Wall clock time and date at job start Tue Mar 31 2020 10:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52998 * 115.55874 * 184.88728 * 3 2 1 5 5 N 1.46500 * 109.47344 * 325.68763 * 4 3 2 6 6 C 1.34777 * 120.00279 * 180.02562 * 5 4 3 7 7 O 1.21585 * 119.99500 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00017 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99792 * 179.97438 * 8 6 5 10 10 C 1.50693 * 109.46896 * 180.02562 * 9 8 6 11 11 C 1.38301 * 119.92968 * 269.72591 * 10 9 8 12 12 C 1.38104 * 120.06819 * 179.72777 * 11 10 9 13 13 C 1.38883 * 119.92928 * 0.56870 * 12 11 10 14 14 O 1.35751 * 120.06714 * 179.68226 * 13 12 11 15 15 C 1.34839 * 116.99508 * 174.48951 * 14 13 12 16 16 H 1.07990 * 120.00051 * 5.05719 * 15 14 13 17 17 C 1.38652 * 119.99676 * 185.05526 * 15 14 13 18 18 N 1.31556 * 120.00037 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99956 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47151 * 89.99801 * 19 17 15 21 21 H 1.48500 * 109.46932 * 209.99616 * 19 17 15 22 22 H 1.48500 * 109.47176 * 329.99499 * 19 17 15 23 23 C 1.38875 * 119.85926 * 359.70854 * 13 12 11 24 24 C 1.38102 * 119.93512 * 359.97438 * 23 13 12 25 25 C 1.52993 * 117.49618 * 330.57430 * 3 2 1 26 26 C 1.53001 * 60.03111 * 107.47907 * 25 3 2 27 27 H 1.09001 * 109.47281 * 85.68714 * 4 3 2 28 28 H 1.09001 * 109.47171 * 205.68819 * 4 3 2 29 29 H 0.97001 * 119.99796 * 0.02562 * 5 4 3 30 30 H 0.96991 * 120.00007 * 0.02562 * 8 6 5 31 31 H 1.09005 * 109.47272 * 300.00416 * 9 8 6 32 32 H 1.08998 * 109.46923 * 60.00194 * 9 8 6 33 33 H 1.07995 * 119.96851 * 359.97438 * 11 10 9 34 34 H 1.08003 * 120.03693 * 180.27509 * 12 11 10 35 35 H 0.96999 * 120.00196 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.03259 * 179.97438 * 23 13 12 37 37 H 1.08002 * 119.96657 * 180.02562 * 24 23 13 38 38 H 1.09007 * 117.50004 * 214.98188 * 25 3 2 39 39 H 1.09004 * 117.50653 * 359.97438 * 25 3 2 40 40 H 1.08995 * 117.49905 * 107.49770 * 26 25 3 41 41 H 1.08996 * 117.49640 * 252.51637 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2675 1.3762 0.1176 5 7 2.4486 2.3716 -0.5787 6 6 2.8365 3.6620 -0.6081 7 8 3.8658 4.0000 -0.0564 8 7 2.0833 4.5776 -1.2492 9 6 2.5046 5.9803 -1.2807 10 6 1.4961 6.7905 -2.0536 11 6 1.6470 6.9603 -3.4178 12 6 0.7213 7.6975 -4.1298 13 6 -0.3555 8.2784 -3.4726 14 8 -1.2635 9.0090 -4.1688 15 6 -2.3437 9.4486 -3.4920 16 1 -2.4167 9.2857 -2.4270 17 6 -3.3607 10.1097 -4.1636 18 7 -4.4149 10.5382 -3.5035 19 14 -3.2346 10.3908 -6.0061 20 1 -3.8436 9.2428 -6.7248 21 1 -3.9542 11.6387 -6.3668 22 1 -1.8058 10.5143 -6.3914 23 6 -0.5010 8.1107 -2.1017 24 6 0.4245 7.3669 -1.3963 25 6 3.3149 -1.1811 0.6667 26 6 3.3152 -1.0516 -0.8578 27 1 3.3545 1.6488 1.1694 28 1 4.2598 1.3431 -0.3324 29 1 1.6272 2.1019 -1.0185 30 1 1.2620 4.3079 -1.6890 31 1 2.5731 6.3621 -0.2620 32 1 3.4790 6.0562 -1.7634 33 1 2.4873 6.5128 -3.9274 34 1 0.8373 7.8261 -5.1959 35 1 -5.1266 11.0003 -3.9734 36 1 -1.3371 8.5616 -1.5877 37 1 0.3116 7.2359 -0.3303 38 1 4.2500 -0.9786 1.1892 39 1 2.6901 -1.9589 1.1058 40 1 4.2502 -0.7639 -1.3383 41 1 2.6902 -1.7440 -1.4217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797446741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:32 Heat of formation + Delta-G solvation = 25.624895 kcal Electronic energy + Delta-G solvation = -24052.145981 eV Core-core repulsion = 20320.108575 eV Total energy + Delta-G solvation = -3732.037406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31344 -39.37207 -38.93413 -37.07389 -36.10710 -34.54382 -34.35311 -32.47722 -30.42134 -30.17860 -27.70389 -25.85741 -24.42591 -23.64821 -23.19438 -22.18804 -21.01433 -20.61325 -18.75161 -18.01378 -17.88906 -17.33073 -16.31935 -15.79466 -15.56067 -15.00905 -14.92969 -14.48109 -14.32724 -14.22533 -14.05895 -13.91125 -13.86284 -13.51615 -13.38374 -13.28374 -12.83017 -12.70634 -12.36697 -12.27939 -12.19328 -11.98378 -11.48191 -11.27449 -10.96502 -10.85141 -10.80675 -10.77324 -10.29421 -10.22646 -9.49238 -9.43280 -8.95797 -8.85822 -8.38165 -7.49067 -6.50195 -4.17231 1.87551 2.00200 2.02532 2.22195 2.69572 3.13714 3.16612 3.19926 3.20453 3.28335 3.34421 3.81370 4.10946 4.16329 4.18024 4.29427 4.48841 4.74398 4.92193 4.96372 5.01720 5.13024 5.18330 5.21363 5.30324 5.36541 5.40181 5.56175 5.73707 5.84903 6.02747 6.16173 6.24811 6.44657 6.51165 6.67335 6.74415 6.93065 7.06502 7.12473 7.18949 7.49620 7.70442 7.91218 7.94124 8.51276 8.84267 9.44824 10.56944 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002191 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.478562 B =12776.907226 C =13389.630606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.232 3.768 3 C -0.069 4.069 4 C 0.186 3.814 5 N -0.753 5.753 6 C 0.704 3.296 7 O -0.594 6.594 8 N -0.737 5.737 9 C 0.197 3.803 10 C -0.207 4.207 11 C -0.055 4.055 12 C -0.196 4.196 13 C 0.167 3.833 14 O -0.213 6.213 15 C -0.392 4.392 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.224 4.224 24 C -0.051 4.051 25 C -0.135 4.135 26 C -0.142 4.142 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.395 0.605 30 H 0.398 0.602 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.281 0.719 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.638 -21.183 4.997 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.086 4.086 3 C -0.073 4.073 4 C 0.060 3.940 5 N -0.410 5.410 6 C 0.404 3.596 7 O -0.472 6.472 8 N -0.392 5.392 9 C 0.074 3.926 10 C -0.208 4.208 11 C -0.074 4.074 12 C -0.215 4.215 13 C 0.114 3.886 14 O -0.117 6.117 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.512 5.512 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.244 4.244 24 C -0.070 4.070 25 C -0.174 4.174 26 C -0.180 4.180 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.229 0.771 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.620 -20.615 5.268 26.396 hybrid contribution -0.763 0.016 -1.017 1.272 sum 14.856 -20.600 4.251 25.751 Atomic orbital electron populations 1.81360 1.11941 1.07043 1.08432 1.27631 0.93288 0.94009 0.93623 1.18685 0.82446 0.94413 1.11786 1.20662 0.93382 0.81513 0.98437 1.45131 1.28305 1.06916 1.60657 1.15925 0.83552 0.80353 0.79749 1.90918 1.25509 1.79881 1.50940 1.45498 1.27188 1.08314 1.58193 1.19862 0.95757 0.77461 0.99525 1.19291 0.99898 1.07388 0.94228 1.20541 0.97232 0.96638 0.92987 1.20218 0.96587 1.04903 0.99792 1.19189 0.89526 0.89328 0.90602 1.83576 1.30033 1.59441 1.38639 1.20788 0.94379 1.36733 0.94795 0.87496 1.24496 0.93753 0.95419 1.00317 1.69642 1.07703 1.36711 1.37159 0.86169 0.79503 0.77960 0.83215 1.19821 1.20673 1.18309 1.21284 1.02838 1.06019 0.94215 1.20714 0.92754 0.94896 0.98657 1.23232 1.02123 0.96060 0.96010 1.23372 1.02122 0.98406 0.94105 0.90097 0.89426 0.77121 0.76841 0.91548 0.91487 0.86721 0.86364 0.90901 0.84801 0.87087 0.86190 0.87394 0.86280 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.73 18.54 42.15 0.78 -3.94 16 2 C 0.23 1.93 13.48 -20.76 -0.28 1.65 16 3 C -0.07 -0.34 2.44 -157.26 -0.38 -0.73 16 4 C 0.19 1.23 5.80 -4.04 -0.02 1.21 16 5 N -0.75 -6.97 5.34 -65.23 -0.35 -7.31 16 6 C 0.70 8.92 8.57 -86.92 -0.74 8.17 16 7 O -0.59 -9.48 16.34 5.29 0.09 -9.39 16 8 N -0.74 -9.00 5.55 -66.42 -0.37 -9.37 16 9 C 0.20 2.64 5.80 -5.20 -0.03 2.61 16 10 C -0.21 -3.17 5.25 -104.58 -0.55 -3.71 16 11 C -0.06 -0.86 9.69 -39.61 -0.38 -1.25 16 12 C -0.20 -3.65 9.99 -39.39 -0.39 -4.04 16 13 C 0.17 3.68 6.65 -39.11 -0.26 3.42 16 14 O -0.21 -5.44 8.59 0.02 0.00 -5.44 16 15 C -0.39 -10.77 9.95 30.89 0.31 -10.47 16 16 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -24.86 13.96 55.48 0.77 -24.08 16 19 Si 0.91 21.23 28.62 -169.99 -4.86 16.36 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.22 -4.62 9.17 -39.40 -0.36 -4.98 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 C -0.14 -0.31 9.93 -26.73 -0.27 -0.58 16 26 C -0.14 -0.37 9.86 -26.69 -0.26 -0.63 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.51 7.90 -51.93 -0.41 0.10 16 29 H 0.39 3.36 7.24 -40.82 -0.30 3.06 16 30 H 0.40 4.43 8.48 -40.82 -0.35 4.08 16 31 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.12 2.06 8.06 -52.48 -0.42 1.63 16 35 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 2.93 5.64 -52.48 -0.30 2.63 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.12 0.16 8.05 -51.93 -0.42 -0.25 16 41 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -32.80 363.98 -7.55 -40.35 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.99 Total: 6.26 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.11 Total: -8.90 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.84 Total: -44.71 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.09 Total: -14.83 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.80 -7.55 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797446741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.970 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds