Wall clock time and date at job start Tue Mar 31 2020 10:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47347 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47085 * 299.99836 * 3 2 1 6 6 H 1.48506 * 109.47226 * 59.99471 * 3 2 1 7 7 C 1.37880 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 173.55342 * 7 2 1 9 9 C 1.50704 * 119.99910 * 353.55294 * 7 2 1 10 10 C 1.52996 * 115.54873 * 85.40719 * 9 7 2 11 11 N 1.46510 * 109.47096 * 65.13866 * 10 9 7 12 12 C 1.34771 * 119.99660 * 178.27356 * 11 10 9 13 13 O 1.21276 * 120.00456 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99700 * 180.02562 * 12 11 10 15 15 H 1.08999 * 110.88485 * 301.17886 * 14 12 11 16 16 C 1.54732 * 110.97322 * 64.99946 * 14 12 11 17 17 C 1.51690 * 102.54995 * 93.89387 * 16 14 12 18 18 C 1.47641 * 125.86671 * 195.39099 * 17 16 14 19 19 C 1.40042 * 120.56690 * 179.97438 * 18 17 16 20 20 C 1.38352 * 118.29049 * 180.02562 * 19 18 17 21 21 C 1.38346 * 119.30751 * 0.25443 * 20 19 18 22 22 N 1.31918 * 121.09243 * 359.45411 * 21 20 19 23 23 C 1.31703 * 121.87821 * 0.57997 * 22 21 20 24 24 N 1.29077 * 108.26553 * 15.65476 * 17 16 14 25 25 O 1.41393 * 112.88100 * 359.88350 * 24 17 16 26 26 C 1.53001 * 117.49593 * 231.07295 * 9 7 2 27 27 C 1.53002 * 117.49859 * 299.73243 * 9 7 2 28 28 H 0.96996 * 119.99836 * 5.05926 * 1 2 3 29 29 H 1.08999 * 109.47032 * 305.14089 * 10 9 7 30 30 H 1.08997 * 109.47022 * 185.13408 * 10 9 7 31 31 H 0.96998 * 119.99726 * 358.28031 * 11 10 9 32 32 H 1.08995 * 110.79788 * 335.62675 * 16 14 12 33 33 H 1.08998 * 110.79282 * 212.15453 * 16 14 12 34 34 H 1.08002 * 120.85651 * 0.02562 * 19 18 17 35 35 H 1.07997 * 120.34802 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.45527 * 179.74873 * 21 20 19 37 37 H 1.07999 * 119.72035 * 179.70322 * 23 22 21 38 38 H 1.08999 * 117.49996 * 215.00109 * 26 9 7 39 39 H 1.08999 * 117.49934 * 0.02726 * 26 9 7 40 40 H 1.09000 * 117.49986 * 359.97438 * 27 9 7 41 41 H 1.09001 * 117.49400 * 144.99683 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1972 -0.1045 9 6 1.2580 -2.4950 0.1477 10 6 0.7020 -3.0870 -1.1489 11 7 1.8111 -3.4601 -2.0305 12 6 1.5598 -4.0376 -3.2220 13 8 0.4157 -4.2479 -3.5648 14 6 2.7007 -4.4219 -4.1286 15 1 3.3064 -3.5516 -4.3813 16 6 3.5671 -5.5325 -3.4881 17 6 2.9615 -6.7975 -4.0661 18 6 3.1790 -8.1686 -3.5636 19 6 2.5611 -9.2611 -4.1846 20 6 2.7973 -10.5253 -3.6744 21 6 3.6241 -10.6680 -2.5745 22 7 4.1976 -9.6210 -2.0129 23 6 4.0037 -8.3979 -2.4612 24 7 2.2277 -6.4698 -5.0762 25 8 2.2164 -5.0768 -5.3185 26 6 1.7470 -3.4728 1.2181 27 6 0.4417 -2.7005 1.4253 28 1 -0.4850 0.8368 -0.0741 29 1 0.0754 -2.3470 -1.6467 30 1 0.1074 -3.9711 -0.9190 31 1 2.7262 -3.2917 -1.7564 32 1 3.4724 -5.5194 -2.4023 33 1 4.6101 -5.4309 -3.7879 34 1 1.9166 -9.1205 -5.0398 35 1 2.3374 -11.3912 -4.1273 36 1 3.8070 -11.6533 -2.1717 37 1 4.4871 -7.5654 -1.9717 38 1 1.6724 -4.5379 0.9986 39 1 2.6082 -3.1750 1.8161 40 1 0.4449 -1.8949 2.1596 41 1 -0.4916 -3.2574 1.3420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:26 Heat of formation + Delta-G solvation = 24.593807 kcal Electronic energy + Delta-G solvation = -25473.455468 eV Core-core repulsion = 21741.373350 eV Total energy + Delta-G solvation = -3732.082117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97090 -40.96482 -39.83293 -38.40472 -35.30999 -35.04489 -33.97688 -33.24681 -32.07698 -31.55311 -28.31253 -27.30632 -25.58724 -25.13023 -24.11237 -22.96895 -21.63738 -21.40128 -20.97666 -18.98072 -18.39936 -17.99686 -17.58353 -17.24404 -16.90502 -16.65037 -16.38549 -16.21077 -15.95717 -15.31517 -15.10319 -14.95833 -14.63910 -14.40291 -14.15544 -14.13152 -13.83895 -13.55177 -13.46405 -13.08057 -12.93657 -12.85779 -12.76848 -12.31684 -12.07365 -12.02690 -11.79259 -11.48684 -10.94696 -10.86276 -10.59933 -10.56812 -10.46728 -10.10462 -9.92084 -9.79924 -8.10074 -6.23519 -0.51887 0.21976 1.09422 1.42150 1.44273 1.46612 1.55236 1.85718 2.14310 2.42994 2.79352 2.83293 3.18865 3.20778 3.30163 3.44625 3.56346 3.73807 3.82258 3.93745 4.05503 4.14244 4.22763 4.32660 4.44821 4.53281 4.54597 4.62861 4.68967 4.70191 4.78095 4.98114 5.01188 5.04423 5.14241 5.26828 5.50245 5.57810 5.61444 5.64920 5.78272 6.14495 6.35635 6.63613 6.85339 6.88954 7.24219 7.46992 8.97639 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.003215 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.313861 B = 8707.803072 C = 9402.786496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.949 3.051 4 H -0.256 1.256 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.007 3.993 10 C 0.179 3.821 11 N -0.684 5.684 12 C 0.483 3.517 13 O -0.588 6.588 14 C 0.028 3.972 15 H 0.178 0.822 16 C -0.131 4.131 17 C 0.135 3.865 18 C -0.111 4.111 19 C -0.051 4.051 20 C -0.168 4.168 21 C 0.115 3.885 22 N -0.504 5.504 23 C 0.138 3.862 24 N -0.316 5.316 25 O -0.195 6.195 26 C -0.170 4.170 27 C -0.165 4.165 28 H 0.257 0.743 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.416 0.584 32 H 0.129 0.871 33 H 0.164 0.836 34 H 0.138 0.862 35 H 0.172 0.828 36 H 0.192 0.808 37 H 0.186 0.814 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 -18.938 -4.737 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.539 4.539 8 H 0.089 0.911 9 C 0.006 3.994 10 C 0.055 3.945 11 N -0.336 5.336 12 C 0.269 3.731 13 O -0.468 6.468 14 C -0.034 4.034 15 H 0.195 0.805 16 C -0.170 4.170 17 C -0.055 4.055 18 C -0.114 4.114 19 C -0.079 4.079 20 C -0.187 4.187 21 C -0.042 4.042 22 N -0.213 5.213 23 C -0.021 4.021 24 N -0.058 5.058 25 O -0.211 6.211 26 C -0.207 4.207 27 C -0.203 4.203 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.253 0.747 32 H 0.147 0.853 33 H 0.182 0.818 34 H 0.156 0.844 35 H 0.189 0.811 36 H 0.209 0.791 37 H 0.203 0.797 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.850 -19.254 -5.209 23.201 hybrid contribution -0.383 2.113 -0.115 2.151 sum 11.467 -17.141 -5.325 21.299 Atomic orbital electron populations 1.70121 1.07454 1.27231 1.49993 1.25741 0.95386 1.02239 0.94452 0.85637 0.79801 0.80075 0.76891 1.17915 1.21702 1.21470 1.20734 0.93394 0.89257 1.50527 0.91050 1.19029 0.99717 0.94667 0.85956 1.20576 0.87761 0.95356 0.90789 1.45736 1.11484 1.59338 1.16994 1.21520 0.90939 0.78012 0.82636 1.90694 1.24847 1.56463 1.74809 1.23881 0.92437 1.00744 0.86363 0.80545 1.23180 1.03239 0.85672 1.04908 1.24483 0.91731 0.95809 0.93498 1.18920 1.03688 0.88773 1.00028 1.22018 0.95245 0.92487 0.98126 1.22458 1.00086 0.98066 0.98070 1.23582 0.90333 0.98877 0.91374 1.67845 1.23153 0.99603 1.30659 1.23313 0.92484 0.95731 0.90612 1.78398 1.15874 0.93779 1.17746 1.91298 1.86055 1.11245 1.32528 1.23025 0.97208 0.96189 1.04288 1.22438 0.93911 1.01594 1.02357 0.93356 0.95498 0.94969 0.74688 0.85305 0.81842 0.84419 0.81075 0.79124 0.79742 0.89188 0.89043 0.91825 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.90 12.91 21.45 0.28 -50.63 16 2 C 0.02 1.15 5.39 84.65 0.46 1.61 16 3 Si 0.95 40.93 29.55 68.60 2.03 42.96 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.50 -24.20 8.63 25.60 0.22 -23.98 16 8 H 0.07 3.24 7.82 -2.91 -0.02 3.21 16 9 C 0.01 0.31 1.38 -52.93 -0.07 0.24 16 10 C 0.18 7.99 5.50 86.38 0.48 8.46 16 11 N -0.68 -24.15 5.32 -463.06 -2.47 -26.61 16 12 C 0.48 17.68 7.18 87.66 0.63 18.31 16 13 O -0.59 -28.32 16.59 15.01 0.25 -28.07 16 14 C 0.03 0.72 4.23 30.44 0.13 0.85 16 15 H 0.18 3.31 8.14 -2.39 -0.02 3.29 16 16 C -0.13 -2.23 5.83 30.75 0.18 -2.05 16 17 C 0.13 3.09 7.17 45.76 0.33 3.41 16 18 C -0.11 -2.12 5.89 -20.04 -0.12 -2.24 16 19 C -0.05 -0.90 9.82 22.73 0.22 -0.68 16 20 C -0.17 -2.00 10.10 22.32 0.23 -1.77 16 21 C 0.11 1.41 11.17 84.71 0.95 2.36 16 22 N -0.50 -8.53 10.35 -194.72 -2.01 -10.54 16 23 C 0.14 2.23 10.79 85.03 0.92 3.14 16 24 N -0.32 -9.68 12.19 -42.23 -0.51 -10.20 16 25 O -0.19 -6.54 11.82 -20.30 -0.24 -6.78 16 26 C -0.17 -6.24 9.96 30.62 0.30 -5.94 16 27 C -0.16 -7.27 9.42 30.62 0.29 -6.99 16 28 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 29 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.03 1.44 8.09 -2.39 -0.02 1.43 16 31 H 0.42 11.94 8.37 -92.71 -0.78 11.17 16 32 H 0.13 1.82 7.62 -2.39 -0.02 1.80 16 33 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.14 2.54 7.92 -2.91 -0.02 2.51 16 35 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 36 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.19 1.96 7.40 -2.91 -0.02 1.94 16 38 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -76.13 361.13 2.74 -73.40 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.29 Total: 21.72 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.13 Total: -5.25 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -4.72 Total: -97.98 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: 0.01 Total: -34.84 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -76.13 2.74 -73.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.990 kcal (2) G-P(sol) polarization free energy of solvation -76.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds