Wall clock time and date at job start Tue Mar 31 2020 10:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48503 * 109.47611 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47271 * 300.00288 * 3 2 1 6 6 H 1.48496 * 109.47355 * 60.00071 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46926 * 120.63630 * 151.92945 * 9 7 2 11 11 C 1.53191 * 108.89452 * 126.46229 * 10 9 7 12 12 C 1.53036 * 109.31166 * 54.56289 * 11 10 9 13 13 O 1.45209 * 109.46001 * 178.61238 * 12 11 10 14 14 C 1.34748 * 117.00439 * 210.00014 * 13 12 11 15 15 O 1.21515 * 119.99662 * 0.02562 * 14 13 12 16 16 C 1.47449 * 120.00270 * 180.02562 * 14 13 12 17 17 C 1.36638 * 125.92795 * 179.72241 * 16 14 13 18 18 N 1.36162 * 107.08928 * 179.83930 * 17 16 14 19 19 C 1.36698 * 132.28503 * 180.08604 * 18 17 16 20 20 C 1.34834 * 120.64100 * 180.36472 * 19 18 17 21 21 C 1.40582 * 120.34895 * 359.97438 * 20 19 18 22 22 C 1.35889 * 119.72815 * 0.02562 * 21 20 19 23 23 C 1.37282 * 107.35785 * 0.41366 * 18 17 16 24 24 N 1.32219 * 108.38532 * 359.73889 * 23 18 17 25 25 C 1.53043 * 109.54325 * 298.63432 * 12 11 10 26 26 C 1.46973 * 120.64920 * 331.74411 * 9 7 2 27 27 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58277 * 6.60169 * 10 9 7 29 29 H 1.08996 * 109.58760 * 246.32206 * 10 9 7 30 30 H 1.09001 * 109.49711 * 174.51722 * 11 10 9 31 31 H 1.09005 * 109.49935 * 294.61446 * 11 10 9 32 32 H 1.08996 * 109.46111 * 58.64684 * 12 11 10 33 33 H 1.07998 * 126.46170 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.67629 * 0.38000 * 19 18 17 35 35 H 1.08004 * 119.82852 * 180.02562 * 20 19 18 36 36 H 1.07992 * 120.13632 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.32204 * 180.02562 * 22 21 20 38 38 H 1.08995 * 109.49931 * 181.32094 * 25 12 11 39 39 H 1.08997 * 109.49588 * 301.38551 * 25 12 11 40 40 H 1.09000 * 109.46458 * 113.75121 * 26 9 7 41 41 H 1.08992 * 109.71060 * 353.46784 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8154 -3.6529 -0.2015 11 6 2.0655 -4.6207 0.9594 12 6 0.8080 -4.7055 1.8275 13 8 1.0303 -5.6472 2.9103 14 6 -0.0462 -6.3122 3.3734 15 8 -1.1408 -6.1111 2.8855 16 6 0.1040 -7.2839 4.4723 17 6 -0.9010 -8.0179 5.0364 18 7 -0.3374 -8.7880 6.0076 19 6 -0.8634 -9.7018 6.8776 20 6 -0.0740 -10.3375 7.7669 21 6 1.3053 -10.0690 7.8115 22 6 1.8435 -9.1632 6.9533 23 6 1.0056 -8.5043 6.0274 24 7 1.2541 -7.5976 5.0976 25 6 0.4931 -3.3252 2.4087 26 6 0.2252 -2.3428 1.2643 27 1 -0.4849 0.8401 0.0004 28 1 2.7375 -3.5125 -0.7654 29 1 1.0448 -4.0593 -0.8565 30 1 2.3025 -5.6087 0.5647 31 1 2.8993 -4.2592 1.5612 32 1 -0.0310 -5.0432 1.2192 33 1 -1.9453 -7.9936 4.7621 34 1 -1.9215 -9.9169 6.8522 35 1 -0.5033 -11.0574 8.4480 36 1 1.9343 -10.5798 8.5254 37 1 2.9020 -8.9499 6.9789 38 1 -0.3889 -3.3913 3.0456 39 1 1.3415 -2.9762 2.9973 40 1 -0.6769 -2.6412 0.7302 41 1 0.0957 -1.3385 1.6677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770786710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:38 Heat of formation + Delta-G solvation = 31.101963 kcal Electronic energy + Delta-G solvation = -25279.980080 eV Core-core repulsion = 21548.180178 eV Total energy + Delta-G solvation = -3731.799903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.21429 -40.09408 -37.84911 -37.19652 -35.70587 -34.12632 -32.64810 -30.95170 -30.18489 -29.62851 -29.25266 -25.85527 -24.69896 -23.38475 -23.00723 -22.19409 -21.88173 -20.30743 -19.24530 -18.45653 -17.35315 -17.22448 -16.86178 -16.49228 -16.26496 -15.42541 -15.30142 -14.99829 -14.77345 -14.49361 -13.94049 -13.53206 -13.27729 -12.89587 -12.84595 -12.75211 -12.42884 -12.23868 -12.14043 -11.51501 -11.47243 -11.18023 -11.11651 -10.73601 -10.70380 -10.58032 -10.40714 -10.25855 -10.13710 -9.86251 -9.62015 -9.37284 -9.27742 -8.45035 -8.33158 -6.68036 -5.77160 -3.19992 0.19855 0.79085 1.70574 2.01694 2.89779 2.93755 3.32152 3.40063 3.47720 3.50332 3.71587 4.07849 4.23012 4.43096 4.51803 4.61031 4.84702 4.99130 5.07419 5.31461 5.32380 5.42430 5.50587 5.53874 5.59103 5.69618 5.79141 5.95775 5.99504 6.10114 6.27803 6.34139 6.51982 6.54635 6.59803 6.66523 6.75965 6.89494 6.99930 7.32505 7.36938 7.66383 7.82394 8.03362 8.46339 9.22090 9.85136 10.41891 11.31971 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032315 B = 0.002444 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.249767 B =11455.567832 C =11603.801002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.127 4.127 12 C 0.097 3.903 13 O -0.335 6.335 14 C 0.548 3.452 15 O -0.503 6.503 16 C 0.028 3.972 17 C -0.011 4.011 18 N -0.366 5.366 19 C 0.054 3.946 20 C -0.136 4.136 21 C -0.105 4.105 22 C -0.070 4.070 23 C 0.221 3.779 24 N -0.440 5.440 25 C -0.154 4.154 26 C 0.175 3.825 27 H 0.254 0.746 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.200 0.800 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.023 0.977 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -23.283 16.813 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.167 4.167 12 C 0.043 3.957 13 O -0.250 6.250 14 C 0.390 3.610 15 O -0.391 6.391 16 C -0.104 4.104 17 C -0.146 4.146 18 N -0.038 5.038 19 C -0.067 4.067 20 C -0.157 4.157 21 C -0.128 4.128 22 C -0.090 4.090 23 C -0.025 4.025 24 N -0.160 5.160 25 C -0.193 4.193 26 C 0.049 3.951 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.217 0.783 34 H 0.184 0.816 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.863 -22.642 16.357 27.945 hybrid contribution -0.596 0.523 0.218 0.822 sum -1.459 -22.119 16.575 27.679 Atomic orbital electron populations 1.70040 1.05287 1.25469 1.53889 1.25076 0.95320 0.98513 1.00804 0.86207 0.79384 0.83838 0.77242 1.20194 1.21725 1.21555 1.19233 0.92606 0.84655 1.41701 0.91452 1.44133 1.35813 1.01698 1.49917 1.20887 0.98296 0.86467 0.92155 1.22226 0.96334 1.00096 0.98009 1.23015 0.99815 0.87285 0.85568 1.86697 1.36076 1.51643 1.50582 1.19525 0.82947 0.78220 0.80270 1.90866 1.26940 1.64071 1.57194 1.19579 0.89971 1.01143 0.99712 1.22570 1.00573 0.97606 0.93854 1.42800 1.10103 1.27068 1.23819 1.21698 1.00501 0.92317 0.92146 1.20879 0.94060 1.01354 0.99364 1.21077 0.95026 0.97694 0.99050 1.20394 1.00117 0.95503 0.92944 1.21117 0.82026 0.99240 1.00115 1.71010 1.25752 1.12390 1.06886 1.22674 1.00996 0.94609 1.01038 1.20770 0.88830 0.97953 0.87549 0.93620 0.91790 0.96067 0.92184 0.91015 0.90213 0.78273 0.81569 0.82912 0.83716 0.82699 0.92753 0.91597 0.95922 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 11.20 55.49 0.62 -26.05 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 8 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 9 N -0.59 -15.35 3.00 -172.29 -0.52 -15.86 16 10 C 0.15 3.22 6.51 -3.71 -0.02 3.20 16 11 C -0.13 -2.44 5.74 -26.61 -0.15 -2.59 16 12 C 0.10 1.94 2.42 -26.69 -0.06 1.87 16 13 O -0.33 -6.48 9.89 -40.62 -0.40 -6.88 16 14 C 0.55 9.88 7.94 34.48 0.27 10.15 16 15 O -0.50 -9.69 16.13 -19.28 -0.31 -10.00 16 16 C 0.03 0.43 6.97 -83.47 -0.58 -0.16 16 17 C -0.01 -0.12 11.47 -16.21 -0.19 -0.31 16 18 N -0.37 -3.67 2.93 -62.36 -0.18 -3.85 16 19 C 0.05 0.32 10.93 -16.59 -0.18 0.13 16 20 C -0.14 -0.57 9.98 -39.91 -0.40 -0.97 16 21 C -0.10 -0.52 10.06 -39.54 -0.40 -0.92 16 22 C -0.07 -0.56 10.11 -39.30 -0.40 -0.96 16 23 C 0.22 2.63 7.79 -156.04 -1.22 1.42 16 24 N -0.44 -6.83 11.35 -9.37 -0.11 -6.94 16 25 C -0.15 -3.32 5.72 -26.61 -0.15 -3.47 16 26 C 0.18 4.40 5.30 -3.69 -0.02 4.38 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.65 7.16 -51.93 -0.37 1.27 16 33 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 35 H 0.15 0.14 8.06 -52.48 -0.42 -0.28 16 36 H 0.15 0.30 8.06 -52.49 -0.42 -0.13 16 37 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 2.58 6.07 -51.93 -0.32 2.26 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -34.90 347.36 -9.72 -44.62 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.30 Total: -1.79 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -3.73 Total: 4.54 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.18 Total: -52.70 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.71 Total: -16.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.90 -9.72 -44.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770786710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.719 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds