Wall clock time and date at job start Tue Mar 31 2020 10:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48503 * 109.47611 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47271 * 300.00288 * 3 2 1 6 6 H 1.48496 * 109.47355 * 60.00071 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46926 * 120.63630 * 151.92945 * 9 7 2 11 11 C 1.53191 * 108.89452 * 126.46229 * 10 9 7 12 12 C 1.53036 * 109.31166 * 54.56289 * 11 10 9 13 13 O 1.45209 * 109.46001 * 178.61238 * 12 11 10 14 14 C 1.34748 * 117.00439 * 210.00014 * 13 12 11 15 15 O 1.21515 * 119.99662 * 0.02562 * 14 13 12 16 16 C 1.47449 * 120.00270 * 180.02562 * 14 13 12 17 17 C 1.36638 * 125.92795 * 179.72241 * 16 14 13 18 18 N 1.36162 * 107.08928 * 179.83930 * 17 16 14 19 19 C 1.36698 * 132.28503 * 180.08604 * 18 17 16 20 20 C 1.34834 * 120.64100 * 180.36472 * 19 18 17 21 21 C 1.40582 * 120.34895 * 359.97438 * 20 19 18 22 22 C 1.35889 * 119.72815 * 0.02562 * 21 20 19 23 23 C 1.37282 * 107.35785 * 0.41366 * 18 17 16 24 24 N 1.32219 * 108.38532 * 359.73889 * 23 18 17 25 25 C 1.53043 * 109.54325 * 298.63432 * 12 11 10 26 26 C 1.46973 * 120.64920 * 331.74411 * 9 7 2 27 27 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58277 * 6.60169 * 10 9 7 29 29 H 1.08996 * 109.58760 * 246.32206 * 10 9 7 30 30 H 1.09001 * 109.49711 * 174.51722 * 11 10 9 31 31 H 1.09005 * 109.49935 * 294.61446 * 11 10 9 32 32 H 1.08996 * 109.46111 * 58.64684 * 12 11 10 33 33 H 1.07998 * 126.46170 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.67629 * 0.38000 * 19 18 17 35 35 H 1.08004 * 119.82852 * 180.02562 * 20 19 18 36 36 H 1.07992 * 120.13632 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.32204 * 180.02562 * 22 21 20 38 38 H 1.08995 * 109.49931 * 181.32094 * 25 12 11 39 39 H 1.08997 * 109.49588 * 301.38551 * 25 12 11 40 40 H 1.09000 * 109.46458 * 113.75121 * 26 9 7 41 41 H 1.08992 * 109.71060 * 353.46784 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8154 -3.6529 -0.2015 11 6 2.0655 -4.6207 0.9594 12 6 0.8080 -4.7055 1.8275 13 8 1.0303 -5.6472 2.9103 14 6 -0.0462 -6.3122 3.3734 15 8 -1.1408 -6.1111 2.8855 16 6 0.1040 -7.2839 4.4723 17 6 -0.9010 -8.0179 5.0364 18 7 -0.3374 -8.7880 6.0076 19 6 -0.8634 -9.7018 6.8776 20 6 -0.0740 -10.3375 7.7669 21 6 1.3053 -10.0690 7.8115 22 6 1.8435 -9.1632 6.9533 23 6 1.0056 -8.5043 6.0274 24 7 1.2541 -7.5976 5.0976 25 6 0.4931 -3.3252 2.4087 26 6 0.2252 -2.3428 1.2643 27 1 -0.4849 0.8401 0.0004 28 1 2.7375 -3.5125 -0.7654 29 1 1.0448 -4.0593 -0.8565 30 1 2.3025 -5.6087 0.5647 31 1 2.8993 -4.2592 1.5612 32 1 -0.0310 -5.0432 1.2192 33 1 -1.9453 -7.9936 4.7621 34 1 -1.9215 -9.9169 6.8522 35 1 -0.5033 -11.0574 8.4480 36 1 1.9343 -10.5798 8.5254 37 1 2.9020 -8.9499 6.9789 38 1 -0.3889 -3.3913 3.0456 39 1 1.3415 -2.9762 2.9973 40 1 -0.6769 -2.6412 0.7302 41 1 0.0957 -1.3385 1.6677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770786710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:38 Heat of formation + Delta-G solvation = 10.838961 kcal Electronic energy + Delta-G solvation = -25280.858750 eV Core-core repulsion = 21548.180178 eV Total energy + Delta-G solvation = -3732.678572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.98841 -41.54226 -39.18322 -38.24161 -37.31995 -34.83714 -34.57562 -32.21356 -31.67902 -31.36966 -29.98531 -27.43012 -26.10106 -24.28574 -23.98865 -23.69068 -23.47283 -21.57616 -21.04050 -19.37889 -18.91136 -18.32281 -17.95196 -17.50095 -17.36498 -16.83708 -16.62777 -16.14574 -15.71036 -15.50448 -15.43004 -15.21033 -14.98340 -14.60851 -14.46592 -14.17945 -13.29673 -13.26958 -13.10654 -13.00313 -12.78582 -12.70092 -12.65026 -12.38754 -12.14865 -12.14218 -12.04278 -11.94093 -11.82157 -11.52185 -11.36322 -11.11649 -10.58128 -10.07089 -9.00828 -8.77409 -7.91128 -5.37525 -0.45085 0.12433 0.72923 1.19926 1.46361 1.48259 1.59413 1.71739 2.02325 2.49735 2.51177 2.92286 3.24866 3.37363 3.56611 3.67841 3.75388 3.83610 3.86981 4.07466 4.10811 4.13697 4.19599 4.34854 4.53776 4.60492 4.68279 4.71555 4.78857 4.84615 4.92978 5.03127 5.10436 5.17502 5.22037 5.26168 5.31366 5.42464 5.51758 5.59713 5.64070 5.89227 6.35143 6.39595 6.72114 7.09128 7.78173 8.31847 9.17088 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032315 B = 0.002444 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.249767 B =11455.567832 C =11603.801002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.611 5.611 10 C 0.146 3.854 11 C -0.114 4.114 12 C 0.103 3.897 13 O -0.341 6.341 14 C 0.546 3.454 15 O -0.525 6.525 16 C -0.016 4.016 17 C 0.004 3.996 18 N -0.366 5.366 19 C 0.039 3.961 20 C -0.123 4.123 21 C -0.072 4.072 22 C -0.109 4.109 23 C 0.215 3.785 24 N -0.496 5.496 25 C -0.140 4.140 26 C 0.186 3.814 27 H 0.251 0.749 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.224 0.776 34 H 0.203 0.797 35 H 0.199 0.801 36 H 0.184 0.816 37 H 0.161 0.839 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.001 0.999 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.736 -26.280 19.365 32.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.335 5.335 10 C 0.020 3.980 11 C -0.153 4.153 12 C 0.049 3.951 13 O -0.256 6.256 14 C 0.391 3.609 15 O -0.415 6.415 16 C -0.146 4.146 17 C -0.133 4.133 18 N -0.037 5.037 19 C -0.081 4.081 20 C -0.143 4.143 21 C -0.096 4.096 22 C -0.129 4.129 23 C -0.032 4.032 24 N -0.218 5.218 25 C -0.179 4.179 26 C 0.059 3.941 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.241 0.759 34 H 0.219 0.781 35 H 0.216 0.784 36 H 0.201 0.799 37 H 0.178 0.822 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.020 0.980 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.415 -25.680 18.919 31.899 hybrid contribution -0.760 1.190 -0.366 1.458 sum -1.174 -24.490 18.553 30.747 Atomic orbital electron populations 1.70193 1.06813 1.25982 1.55276 1.25888 0.96108 1.01794 1.01001 0.85150 0.78686 0.79491 0.76767 1.18838 1.21715 1.21757 1.19586 0.93029 0.85671 1.41055 0.90930 1.44381 1.35752 1.02788 1.50540 1.21038 0.98605 0.85164 0.93156 1.22053 0.95567 1.00864 0.96861 1.22772 1.00024 0.86494 0.85846 1.86701 1.36944 1.51650 1.50351 1.20039 0.82220 0.78111 0.80528 1.90832 1.27361 1.65026 1.58237 1.19374 0.91710 1.02815 1.00693 1.22801 1.00694 0.96507 0.93326 1.42983 1.09468 1.27359 1.23895 1.22572 1.02709 0.91318 0.91460 1.21540 0.93479 1.00655 0.98597 1.21660 0.96001 0.94795 0.97099 1.20673 1.00446 0.97594 0.94176 1.21612 0.83443 0.98485 0.99673 1.70852 1.26567 1.15137 1.09209 1.22428 1.00883 0.95010 0.99581 1.20476 0.88244 0.97113 0.88238 0.93975 0.90641 0.95988 0.89232 0.91268 0.91011 0.75945 0.78065 0.78406 0.79892 0.82182 0.92520 0.92010 0.98050 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 11.20 21.65 0.24 -56.94 16 2 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 3 Si 0.97 45.99 29.59 68.60 2.03 48.01 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 7 C -0.26 -14.92 9.58 84.03 0.81 -14.11 16 8 H 0.07 3.95 7.88 -2.91 -0.02 3.93 16 9 N -0.61 -32.38 3.00 -699.01 -2.10 -34.48 16 10 C 0.15 6.34 6.51 86.36 0.56 6.90 16 11 C -0.11 -4.36 5.74 30.67 0.18 -4.18 16 12 C 0.10 4.22 2.42 30.62 0.07 4.30 16 13 O -0.34 -13.64 9.89 -56.58 -0.56 -14.19 16 14 C 0.55 20.55 7.94 70.25 0.56 21.11 16 15 O -0.52 -21.03 16.13 19.79 0.32 -20.71 16 16 C -0.02 -0.52 6.97 40.77 0.28 -0.23 16 17 C 0.00 0.08 11.47 83.65 0.96 1.04 16 18 N -0.37 -6.71 2.93 -351.22 -1.03 -7.74 16 19 C 0.04 0.30 10.93 83.15 0.91 1.20 16 20 C -0.12 -0.37 9.98 22.06 0.22 -0.15 16 21 C -0.07 -0.40 10.06 22.30 0.22 -0.17 16 22 C -0.11 -1.56 10.11 22.45 0.23 -1.33 16 23 C 0.21 5.01 7.79 134.21 1.05 6.06 16 24 N -0.50 -16.00 11.35 -183.55 -2.08 -18.08 16 25 C -0.14 -6.27 5.72 30.67 0.18 -6.09 16 26 C 0.19 9.75 5.30 86.35 0.46 10.21 16 27 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.08 3.07 7.93 -2.39 -0.02 3.05 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.07 3.06 7.16 -2.39 -0.02 3.04 16 33 H 0.22 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.20 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.20 -1.10 8.06 -2.91 -0.02 -1.12 16 36 H 0.18 -0.36 8.06 -2.91 -0.02 -0.38 16 37 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 Total: -1.00 -80.72 347.36 4.96 -75.76 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.04 Total: 6.43 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 7.10 Total: 21.94 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -4.97 Total: -117.24 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.24 Total: -34.90 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -80.72 4.96 -75.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770786710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.598 kcal (2) G-P(sol) polarization free energy of solvation -80.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds