Wall clock time and date at job start Tue Mar 31 2020 10:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47085 * 299.99836 * 3 2 1 6 6 H 1.48506 * 109.47226 * 59.99471 * 3 2 1 7 7 C 1.37880 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 173.55342 * 7 2 1 9 9 C 1.50704 * 119.99910 * 353.55294 * 7 2 1 10 10 C 1.52996 * 115.54873 * 85.40719 * 9 7 2 11 11 N 1.46510 * 109.47096 * 65.13866 * 10 9 7 12 12 C 1.34771 * 119.99660 * 178.27356 * 11 10 9 13 13 O 1.21276 * 120.00456 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99700 * 180.02562 * 12 11 10 15 15 H 1.08999 * 110.88485 * 301.17886 * 14 12 11 16 16 C 1.54732 * 110.97322 * 64.99946 * 14 12 11 17 17 C 1.51690 * 102.54995 * 93.89387 * 16 14 12 18 18 C 1.47641 * 125.86671 * 195.39099 * 17 16 14 19 19 C 1.40042 * 120.56690 * 179.97438 * 18 17 16 20 20 C 1.38352 * 118.29049 * 180.02562 * 19 18 17 21 21 C 1.38346 * 119.30751 * 0.25443 * 20 19 18 22 22 N 1.31918 * 121.09243 * 359.45411 * 21 20 19 23 23 C 1.31703 * 121.87821 * 0.57997 * 22 21 20 24 24 N 1.29077 * 108.26553 * 15.65476 * 17 16 14 25 25 O 1.41393 * 112.88100 * 359.88350 * 24 17 16 26 26 C 1.53001 * 117.49593 * 231.07295 * 9 7 2 27 27 C 1.53002 * 117.49859 * 299.73243 * 9 7 2 28 28 H 0.96996 * 119.99836 * 5.05926 * 1 2 3 29 29 H 1.08999 * 109.47032 * 305.14089 * 10 9 7 30 30 H 1.08997 * 109.47022 * 185.13408 * 10 9 7 31 31 H 0.96998 * 119.99726 * 358.28031 * 11 10 9 32 32 H 1.08995 * 110.79788 * 335.62675 * 16 14 12 33 33 H 1.08998 * 110.79282 * 212.15453 * 16 14 12 34 34 H 1.08002 * 120.85651 * 0.02562 * 19 18 17 35 35 H 1.07997 * 120.34802 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.45527 * 179.74873 * 21 20 19 37 37 H 1.07999 * 119.72035 * 179.70322 * 23 22 21 38 38 H 1.08999 * 117.49996 * 215.00109 * 26 9 7 39 39 H 1.08999 * 117.49934 * 0.02726 * 26 9 7 40 40 H 1.09000 * 117.49986 * 359.97438 * 27 9 7 41 41 H 1.09001 * 117.49400 * 144.99683 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1972 -0.1045 9 6 1.2580 -2.4950 0.1477 10 6 0.7020 -3.0870 -1.1489 11 7 1.8111 -3.4601 -2.0305 12 6 1.5598 -4.0376 -3.2220 13 8 0.4157 -4.2479 -3.5648 14 6 2.7007 -4.4219 -4.1286 15 1 3.3064 -3.5516 -4.3813 16 6 3.5671 -5.5325 -3.4881 17 6 2.9615 -6.7975 -4.0661 18 6 3.1790 -8.1686 -3.5636 19 6 2.5611 -9.2611 -4.1846 20 6 2.7973 -10.5253 -3.6744 21 6 3.6241 -10.6680 -2.5745 22 7 4.1976 -9.6210 -2.0129 23 6 4.0037 -8.3979 -2.4612 24 7 2.2277 -6.4698 -5.0762 25 8 2.2164 -5.0768 -5.3185 26 6 1.7470 -3.4728 1.2181 27 6 0.4417 -2.7005 1.4253 28 1 -0.4850 0.8368 -0.0741 29 1 0.0754 -2.3470 -1.6467 30 1 0.1074 -3.9711 -0.9190 31 1 2.7262 -3.2917 -1.7564 32 1 3.4724 -5.5194 -2.4023 33 1 4.6101 -5.4309 -3.7879 34 1 1.9166 -9.1205 -5.0398 35 1 2.3374 -11.3912 -4.1273 36 1 3.8070 -11.6533 -2.1717 37 1 4.4871 -7.5654 -1.9717 38 1 1.6724 -4.5379 0.9986 39 1 2.6082 -3.1750 1.8161 40 1 0.4449 -1.8949 2.1596 41 1 -0.4916 -3.2574 1.3420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:27 Heat of formation + Delta-G solvation = 46.282381 kcal Electronic energy + Delta-G solvation = -25472.514981 eV Core-core repulsion = 21741.373350 eV Total energy + Delta-G solvation = -3731.141630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96533 -40.13181 -38.44158 -36.69844 -34.33525 -33.53620 -32.55917 -32.05028 -31.01221 -30.77100 -26.72525 -25.51185 -24.61035 -24.29018 -23.26656 -21.28904 -20.59125 -19.95447 -19.42903 -17.71148 -17.52331 -16.87734 -16.49648 -16.12669 -15.74250 -15.27349 -15.00385 -14.81059 -14.48629 -14.23047 -14.16768 -13.66518 -13.49304 -13.38253 -13.28714 -12.77291 -12.58899 -12.24073 -12.16383 -11.70813 -11.63504 -11.08319 -11.07096 -10.98573 -10.81168 -10.58268 -10.34660 -10.10119 -9.91292 -9.73283 -9.42778 -9.05495 -8.91402 -8.57983 -8.40100 -8.19832 -6.14894 -4.24465 0.21426 0.86043 1.92102 2.67883 3.02725 3.20272 3.29855 3.30899 3.45375 3.50323 3.63938 4.04253 4.17259 4.29106 4.30800 4.46933 4.53717 4.72682 4.80474 4.96020 5.07126 5.13579 5.20940 5.23909 5.30378 5.35868 5.51577 5.72917 5.77328 5.93619 6.21305 6.24535 6.37356 6.45640 6.60622 6.76779 7.01941 7.07051 7.15506 7.33891 7.39883 7.52505 7.74197 8.08283 8.25139 8.65746 8.77084 9.43217 10.92886 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.003215 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.313861 B = 8707.803072 C = 9402.786496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.696 5.696 12 C 0.487 3.513 13 O -0.531 6.531 14 C 0.026 3.974 15 H 0.144 0.856 16 C -0.140 4.140 17 C 0.118 3.882 18 C -0.087 4.087 19 C -0.038 4.038 20 C -0.174 4.174 21 C 0.112 3.888 22 N -0.482 5.482 23 C 0.135 3.865 24 N -0.269 5.269 25 O -0.160 6.160 26 C -0.210 4.210 27 C -0.147 4.147 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.401 0.599 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 -17.160 -5.507 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.041 3.959 11 N -0.347 5.347 12 C 0.270 3.730 13 O -0.407 6.407 14 C -0.037 4.037 15 H 0.161 0.839 16 C -0.179 4.179 17 C -0.072 4.072 18 C -0.090 4.090 19 C -0.065 4.065 20 C -0.194 4.194 21 C -0.045 4.045 22 N -0.190 5.190 23 C -0.025 4.025 24 N -0.008 5.008 25 O -0.179 6.179 26 C -0.248 4.248 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.235 0.765 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.561 -17.487 -5.984 20.369 hybrid contribution 0.621 1.738 0.077 1.847 sum 9.182 -15.750 -5.907 19.164 Atomic orbital electron populations 1.69981 1.05935 1.26964 1.47966 1.25002 0.94808 0.99042 0.94201 0.86571 0.80140 0.83773 0.77714 1.19672 1.20997 1.20914 1.20365 0.92849 0.88538 1.52295 0.92066 1.19028 0.98723 0.93987 0.85601 1.21052 0.87130 0.97034 0.90721 1.45938 1.11730 1.59709 1.17290 1.20555 0.90255 0.79549 0.82679 1.90725 1.21987 1.54343 1.73674 1.23715 0.94043 0.98383 0.87527 0.83871 1.23026 1.01907 0.88611 1.04375 1.23991 0.93853 0.94331 0.95069 1.18823 1.01975 0.89429 0.98789 1.21841 0.95193 0.91480 0.98032 1.22150 1.00680 0.98051 0.98472 1.22993 0.91569 0.98037 0.91887 1.67765 1.22233 0.99053 1.29925 1.23002 0.93147 0.95040 0.91262 1.78368 1.12705 0.94695 1.15058 1.91331 1.85277 1.09957 1.31322 1.23032 0.98771 0.95573 1.07379 1.22497 0.92286 1.01085 1.02669 0.92794 0.90752 0.94410 0.76534 0.86939 0.86411 0.83762 0.83996 0.82184 0.81837 0.91694 0.90237 0.89733 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.74 12.91 55.43 0.72 -23.03 16 2 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 3 Si 0.89 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.38 8.63 -34.44 -0.30 -12.68 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.61 1.38 -155.66 -0.21 0.40 16 10 C 0.16 3.58 5.50 -4.04 -0.02 3.56 16 11 N -0.70 -12.58 5.32 -60.29 -0.32 -12.90 16 12 C 0.49 8.92 7.18 -10.99 -0.08 8.85 16 13 O -0.53 -12.30 16.59 -13.29 -0.22 -12.52 16 14 C 0.03 0.36 4.23 -26.97 -0.11 0.24 16 15 H 0.14 1.54 8.14 -51.93 -0.42 1.11 16 16 C -0.14 -1.41 5.83 -26.48 -0.15 -1.56 16 17 C 0.12 1.44 7.17 -79.43 -0.57 0.87 16 18 C -0.09 -0.91 5.89 -104.89 -0.62 -1.53 16 19 C -0.04 -0.36 9.82 -38.86 -0.38 -0.74 16 20 C -0.17 -1.26 10.10 -39.50 -0.40 -1.66 16 21 C 0.11 0.87 11.17 -17.47 -0.20 0.67 16 22 N -0.48 -4.78 10.35 -12.90 -0.13 -4.91 16 23 C 0.14 1.28 10.79 -17.11 -0.18 1.10 16 24 N -0.27 -4.11 12.19 35.30 0.43 -3.68 16 25 O -0.16 -2.66 11.82 -30.22 -0.36 -3.02 16 26 C -0.21 -4.13 9.96 -26.69 -0.27 -4.40 16 27 C -0.15 -3.26 9.42 -26.69 -0.25 -3.51 16 28 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 29 H 0.07 1.90 8.14 -51.93 -0.42 1.48 16 30 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.40 6.24 8.37 -40.82 -0.34 5.90 16 32 H 0.11 1.02 7.62 -51.93 -0.40 0.62 16 33 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.14 1.32 7.92 -52.49 -0.42 0.91 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.16 1.18 7.40 -52.49 -0.39 0.79 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -33.13 361.13 -8.62 -41.75 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.31 Total: 6.48 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.84 Total: -8.58 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.69 Total: -44.52 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.58 Total: -15.54 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.13 -8.62 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.029 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds