8 -1.1327 -6.1050 2.9021 16 6 0.1166 -7.2752 4.4916 17 6 -1.0095 -7.9527 4.9695 18 6 -0.8693 -8.8565 5.9896 19 6 0.4068 -9.0595 6.5226 20 6 0.9453 -9.9066 7.5846 21 6 2.2670 -9.6675 7.6438 22 7 2.6163 -8.7360 6.7061 23 1 3.5158 -8.4034 6.5604 24 6 1.5042 -8.3389 6.0004 25 7 1.3184 -7.4808 5.0128 26 6 2.0674 -4.6174 0.9645 27 6 1.8137 -3.6528 -0.1983 28 1 -0.4850 0.8400 -0.0004 29 1 0.0993 -1.3344 1.6687 30 1 -0.6775 -2.6380 0.7360 31 1 1.3427 -2.9695 3.0019 32 1 -0.3882 -3.3843 3.0516 33 1 -0.0283 -5.0408 1.2304 34 1 -1.9810 -7.7679 4.5355 35 1 -1.7225 -9.3959 6.3735 36 1 0.3880 -10.5939 8.2038 37 1 2.9521 -10.1416 8.3310 38 1 2.3041 -5.6063 0.5718 39 1 2.9024 -4.2538 1.5634 40 1 1.0401 -4.0603 -0.8491 41 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764791034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:43 Heat of formation + Delta-G solvation = 13.014216 kcal Electronic energy + Delta-G solvation = -25376.757975 eV Core-core repulsion = 21644.173729 eV Total energy + Delta-G solvation = -3732.584246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89398 -40.24690 -38.19020 -37.19787 -35.75052 -33.41257 -32.64020 -30.56243 -30.30822 -29.88187 -29.50027 -25.62425 -24.66329 -23.45078 -22.24127 -22.05491 -21.17881 -20.68429 -19.28715 -18.80279 -17.90509 -16.98695 -16.75391 -16.27805 -15.83066 -15.13674 -15.11090 -14.85412 -14.42089 -13.88233 -13.69172 -13.56074 -13.50275 -13.29497 -12.93323 -12.79734 -12.46610 -12.39545 -12.35704 -11.49592 -11.20259 -11.12208 -10.84659 -10.74740 -10.70674 -10.55094 -10.28119 -10.18613 -9.87920 -9.78274 -9.59267 -9.36130 -8.86482 -8.47932 -8.45405 -6.69742 -5.78517 -3.21654 0.27200 0.97826 2.15497 2.31664 2.61138 2.83653 3.40017 3.45645 3.47075 3.68147 4.07169 4.29357 4.37840 4.50326 4.73762 4.79852 4.95105 5.22749 5.29316 5.34972 5.40289 5.45209 5.49079 5.57772 5.76961 5.85401 6.00046 6.07106 6.08672 6.25372 6.31010 6.49915 6.53066 6.56501 6.64145 6.73734 6.82469 6.88944 6.97510 7.35079 7.52275 7.64922 7.80062 8.00603 8.44992 9.20584 9.83555 10.40324 11.30484 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027094 B = 0.002610 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.187702 B =10726.548503 C =11074.789287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.153 4.153 12 C 0.095 3.905 13 O -0.333 6.333 14 C 0.520 3.480 15 O -0.496 6.496 16 C 0.136 3.864 17 C -0.137 4.137 18 C -0.040 4.040 19 C -0.128 4.128 20 C -0.204 4.204 21 C 0.077 3.923 22 N -0.579 5.579 23 H 0.424 0.576 24 C 0.277 3.723 25 N -0.441 5.441 26 C -0.126 4.126 27 C 0.148 3.852 28 H 0.255 0.745 29 H 0.093 0.907 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -21.710 16.023 27.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.049 3.951 11 C -0.193 4.193 12 C 0.041 3.959 13 O -0.249 6.249 14 C 0.362 3.638 15 O -0.383 6.383 16 C -0.010 4.010 17 C -0.159 4.159 18 C -0.066 4.066 19 C -0.136 4.136 20 C -0.229 4.229 21 C -0.051 4.051 22 N -0.185 5.185 23 H 0.262 0.738 24 C 0.041 3.959 25 N -0.156 5.156 26 C -0.166 4.166 27 C 0.022 3.978 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.199 0.801 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.538 -20.946 15.481 26.170 hybrid contribution 0.137 0.598 0.296 0.681 sum 2.675 -20.348 15.777 25.887 Atomic orbital electron populations 1.70017 1.05283 1.25749 1.53607 1.25074 0.95309 0.98507 1.00705 0.86344 0.78895 0.83226 0.78143 1.20836 1.21616 1.20993 1.19143 0.92592 0.84726 1.42012 0.91560 1.44114 1.35867 1.01676 1.49849 1.20764 0.88828 0.97992 0.87525 1.22680 1.00947 0.94611 1.01061 1.23022 0.99779 0.87449 0.85618 1.86712 1.36222 1.51663 1.50259 1.20605 0.83082 0.78923 0.81222 1.90856 1.26846 1.63610 1.57034 1.19832 0.88367 0.97097 0.95693 1.21549 0.99775 0.96837 0.97704 1.20648 0.95748 0.96020 0.94165 1.20166 0.93897 1.00132 0.99387 1.21681 0.93627 1.05362 1.02251 1.22017 0.96894 0.92685 0.93490 1.41615 1.09072 1.37127 1.30712 0.73824 1.18300 0.87220 0.96148 0.94236 1.66359 1.25110 1.15500 1.08614 1.22215 0.96333 1.00055 0.97982 1.20892 0.98299 0.86513 0.92132 0.93471 0.88871 0.95896 0.91689 0.92704 0.90225 0.82855 0.83708 0.82795 0.80130 0.92246 0.91105 0.96062 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 11.20 55.49 0.62 -25.94 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -7.09 9.58 -15.06 -0.14 -7.23 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -15.23 3.00 -172.31 -0.52 -15.75 16 10 C 0.17 4.37 5.30 -3.71 -0.02 4.35 16 11 C -0.15 -3.27 5.73 -26.59 -0.15 -3.43 16 12 C 0.10 1.87 2.42 -26.67 -0.06 1.81 16 13 O -0.33 -6.26 9.68 -40.56 -0.39 -6.65 16 14 C 0.52 9.14 7.91 34.66 0.27 9.41 16 15 O -0.50 -9.44 15.54 -19.24 -0.30 -9.73 16 16 C 0.14 2.03 6.74 -83.01 -0.56 1.47 16 17 C -0.14 -1.61 9.55 -39.43 -0.38 -1.99 16 18 C -0.04 -0.38 10.17 -39.45 -0.40 -0.78 16 19 C -0.13 -1.31 6.39 -105.00 -0.67 -1.98 16 20 C -0.20 -1.40 11.08 -37.76 -0.42 -1.82 16 21 C 0.08 0.42 11.81 -16.72 -0.20 0.22 16 22 N -0.58 -4.64 6.05 -12.09 -0.07 -4.71 16 23 H 0.42 2.49 8.96 -40.82 -0.37 2.13 16 24 C 0.28 3.30 8.43 -155.80 -1.31 1.99 16 25 N -0.44 -6.52 10.12 -8.83 -0.09 -6.61 16 26 C -0.13 -2.38 5.75 -26.61 -0.15 -2.54 16 27 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.09 2.56 6.06 -51.93 -0.31 2.25 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.62 7.16 -51.93 -0.37 1.25 16 34 H 0.15 1.63 7.60 -52.49 -0.40 1.23 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.18 0.22 8.06 -52.49 -0.42 -0.20 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.31 7.93 -51.92 -0.41 0.89 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -34.04 345.71 -10.09 -44.13 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.22 Total: 0.55 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -4.31 Total: 2.63 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.06 Total: -53.00 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.69 Total: -16.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.04 -10.09 -44.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764791034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.147 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds