Wall clock time and date at job start Tue Mar 31 2020 11:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35717 * 116.99711 * 2 1 4 4 C 1.38992 * 119.90970 * 90.00293 * 3 2 1 5 5 C 1.50701 * 119.95781 * 359.95049 * 4 3 2 6 6 C 1.37702 * 120.09208 * 179.97438 * 4 3 2 7 7 C 1.39748 * 119.90713 * 359.97438 * 6 4 3 8 8 C 1.47581 * 120.09069 * 179.97438 * 7 6 4 9 9 O 1.21620 * 119.99555 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00193 * 180.02562 * 8 7 6 11 11 C 1.40539 * 119.99929 * 179.97438 * 10 8 7 12 12 C 1.40660 * 126.08700 * 0.02562 * 11 10 8 13 13 N 1.30901 * 108.38813 * 179.97438 * 12 11 10 14 14 N 1.40064 * 108.41486 * 0.02562 * 13 12 11 15 15 C 1.37322 * 126.07107 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99729 * 179.97438 * 15 14 13 17 17 C 1.38982 * 119.99810 * 359.97102 * 15 14 13 18 18 N 1.31294 * 120.00401 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00101 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46728 * 89.99838 * 19 17 15 21 21 H 1.48493 * 109.47482 * 210.00420 * 19 17 15 22 22 H 1.48508 * 109.47001 * 330.00549 * 19 17 15 23 23 C 1.35695 * 126.08380 * 180.02562 * 11 10 8 24 24 C 1.39738 * 119.82190 * 0.25224 * 7 6 4 25 25 C 1.37707 * 119.91004 * 359.49360 * 24 7 6 26 26 C 1.50698 * 119.95842 * 180.25481 * 25 24 7 27 27 H 1.09004 * 109.46592 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47394 * 299.99763 * 1 2 3 29 29 H 1.08993 * 109.47293 * 60.00138 * 1 2 3 30 30 H 1.09001 * 109.47454 * 270.02483 * 5 4 3 31 31 H 1.09007 * 109.46933 * 30.02586 * 5 4 3 32 32 H 1.09006 * 109.47420 * 150.02261 * 5 4 3 33 33 H 1.08000 * 120.05071 * 180.02562 * 6 4 3 34 34 H 0.96996 * 119.99986 * 359.97438 * 10 8 7 35 35 H 1.07997 * 125.80638 * 0.02562 * 12 11 10 36 36 H 0.96999 * 120.00757 * 179.97438 * 18 17 15 37 37 H 1.08005 * 126.24727 * 359.75093 * 23 11 10 38 38 H 1.07999 * 120.04603 * 179.74940 * 24 7 6 39 39 H 1.09004 * 109.47057 * 270.25494 * 26 25 24 40 40 H 1.08998 * 109.47204 * 30.25449 * 26 25 24 41 41 H 1.08999 * 109.47197 * 150.25264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 2.3598 1.8268 1.2048 5 6 2.0154 1.1532 2.5082 6 6 2.9853 3.0535 1.2092 7 6 3.3043 3.6773 0.0000 8 6 3.9742 4.9923 0.0000 9 8 4.2490 5.5347 1.0533 10 7 4.2805 5.5925 -1.1671 11 6 4.9180 6.8450 -1.1671 12 6 5.2937 7.5835 -0.0304 13 7 5.8599 8.6946 -0.4283 14 7 5.8679 8.7102 -1.8288 15 6 6.3768 9.7078 -2.6234 16 1 6.3314 9.6178 -3.6987 17 6 6.9503 10.8333 -2.0438 18 7 7.0060 10.9425 -0.7366 19 14 7.6434 12.1902 -3.1245 20 1 6.5797 13.1858 -3.4121 21 1 8.7687 12.8569 -2.4216 22 1 8.1325 11.6063 -4.3994 23 6 5.2807 7.5572 -2.2637 24 6 2.9820 3.0553 -1.2091 25 6 2.3611 1.8262 -1.2048 26 6 2.0182 1.1518 -2.5081 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.0169 1.4576 2.8218 31 1 2.0407 0.0715 2.3759 32 1 2.7396 1.4431 3.2695 33 1 3.2299 3.5325 2.1457 34 1 4.0610 5.1601 -2.0071 35 1 5.1416 7.2842 0.9961 36 1 7.4065 11.7278 -0.3320 37 1 5.1356 7.2633 -3.2928 38 1 3.2231 3.5360 -2.1456 39 1 1.0199 1.4561 -2.8230 40 1 2.7431 1.4413 -3.2688 41 1 2.0433 0.0702 -2.3752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773296652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:47 Heat of formation + Delta-G solvation = 11.270753 kcal Electronic energy + Delta-G solvation = -25012.573469 eV Core-core repulsion = 21279.913620 eV Total energy + Delta-G solvation = -3732.659848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90212 -41.30802 -40.13768 -38.01806 -36.04197 -35.11691 -34.54985 -32.65002 -32.10793 -29.66989 -28.94366 -27.66640 -27.37000 -26.65190 -24.53446 -22.86464 -22.10209 -21.51059 -21.12191 -19.35067 -18.72192 -18.25562 -17.66419 -17.39616 -16.66561 -16.59817 -16.13868 -15.92029 -15.36949 -15.13021 -15.00863 -14.90013 -14.75257 -14.40899 -14.12702 -14.04141 -13.91973 -13.48971 -13.33082 -13.10780 -12.92728 -12.86311 -12.81481 -12.56803 -12.36994 -12.25800 -12.08437 -11.87491 -11.03378 -10.94165 -10.86986 -10.78632 -10.11658 -9.71268 -9.63788 -8.54468 -8.47315 -6.24786 -0.36234 0.24163 1.24618 1.40132 1.55332 1.58526 1.84252 2.01387 2.25542 2.32535 2.66945 2.88901 2.92723 3.09241 3.67200 3.70586 3.75939 4.13667 4.25889 4.35678 4.42902 4.47459 4.50847 4.58326 4.61976 4.65714 4.74742 4.77227 4.80886 4.86104 4.99399 5.04308 5.12958 5.21907 5.27970 5.32153 5.33645 5.41793 5.42863 5.60365 5.95048 6.29243 6.48517 6.67679 6.72535 7.30667 7.45513 7.66224 8.52181 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034401 B = 0.002455 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.723865 B =11400.963415 C =12118.133948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.342 6.342 3 C 0.112 3.888 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.068 4.068 7 C -0.135 4.135 8 C 0.540 3.460 9 O -0.576 6.576 10 N -0.607 5.607 11 C -0.047 4.047 12 C -0.060 4.060 13 N -0.310 5.310 14 N -0.166 5.166 15 C -0.353 4.353 16 H 0.143 0.857 17 C -0.008 4.008 18 N -0.825 5.825 19 Si 1.021 2.979 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.243 1.243 23 C -0.079 4.079 24 C -0.077 4.077 25 C -0.108 4.108 26 C -0.109 4.109 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.418 0.582 35 H 0.166 0.834 36 H 0.276 0.724 37 H 0.191 0.809 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.139 -21.243 -4.857 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.259 6.259 3 C 0.068 3.932 4 C -0.114 4.114 5 C -0.166 4.166 6 C -0.087 4.087 7 C -0.138 4.138 8 C 0.329 3.671 9 O -0.457 6.457 10 N -0.252 5.252 11 C -0.153 4.153 12 C -0.235 4.235 13 N -0.142 5.142 14 N 0.065 4.935 15 C -0.484 4.484 16 H 0.160 0.840 17 C -0.220 4.220 18 N -0.453 5.453 19 Si 0.839 3.161 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.166 1.166 23 C -0.229 4.229 24 C -0.096 4.096 25 C -0.109 4.109 26 C -0.166 4.166 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.257 0.743 35 H 0.183 0.817 36 H 0.086 0.914 37 H 0.208 0.792 38 H 0.171 0.829 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.251 -19.831 -3.598 23.586 hybrid contribution -0.122 0.134 -0.356 0.400 sum -12.373 -19.697 -3.954 23.594 Atomic orbital electron populations 1.23239 0.76818 1.04943 1.01449 1.85887 1.21628 1.24078 1.94338 1.18677 0.96866 0.86157 0.91480 1.20327 1.00140 0.94093 0.96799 1.20747 1.02632 1.00946 0.92226 1.21051 0.96053 0.94043 0.97581 1.19767 1.04130 0.94181 0.95725 1.18645 0.79433 0.85798 0.83184 1.90655 1.55833 1.66497 1.32714 1.42302 1.56838 1.16940 1.09114 1.17325 1.13732 0.91193 0.93024 1.24168 1.05398 0.94342 0.99579 1.78153 1.25641 1.20379 0.90010 1.44862 1.32844 1.11930 1.03884 1.20651 1.39131 0.97158 0.91424 0.83957 1.26918 0.96035 1.01457 0.97560 1.70402 1.34947 1.28074 1.11886 0.84575 0.77743 0.75938 0.77829 1.18849 1.20291 1.16586 1.22004 1.10979 0.90987 0.98920 1.21288 0.96774 0.94460 0.97089 1.20367 0.99756 0.94250 0.96486 1.20775 1.03039 1.00803 0.91951 0.86471 0.93125 0.92687 0.89954 0.90111 0.90894 0.85412 0.74346 0.81675 0.91379 0.79179 0.82907 0.89732 0.89793 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.13 113.37 1.26 1.56 16 2 O -0.34 -5.85 8.47 -90.39 -0.77 -6.61 16 3 C 0.11 2.28 5.67 22.63 0.13 2.41 16 4 C -0.11 -2.50 5.89 -19.81 -0.12 -2.62 16 5 C -0.11 -1.82 9.78 71.24 0.70 -1.12 16 6 C -0.07 -1.87 9.23 22.51 0.21 -1.66 16 7 C -0.13 -3.89 5.87 -20.08 -0.12 -4.01 16 8 C 0.54 20.43 7.73 86.71 0.67 21.11 16 9 O -0.58 -26.93 13.49 -4.09 -0.06 -26.99 16 10 N -0.61 -22.02 5.41 -306.73 -1.66 -23.68 16 11 C -0.05 -2.20 6.90 37.75 0.26 -1.94 16 12 C -0.06 -3.36 10.85 85.42 0.93 -2.44 16 13 N -0.31 -19.08 10.39 -56.46 -0.59 -19.66 16 14 N -0.17 -9.34 3.74 -190.00 -0.71 -10.05 16 15 C -0.35 -18.73 10.25 84.01 0.86 -17.87 16 16 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16 17 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 18 N -0.83 -48.21 11.81 21.66 0.26 -47.95 16 19 Si 1.02 38.69 29.55 68.60 2.03 40.72 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.24 -8.29 7.11 99.48 0.71 -7.59 16 23 C -0.08 -3.66 11.49 83.38 0.96 -2.70 16 24 C -0.08 -1.67 9.18 22.51 0.21 -1.46 16 25 C -0.11 -2.04 5.89 -19.81 -0.12 -2.16 16 26 C -0.11 -1.36 9.78 71.24 0.70 -0.66 16 27 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.22 7.52 -2.38 -0.02 1.21 16 32 H 0.07 1.19 8.08 -2.38 -0.02 1.17 16 33 H 0.13 3.75 7.64 -2.91 -0.02 3.72 16 34 H 0.42 11.02 6.85 -92.71 -0.63 10.38 16 35 H 0.17 9.46 5.91 -2.91 -0.02 9.44 16 36 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.19 6.86 8.06 -2.91 -0.02 6.84 16 38 H 0.15 2.47 6.39 -2.91 -0.02 2.45 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 41 H 0.08 0.94 7.52 -2.39 -0.02 0.93 16 Total: -1.00 -78.95 352.26 5.94 -73.01 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.44 Total: 34.74 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 6.99 Total: -13.53 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -2.70 Total: -101.35 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.82 Total: -33.60 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -78.95 5.94 -73.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773296652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.284 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds