Wall clock time and date at job start Tue Mar 31 2020 10:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 O 1.45201 * 109.45280 * 181.24320 * 12 11 10 14 14 C 1.34724 * 116.99673 * 89.78708 * 13 12 11 15 15 O 1.21466 * 120.00187 * 0.02562 * 14 13 12 16 16 C 1.47835 * 119.99894 * 180.02562 * 14 13 12 17 17 C 1.39834 * 119.32130 * 179.72726 * 16 14 13 18 18 C 1.37010 * 119.44993 * 179.79601 * 17 16 14 19 19 C 1.39775 * 118.23950 * 0.43538 * 18 17 16 20 20 C 1.46132 * 134.24756 * 179.76592 * 19 18 17 21 21 C 1.34447 * 106.92592 * 180.02562 * 20 19 18 22 22 N 1.36710 * 110.00853 * 0.02562 * 21 20 19 23 23 H 0.97000 * 124.99755 * 179.97438 * 22 21 20 24 24 C 1.37564 * 110.00192 * 0.02562 * 22 21 20 25 25 N 1.32138 * 133.19976 * 180.02562 * 24 22 21 26 26 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 27 27 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 28 28 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 30 30 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 31 31 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 32 32 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 33 33 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 34 34 H 1.08001 * 120.27825 * 0.02562 * 17 16 14 35 35 H 1.07994 * 120.88111 * 180.27154 * 18 17 16 36 36 H 1.07999 * 126.53894 * 0.04148 * 20 19 18 37 37 H 1.07997 * 124.99620 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.49555 * 178.74703 * 26 12 11 39 39 H 1.08999 * 109.49562 * 58.65207 * 26 12 11 40 40 H 1.08996 * 109.59017 * 246.20330 * 27 9 7 41 41 H 1.09009 * 109.58200 * 6.48305 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 8 1.0376 -5.6395 2.9204 14 6 -0.0373 -6.3040 3.3877 15 8 -1.1327 -6.1050 2.9021 16 6 0.1166 -7.2752 4.4916 17 6 -1.0095 -7.9527 4.9695 18 6 -0.8693 -8.8565 5.9896 19 6 0.4068 -9.0595 6.5226 20 6 0.9453 -9.9066 7.5846 21 6 2.2670 -9.6675 7.6438 22 7 2.6163 -8.7360 6.7061 23 1 3.5158 -8.4034 6.5604 24 6 1.5042 -8.3389 6.0004 25 7 1.3184 -7.4808 5.0128 26 6 2.0674 -4.6174 0.9645 27 6 1.8137 -3.6528 -0.1983 28 1 -0.4850 0.8400 -0.0004 29 1 0.0993 -1.3344 1.6687 30 1 -0.6775 -2.6380 0.7360 31 1 1.3427 -2.9695 3.0019 32 1 -0.3882 -3.3843 3.0516 33 1 -0.0283 -5.0408 1.2304 34 1 -1.9810 -7.7679 4.5355 35 1 -1.7225 -9.3959 6.3735 36 1 0.3880 -10.5939 8.2038 37 1 2.9521 -10.1416 8.3310 38 1 2.3041 -5.6063 0.5718 39 1 2.9024 -4.2538 1.5634 40 1 1.0401 -4.0603 -0.8491 41 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764791034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:43 Heat of formation + Delta-G solvation = -7.344164 kcal Electronic energy + Delta-G solvation = -25377.640780 eV Core-core repulsion = 21644.173729 eV Total energy + Delta-G solvation = -3733.467052 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.64528 -41.60174 -39.39258 -38.56108 -37.33739 -34.64831 -34.14124 -32.17137 -31.59577 -31.25995 -30.49344 -27.30074 -25.92693 -24.47367 -24.00002 -23.60062 -22.09032 -21.63518 -21.06229 -19.59203 -19.13241 -18.83916 -17.90627 -17.35395 -17.15280 -16.83736 -16.05932 -15.96351 -15.83950 -15.44769 -15.16440 -14.93399 -14.60027 -14.36141 -14.23062 -14.17848 -14.10539 -13.34762 -13.29973 -13.10613 -13.05476 -12.85640 -12.60085 -12.42328 -12.15709 -12.08754 -11.97439 -11.82960 -11.61043 -11.49380 -11.11952 -10.63538 -10.56584 -9.68335 -9.06754 -8.77807 -7.91328 -5.38045 -0.64505 0.19027 1.22698 1.39872 1.46730 1.49935 1.56520 1.78782 1.80524 2.49537 2.75322 3.15400 3.25642 3.53074 3.58972 3.73413 3.75545 3.83491 3.85619 4.03326 4.11687 4.32927 4.34412 4.53306 4.60820 4.66316 4.68992 4.74861 4.84134 4.90040 4.92353 5.02600 5.09505 5.21209 5.30510 5.39285 5.42128 5.46757 5.59148 5.63190 5.85011 6.17954 6.34658 6.54903 6.84590 7.08713 7.77929 8.31510 9.16470 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027094 B = 0.002610 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.187702 B =10726.548503 C =11074.789287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.611 5.611 10 C 0.185 3.815 11 C -0.139 4.139 12 C 0.101 3.899 13 O -0.337 6.337 14 C 0.518 3.482 15 O -0.521 6.521 16 C 0.098 3.902 17 C -0.140 4.140 18 C -0.034 4.034 19 C -0.130 4.130 20 C -0.215 4.215 21 C 0.102 3.898 22 N -0.577 5.577 23 H 0.432 0.568 24 C 0.244 3.756 25 N -0.469 5.469 26 C -0.113 4.113 27 C 0.145 3.855 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.000 1.000 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.157 0.843 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.021 0.979 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -24.312 18.424 30.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.334 5.334 10 C 0.059 3.941 11 C -0.179 4.179 12 C 0.047 3.953 13 O -0.252 6.252 14 C 0.362 3.638 15 O -0.410 6.410 16 C -0.046 4.046 17 C -0.162 4.162 18 C -0.059 4.059 19 C -0.138 4.138 20 C -0.239 4.239 21 C -0.025 4.025 22 N -0.184 5.184 23 H 0.272 0.728 24 C 0.007 3.993 25 N -0.185 5.185 26 C -0.152 4.152 27 C 0.020 3.980 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.018 0.982 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.175 0.825 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.248 0.752 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.191 -23.577 17.880 29.886 hybrid contribution -0.298 1.211 -0.294 1.282 sum 3.893 -22.366 17.587 28.717 Atomic orbital electron populations 1.70181 1.06832 1.26161 1.55072 1.25893 0.96082 1.01816 1.00899 0.85278 0.77518 0.78813 0.78458 1.19718 1.22045 1.20416 1.19524 0.93076 0.85739 1.41337 0.90911 1.44364 1.35788 1.02774 1.50477 1.20469 0.88211 0.97164 0.88258 1.22431 1.00848 0.95040 0.99554 1.22772 0.99966 0.86652 0.85955 1.86717 1.36967 1.51592 1.49927 1.21227 0.82352 0.78783 0.81470 1.90824 1.27428 1.64606 1.58127 1.19562 0.89844 0.98631 0.96536 1.21647 0.98934 0.97172 0.98448 1.21045 0.96982 0.95040 0.92879 1.20685 0.93628 0.99795 0.99689 1.22116 0.94290 1.05679 1.01849 1.22940 0.97431 0.90233 0.91940 1.41859 1.08762 1.37255 1.30513 0.72848 1.18693 0.89387 0.96635 0.94562 1.66139 1.25326 1.16949 1.10060 1.22034 0.95570 1.00819 0.96773 1.21047 0.98566 0.85222 0.93197 0.93945 0.91862 0.98151 0.91998 0.92532 0.91180 0.82502 0.79927 0.79763 0.75208 0.89239 0.91212 0.96112 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.98 11.20 21.65 0.24 -56.74 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 3 Si 0.97 45.63 29.59 68.60 2.03 47.65 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.27 -15.01 9.58 84.03 0.81 -14.20 16 8 H 0.07 3.91 7.88 -2.91 -0.02 3.89 16 9 N -0.61 -32.09 3.00 -699.07 -2.09 -34.18 16 10 C 0.19 9.67 5.30 86.37 0.46 10.13 16 11 C -0.14 -6.17 5.73 30.69 0.18 -5.99 16 12 C 0.10 4.06 2.42 30.63 0.07 4.13 16 13 O -0.34 -12.94 9.68 -56.34 -0.55 -13.48 16 14 C 0.52 18.92 7.91 70.36 0.56 19.48 16 15 O -0.52 -20.73 15.54 19.94 0.31 -20.42 16 16 C 0.10 3.00 6.74 41.96 0.28 3.28 16 17 C -0.14 -3.28 9.55 22.37 0.21 -3.07 16 18 C -0.03 -0.58 10.17 22.35 0.23 -0.35 16 19 C -0.13 -2.33 6.39 -20.11 -0.13 -2.46 16 20 C -0.22 -2.03 11.08 23.45 0.26 -1.77 16 21 C 0.10 0.64 11.81 83.07 0.98 1.63 16 22 N -0.58 -7.70 6.05 -192.17 -1.16 -8.86 16 23 H 0.43 4.09 8.96 -92.71 -0.83 3.26 16 24 C 0.24 5.52 8.43 134.16 1.13 6.65 16 25 N -0.47 -13.99 10.12 -181.86 -1.84 -15.83 16 26 C -0.11 -4.20 5.75 30.67 0.18 -4.02 16 27 C 0.15 6.24 6.52 86.36 0.56 6.80 16 28 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.06 3.66 6.06 -2.39 -0.01 3.65 16 30 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.96 7.16 -2.39 -0.02 2.94 16 34 H 0.16 3.41 7.60 -2.91 -0.02 3.38 16 35 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.23 -0.93 8.06 -2.91 -0.02 -0.95 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 3.03 7.93 -2.38 -0.02 3.01 16 Total: -1.00 -77.44 345.71 3.37 -74.07 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.24 Total: 10.08 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 6.19 Total: 17.71 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -4.86 Total: -115.61 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.24 Total: -33.90 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -77.44 3.37 -74.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764791034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.724 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds