Wall clock time and date at job start Tue Mar 31 2020 10:44:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86795 * 120.00323 * 2 1
4 4 H 1.48503 * 109.47611 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47271 * 300.00288 * 3 2 1
6 6 H 1.48496 * 109.47355 * 60.00071 * 3 2 1
7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1
9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1
10 10 C 1.46926 * 120.63630 * 151.92945 * 9 7 2
11 11 C 1.53191 * 108.89452 * 126.46229 * 10 9 7
12 12 C 1.53036 * 109.31166 * 54.56289 * 11 10 9
13 13 O 1.45209 * 109.46001 * 178.61238 * 12 11 10
14 14 C 1.34748 * 117.00439 * 210.00014 * 13 12 11
15 15 O 1.21515 * 119.99662 * 0.02562 * 14 13 12
16 16 C 1.47449 * 120.00270 * 180.02562 * 14 13 12
17 17 C 1.36638 * 125.92795 * 179.72241 * 16 14 13
18 18 N 1.36162 * 107.08928 * 179.83930 * 17 16 14
19 19 C 1.36698 * 132.28503 * 180.08604 * 18 17 16
20 20 C 1.34834 * 120.64100 * 180.36472 * 19 18 17
21 21 C 1.40582 * 120.34895 * 359.97438 * 20 19 18
22 22 C 1.35889 * 119.72815 * 0.02562 * 21 20 19
23 23 C 1.37282 * 107.35785 * 0.41366 * 18 17 16
24 24 N 1.32219 * 108.38532 * 359.73889 * 23 18 17
25 25 C 1.53043 * 109.54325 * 298.63432 * 12 11 10
26 26 C 1.46973 * 120.64920 * 331.74411 * 9 7 2
27 27 H 0.97000 * 119.99637 * 359.97438 * 1 2 3
28 28 H 1.09000 * 109.58277 * 6.60169 * 10 9 7
29 29 H 1.08996 * 109.58760 * 246.32206 * 10 9 7
30 30 H 1.09001 * 109.49711 * 174.51722 * 11 10 9
31 31 H 1.09005 * 109.49935 * 294.61446 * 11 10 9
32 32 H 1.08996 * 109.46111 * 58.64684 * 12 11 10
33 33 H 1.07998 * 126.46170 * 359.97438 * 17 16 14
34 34 H 1.08003 * 119.67629 * 0.38000 * 19 18 17
35 35 H 1.08004 * 119.82852 * 180.02562 * 20 19 18
36 36 H 1.07992 * 120.13632 * 179.97438 * 21 20 19
37 37 H 1.08004 * 120.32204 * 180.02562 * 22 21 20
38 38 H 1.08995 * 109.49931 * 181.32094 * 25 12 11
39 39 H 1.08997 * 109.49588 * 301.38551 * 25 12 11
40 40 H 1.09000 * 109.46458 * 113.75121 * 26 9 7
41 41 H 1.08992 * 109.71060 * 353.46784 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8915 2.3964 -1.2125
6 1 1.8916 2.3964 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0555 -1.2222 -0.2713
9 7 1.3695 -2.3628 0.3423
10 6 1.8154 -3.6529 -0.2015
11 6 2.0655 -4.6207 0.9594
12 6 0.8080 -4.7055 1.8275
13 8 1.0303 -5.6472 2.9103
14 6 -0.0462 -6.3122 3.3734
15 8 -1.1408 -6.1111 2.8855
16 6 0.1040 -7.2839 4.4723
17 6 -0.9010 -8.0179 5.0364
18 7 -0.3374 -8.7880 6.0076
19 6 -0.8634 -9.7018 6.8776
20 6 -0.0740 -10.3375 7.7669
21 6 1.3053 -10.0690 7.8115
22 6 1.8435 -9.1632 6.9533
23 6 1.0056 -8.5043 6.0274
24 7 1.2541 -7.5976 5.0976
25 6 0.4931 -3.3252 2.4087
26 6 0.2252 -2.3428 1.2643
27 1 -0.4849 0.8401 0.0004
28 1 2.7375 -3.5125 -0.7654
29 1 1.0448 -4.0593 -0.8565
30 1 2.3025 -5.6087 0.5647
31 1 2.8993 -4.2592 1.5612
32 1 -0.0310 -5.0432 1.2192
33 1 -1.9453 -7.9936 4.7621
34 1 -1.9215 -9.9169 6.8522
35 1 -0.5033 -11.0574 8.4480
36 1 1.9343 -10.5798 8.5254
37 1 2.9020 -8.9499 6.9789
38 1 -0.3889 -3.3913 3.0456
39 1 1.3415 -2.9762 2.9973
40 1 -0.6769 -2.6412 0.7302
41 1 0.0957 -1.3385 1.6677
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000770786710.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:44:38
Heat of formation + Delta-G solvation = 31.101963 kcal
Electronic energy + Delta-G solvation = -25279.980080 eV
Core-core repulsion = 21548.180178 eV
Total energy + Delta-G solvation = -3731.799903 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.21429 -40.09408 -37.84911 -37.19652 -35.70587 -34.12632 -32.64810 -30.95170
-30.18489 -29.62851 -29.25266 -25.85527 -24.69896 -23.38475 -23.00723 -22.19409
-21.88173 -20.30743 -19.24530 -18.45653 -17.35315 -17.22448 -16.86178 -16.49228
-16.26496 -15.42541 -15.30142 -14.99829 -14.77345 -14.49361 -13.94049 -13.53206
-13.27729 -12.89587 -12.84595 -12.75211 -12.42884 -12.23868 -12.14043 -11.51501
-11.47243 -11.18023 -11.11651 -10.73601 -10.70380 -10.58032 -10.40714 -10.25855
-10.13710 -9.86251 -9.62015 -9.37284 -9.27742 -8.45035 -8.33158 -6.68036
-5.77160 -3.19992 0.19855 0.79085 1.70574 2.01694 2.89779 2.93755
3.32152 3.40063 3.47720 3.50332 3.71587 4.07849 4.23012 4.43096
4.51803 4.61031 4.84702 4.99130 5.07419 5.31461 5.32380 5.42430
5.50587 5.53874 5.59103 5.69618 5.79141 5.95775 5.99504 6.10114
6.27803 6.34139 6.51982 6.54635 6.59803 6.66523 6.75965 6.89494
6.99930 7.32505 7.36938 7.66383 7.82394 8.03362 8.46339 9.22090
9.85136 10.41891 11.31971
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.032315 B = 0.002444 C = 0.002412
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 866.249767 B =11455.567832 C =11603.801002
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.001 3.999
3 Si 0.903 3.097
4 H -0.277 1.277
5 H -0.290 1.290
6 H -0.289 1.289
7 C -0.252 4.252
8 H 0.068 0.932
9 N -0.593 5.593
10 C 0.149 3.851
11 C -0.127 4.127
12 C 0.097 3.903
13 O -0.335 6.335
14 C 0.548 3.452
15 O -0.503 6.503
16 C 0.028 3.972
17 C -0.011 4.011
18 N -0.366 5.366
19 C 0.054 3.946
20 C -0.136 4.136
21 C -0.105 4.105
22 C -0.070 4.070
23 C 0.221 3.779
24 N -0.440 5.440
25 C -0.154 4.154
26 C 0.175 3.825
27 H 0.254 0.746
28 H 0.064 0.936
29 H 0.021 0.979
30 H 0.059 0.941
31 H 0.071 0.929
32 H 0.080 0.920
33 H 0.200 0.800
34 H 0.167 0.833
35 H 0.153 0.847
36 H 0.145 0.855
37 H 0.155 0.845
38 H 0.054 0.946
39 H 0.065 0.935
40 H 0.023 0.977
41 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.167 -23.283 16.813 28.742
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.197 4.197
3 Si 0.733 3.267
4 H -0.202 1.202
5 H -0.217 1.217
6 H -0.216 1.216
7 C -0.382 4.382
8 H 0.085 0.915
9 N -0.316 5.316
10 C 0.022 3.978
11 C -0.167 4.167
12 C 0.043 3.957
13 O -0.250 6.250
14 C 0.390 3.610
15 O -0.391 6.391
16 C -0.104 4.104
17 C -0.146 4.146
18 N -0.038 5.038
19 C -0.067 4.067
20 C -0.157 4.157
21 C -0.128 4.128
22 C -0.090 4.090
23 C -0.025 4.025
24 N -0.160 5.160
25 C -0.193 4.193
26 C 0.049 3.951
27 H 0.064 0.936
28 H 0.082 0.918
29 H 0.039 0.961
30 H 0.078 0.922
31 H 0.090 0.910
32 H 0.098 0.902
33 H 0.217 0.783
34 H 0.184 0.816
35 H 0.171 0.829
36 H 0.163 0.837
37 H 0.173 0.827
38 H 0.072 0.928
39 H 0.084 0.916
40 H 0.041 0.959
41 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -0.863 -22.642 16.357 27.945
hybrid contribution -0.596 0.523 0.218 0.822
sum -1.459 -22.119 16.575 27.679
Atomic orbital electron populations
1.70040 1.05287 1.25469 1.53889 1.25076 0.95320 0.98513 1.00804
0.86207 0.79384 0.83838 0.77242 1.20194 1.21725 1.21555 1.19233
0.92606 0.84655 1.41701 0.91452 1.44133 1.35813 1.01698 1.49917
1.20887 0.98296 0.86467 0.92155 1.22226 0.96334 1.00096 0.98009
1.23015 0.99815 0.87285 0.85568 1.86697 1.36076 1.51643 1.50582
1.19525 0.82947 0.78220 0.80270 1.90866 1.26940 1.64071 1.57194
1.19579 0.89971 1.01143 0.99712 1.22570 1.00573 0.97606 0.93854
1.42800 1.10103 1.27068 1.23819 1.21698 1.00501 0.92317 0.92146
1.20879 0.94060 1.01354 0.99364 1.21077 0.95026 0.97694 0.99050
1.20394 1.00117 0.95503 0.92944 1.21117 0.82026 0.99240 1.00115
1.71010 1.25752 1.12390 1.06886 1.22674 1.00996 0.94609 1.01038
1.20770 0.88830 0.97953 0.87549 0.93620 0.91790 0.96067 0.92184
0.91015 0.90213 0.78273 0.81569 0.82912 0.83716 0.82699 0.92753
0.91597 0.95922 0.88859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.67 11.20 55.49 0.62 -26.05 16
2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16
3 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16
4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16
6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
7 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16
8 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16
9 N -0.59 -15.35 3.00 -172.29 -0.52 -15.86 16
10 C 0.15 3.22 6.51 -3.71 -0.02 3.20 16
11 C -0.13 -2.44 5.74 -26.61 -0.15 -2.59 16
12 C 0.10 1.94 2.42 -26.69 -0.06 1.87 16
13 O -0.33 -6.48 9.89 -40.62 -0.40 -6.88 16
14 C 0.55 9.88 7.94 34.48 0.27 10.15 16
15 O -0.50 -9.69 16.13 -19.28 -0.31 -10.00 16
16 C 0.03 0.43 6.97 -83.47 -0.58 -0.16 16
17 C -0.01 -0.12 11.47 -16.21 -0.19 -0.31 16
18 N -0.37 -3.67 2.93 -62.36 -0.18 -3.85 16
19 C 0.05 0.32 10.93 -16.59 -0.18 0.13 16
20 C -0.14 -0.57 9.98 -39.91 -0.40 -0.97 16
21 C -0.10 -0.52 10.06 -39.54 -0.40 -0.92 16
22 C -0.07 -0.56 10.11 -39.30 -0.40 -0.96 16
23 C 0.22 2.63 7.79 -156.04 -1.22 1.42 16
24 N -0.44 -6.83 11.35 -9.37 -0.11 -6.94 16
25 C -0.15 -3.32 5.72 -26.61 -0.15 -3.47 16
26 C 0.18 4.40 5.30 -3.69 -0.02 4.38 16
27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
28 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16
29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
31 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16
32 H 0.08 1.65 7.16 -51.93 -0.37 1.27 16
33 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16
34 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16
35 H 0.15 0.14 8.06 -52.48 -0.42 -0.28 16
36 H 0.15 0.30 8.06 -52.49 -0.42 -0.13 16
37 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16
38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16
39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16
40 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16
41 H 0.09 2.58 6.07 -51.93 -0.32 2.26 16
LS Contribution 347.36 15.07 5.23 5.23
Total: -1.00 -34.90 347.36 -9.72 -44.62
By element:
Atomic # 1 Polarization: 3.50 SS G_CDS: -5.30 Total: -1.79 kcal
Atomic # 6 Polarization: 8.27 SS G_CDS: -3.73 Total: 4.54 kcal
Atomic # 7 Polarization: -52.52 SS G_CDS: -0.18 Total: -52.70 kcal
Atomic # 8 Polarization: -16.17 SS G_CDS: -0.71 Total: -16.88 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -34.90 -9.72 -44.62 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000770786710.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.719 kcal
(2) G-P(sol) polarization free energy of solvation -34.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.822 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.102 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds