Wall clock time and date at job start Tue Mar 31 2020 11:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35717 * 116.99711 * 2 1 4 4 C 1.38992 * 119.90970 * 90.00293 * 3 2 1 5 5 C 1.50701 * 119.95781 * 359.95049 * 4 3 2 6 6 C 1.37702 * 120.09208 * 179.97438 * 4 3 2 7 7 C 1.39748 * 119.90713 * 359.97438 * 6 4 3 8 8 C 1.47581 * 120.09069 * 179.97438 * 7 6 4 9 9 O 1.21620 * 119.99555 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00193 * 180.02562 * 8 7 6 11 11 C 1.40539 * 119.99929 * 179.97438 * 10 8 7 12 12 C 1.40660 * 126.08700 * 0.02562 * 11 10 8 13 13 N 1.30901 * 108.38813 * 179.97438 * 12 11 10 14 14 N 1.40064 * 108.41486 * 0.02562 * 13 12 11 15 15 C 1.37322 * 126.07107 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99729 * 179.97438 * 15 14 13 17 17 C 1.38982 * 119.99810 * 359.97102 * 15 14 13 18 18 N 1.31294 * 120.00401 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00101 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46728 * 89.99838 * 19 17 15 21 21 H 1.48493 * 109.47482 * 210.00420 * 19 17 15 22 22 H 1.48508 * 109.47001 * 330.00549 * 19 17 15 23 23 C 1.35695 * 126.08380 * 180.02562 * 11 10 8 24 24 C 1.39738 * 119.82190 * 0.25224 * 7 6 4 25 25 C 1.37707 * 119.91004 * 359.49360 * 24 7 6 26 26 C 1.50698 * 119.95842 * 180.25481 * 25 24 7 27 27 H 1.09004 * 109.46592 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47394 * 299.99763 * 1 2 3 29 29 H 1.08993 * 109.47293 * 60.00138 * 1 2 3 30 30 H 1.09001 * 109.47454 * 270.02483 * 5 4 3 31 31 H 1.09007 * 109.46933 * 30.02586 * 5 4 3 32 32 H 1.09006 * 109.47420 * 150.02261 * 5 4 3 33 33 H 1.08000 * 120.05071 * 180.02562 * 6 4 3 34 34 H 0.96996 * 119.99986 * 359.97438 * 10 8 7 35 35 H 1.07997 * 125.80638 * 0.02562 * 12 11 10 36 36 H 0.96999 * 120.00757 * 179.97438 * 18 17 15 37 37 H 1.08005 * 126.24727 * 359.75093 * 23 11 10 38 38 H 1.07999 * 120.04603 * 179.74940 * 24 7 6 39 39 H 1.09004 * 109.47057 * 270.25494 * 26 25 24 40 40 H 1.08998 * 109.47204 * 30.25449 * 26 25 24 41 41 H 1.08999 * 109.47197 * 150.25264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 2.3598 1.8268 1.2048 5 6 2.0154 1.1532 2.5082 6 6 2.9853 3.0535 1.2092 7 6 3.3043 3.6773 0.0000 8 6 3.9742 4.9923 0.0000 9 8 4.2490 5.5347 1.0533 10 7 4.2805 5.5925 -1.1671 11 6 4.9180 6.8450 -1.1671 12 6 5.2937 7.5835 -0.0304 13 7 5.8599 8.6946 -0.4283 14 7 5.8679 8.7102 -1.8288 15 6 6.3768 9.7078 -2.6234 16 1 6.3314 9.6178 -3.6987 17 6 6.9503 10.8333 -2.0438 18 7 7.0060 10.9425 -0.7366 19 14 7.6434 12.1902 -3.1245 20 1 6.5797 13.1858 -3.4121 21 1 8.7687 12.8569 -2.4216 22 1 8.1325 11.6063 -4.3994 23 6 5.2807 7.5572 -2.2637 24 6 2.9820 3.0553 -1.2091 25 6 2.3611 1.8262 -1.2048 26 6 2.0182 1.1518 -2.5081 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.0169 1.4576 2.8218 31 1 2.0407 0.0715 2.3759 32 1 2.7396 1.4431 3.2695 33 1 3.2299 3.5325 2.1457 34 1 4.0610 5.1601 -2.0071 35 1 5.1416 7.2842 0.9961 36 1 7.4065 11.7278 -0.3320 37 1 5.1356 7.2633 -3.2928 38 1 3.2231 3.5360 -2.1456 39 1 1.0199 1.4561 -2.8230 40 1 2.7431 1.4413 -3.2688 41 1 2.0433 0.0702 -2.3752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773296652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:47 Heat of formation + Delta-G solvation = 33.296229 kcal Electronic energy + Delta-G solvation = -25011.618372 eV Core-core repulsion = 21279.913620 eV Total energy + Delta-G solvation = -3731.704752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.65067 -39.79389 -38.65880 -37.03671 -34.40315 -33.76857 -33.14928 -31.53436 -30.20015 -28.31443 -27.89827 -26.77463 -26.44549 -24.92272 -23.27331 -21.17484 -20.98757 -20.05524 -19.38476 -17.90991 -17.58253 -16.84296 -16.61929 -15.93930 -15.45707 -15.07055 -14.60295 -14.47773 -14.19374 -14.04451 -13.77115 -13.69157 -13.43528 -13.28490 -13.13174 -12.99168 -12.86959 -12.45505 -12.12973 -11.77897 -11.66528 -11.58160 -11.46505 -11.40239 -11.25087 -10.94674 -10.53652 -10.19191 -10.17060 -9.26334 -9.17049 -8.82072 -8.80907 -8.68129 -8.05650 -6.69448 -6.55760 -4.22504 0.65644 1.15519 2.73389 2.97927 3.04866 3.10212 3.41720 3.55953 3.64420 3.87611 3.92032 4.47395 4.50576 4.55002 4.68125 4.92348 4.95900 4.98038 5.02297 5.11246 5.15769 5.20494 5.26925 5.35165 5.37572 5.43688 5.52777 5.60442 5.83480 5.98343 6.13408 6.21173 6.25751 6.30415 6.45239 6.51950 6.90537 6.96113 7.12167 7.23795 7.25946 7.85826 8.17172 8.27504 8.62779 8.84211 9.37654 9.66953 10.40223 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034401 B = 0.002455 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.723865 B =11400.963415 C =12118.133948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.334 6.334 3 C 0.105 3.895 4 C -0.107 4.107 5 C -0.111 4.111 6 C -0.056 4.056 7 C -0.113 4.113 8 C 0.539 3.461 9 O -0.532 6.532 10 N -0.616 5.616 11 C -0.060 4.060 12 C -0.031 4.031 13 N -0.260 5.260 14 N -0.142 5.142 15 C -0.322 4.322 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.769 5.769 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.084 4.084 24 C -0.085 4.085 25 C -0.107 4.107 26 C -0.111 4.111 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.396 0.604 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -19.192 -1.911 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.251 6.251 3 C 0.062 3.938 4 C -0.108 4.108 5 C -0.168 4.168 6 C -0.075 4.075 7 C -0.116 4.116 8 C 0.326 3.674 9 O -0.411 6.411 10 N -0.258 5.258 11 C -0.166 4.166 12 C -0.206 4.206 13 N -0.091 5.091 14 N 0.091 4.909 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.172 4.172 18 N -0.396 5.396 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.235 4.235 24 C -0.104 4.104 25 C -0.107 4.107 26 C -0.168 4.168 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.230 0.770 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.884 -17.713 -0.618 20.799 hybrid contribution -0.374 -0.231 -1.321 1.392 sum -11.258 -17.944 -1.939 21.272 Atomic orbital electron populations 1.22981 0.78881 1.03112 1.00873 1.85910 1.19806 1.25037 1.94312 1.18494 0.97741 0.86106 0.91494 1.20118 1.00665 0.94765 0.95254 1.20706 1.01848 1.00814 0.93399 1.21062 0.95163 0.93040 0.98263 1.20075 1.01882 0.95662 0.94000 1.17944 0.80599 0.84838 0.84018 1.90677 1.54237 1.65065 1.31106 1.42415 1.57097 1.18488 1.07751 1.17258 1.15096 0.89918 0.94317 1.24136 1.04052 0.93602 0.98858 1.78256 1.23917 1.18863 0.88098 1.44557 1.31557 1.10402 1.04404 1.19874 1.38662 0.96764 0.90173 0.86599 1.25648 0.96386 0.98895 0.96226 1.70215 1.33145 1.26916 1.09303 0.85824 0.78809 0.79935 0.79556 1.19584 1.20077 1.18803 1.21254 1.12885 0.92410 0.96941 1.21105 0.97658 0.94190 0.97477 1.20045 1.00726 0.94713 0.95227 1.20707 1.01786 1.00978 0.93336 0.88834 0.93455 0.93473 0.91321 0.90858 0.91012 0.84059 0.77010 0.80641 0.91435 0.83669 0.85152 0.91325 0.91105 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 11.13 101.05 1.12 1.37 16 2 O -0.33 -3.34 8.47 -18.86 -0.16 -3.50 16 3 C 0.11 1.19 5.67 -39.02 -0.22 0.97 16 4 C -0.11 -1.25 5.89 -104.54 -0.62 -1.87 16 5 C -0.11 -1.00 9.78 36.01 0.35 -0.65 16 6 C -0.06 -0.76 9.23 -39.21 -0.36 -1.13 16 7 C -0.11 -1.65 5.87 -104.96 -0.62 -2.27 16 8 C 0.54 10.03 7.73 -12.45 -0.10 9.93 16 9 O -0.53 -11.82 13.49 5.26 0.07 -11.75 16 10 N -0.62 -11.35 5.41 -10.92 -0.06 -11.41 16 11 C -0.06 -1.41 6.90 -83.86 -0.58 -1.99 16 12 C -0.03 -0.83 10.85 -17.03 -0.18 -1.01 16 13 N -0.26 -7.66 10.39 30.80 0.32 -7.34 16 14 N -0.14 -3.92 3.74 -11.41 -0.04 -3.96 16 15 C -0.32 -8.56 10.25 -14.82 -0.15 -8.71 16 16 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 17 C 0.05 1.18 5.50 -17.51 -0.10 1.09 16 18 N -0.77 -21.62 11.81 55.49 0.66 -20.96 16 19 Si 0.93 18.96 29.55 -169.99 -5.02 13.94 16 20 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 24 C -0.09 -1.01 9.18 -39.22 -0.36 -1.37 16 25 C -0.11 -1.16 5.89 -104.54 -0.62 -1.77 16 26 C -0.11 -0.91 9.78 36.00 0.35 -0.55 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.14 1.94 7.64 -52.49 -0.40 1.54 16 34 H 0.40 5.66 6.85 -40.82 -0.28 5.38 16 35 H 0.18 4.67 5.91 -52.49 -0.31 4.36 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.15 2.85 8.06 -52.48 -0.42 2.42 16 38 H 0.13 1.27 6.39 -52.49 -0.34 0.93 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.07 0.59 7.52 -51.93 -0.39 0.20 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -34.14 352.26 -6.22 -40.36 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.03 Total: 9.45 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.26 Total: -10.14 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.87 Total: -43.67 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.09 Total: -15.25 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.14 -6.22 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773296652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.656 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds