Wall clock time and date at job start Tue Mar 31 2020 10:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99458 * 2 1 4 4 H 1.48499 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47067 * 299.99891 * 3 2 1 6 6 H 1.48496 * 109.47242 * 59.99903 * 3 2 1 7 7 C 1.37876 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99532 * 172.92632 * 7 2 1 9 9 C 1.50692 * 119.99952 * 352.92395 * 7 2 1 10 10 C 1.53007 * 115.54647 * 84.53333 * 9 7 2 11 11 N 1.46497 * 109.47134 * 39.67809 * 10 9 7 12 12 C 1.34776 * 119.99624 * 181.16377 * 11 10 9 13 13 O 1.21279 * 120.00465 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99720 * 180.02562 * 12 11 10 15 15 H 1.09002 * 110.89240 * 58.82073 * 14 12 11 16 16 C 1.54736 * 110.97317 * 295.00267 * 14 12 11 17 17 C 1.51696 * 102.55010 * 217.66496 * 16 14 12 18 18 C 1.47646 * 125.86350 * 195.38869 * 17 16 14 19 19 C 1.40045 * 120.56015 * 179.97438 * 18 17 16 20 20 C 1.38350 * 118.28439 * 179.97438 * 19 18 17 21 21 C 1.38346 * 119.31081 * 0.02562 * 20 19 18 22 22 N 1.31915 * 121.09128 * 0.02562 * 21 20 19 23 23 C 1.31698 * 121.88254 * 359.68144 * 22 21 20 24 24 N 1.29075 * 108.26890 * 15.38887 * 17 16 14 25 25 O 1.41396 * 112.87299 * 0.31987 * 24 17 16 26 26 C 1.52993 * 117.52074 * 230.23128 * 9 7 2 27 27 C 1.52997 * 60.00087 * 107.48378 * 26 9 7 28 28 H 0.96997 * 120.00566 * 5.03141 * 1 2 3 29 29 H 1.08999 * 109.46880 * 279.67659 * 10 9 7 30 30 H 1.09000 * 109.47022 * 159.67734 * 10 9 7 31 31 H 0.96999 * 120.00114 * 1.16723 * 11 10 9 32 32 H 1.09004 * 110.79413 * 335.92844 * 16 14 12 33 33 H 1.09000 * 110.79805 * 99.39777 * 16 14 12 34 34 H 1.07995 * 120.85729 * 359.96412 * 19 18 17 35 35 H 1.08002 * 120.34629 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.45795 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.72106 * 180.31301 * 23 22 21 38 38 H 1.09004 * 117.50200 * 214.97283 * 26 9 7 39 39 H 1.08998 * 117.49744 * 359.97438 * 26 9 7 40 40 H 1.08997 * 117.50150 * 252.50909 * 27 26 9 41 41 H 1.09002 * 117.51760 * 107.48288 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0785 -1.1975 -0.1146 9 6 1.2599 -2.4940 0.1619 10 6 0.6737 -3.0825 -1.1231 11 7 1.6227 -2.8951 -2.2233 12 6 1.3077 -3.3169 -3.4640 13 8 0.2385 -3.8511 -3.6698 14 6 2.2841 -3.1246 -4.5957 15 1 3.2300 -3.6223 -4.3818 16 6 2.5033 -1.6211 -4.8887 17 6 2.6161 -1.5931 -6.4012 18 6 3.1428 -0.4748 -7.2087 19 6 3.1969 -0.5685 -8.6050 20 6 3.6986 0.5076 -9.3153 21 6 4.1271 1.6307 -8.6304 22 7 4.0652 1.6907 -7.3140 23 6 3.5908 0.6953 -6.5939 24 7 2.1726 -2.7147 -6.8609 25 8 1.7273 -3.5885 -5.8423 26 6 1.7705 -3.4748 1.2192 27 6 0.4723 -2.7010 1.4571 28 1 -0.4851 0.8367 -0.0737 29 1 -0.2622 -2.5767 -1.3604 30 1 0.4860 -4.1470 -0.9826 31 1 2.4777 -2.4676 -2.0588 32 1 1.6490 -1.0330 -4.5534 33 1 3.4241 -1.2667 -4.4254 34 1 2.8560 -1.4578 -9.1141 35 1 3.7552 0.4713 -10.3932 36 1 4.5188 2.4722 -9.1825 37 1 3.5515 0.7838 -5.5183 38 1 1.6889 -4.5394 0.9995 39 1 2.6458 -3.1800 1.7981 40 1 0.4932 -1.8970 2.1928 41 1 -0.4637 -3.2561 1.3939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797563139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:28 Heat of formation + Delta-G solvation = 27.159846 kcal Electronic energy + Delta-G solvation = -25448.906423 eV Core-core repulsion = 21716.935577 eV Total energy + Delta-G solvation = -3731.970846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90263 -40.98009 -39.94787 -38.41709 -35.31327 -35.03463 -33.98503 -33.26870 -32.15653 -31.57614 -28.24803 -27.31654 -25.58899 -25.17708 -24.09163 -22.93372 -21.58561 -21.42177 -20.98812 -18.79823 -18.48481 -18.01623 -17.59003 -17.41690 -16.77666 -16.66500 -16.49321 -16.18239 -15.83435 -15.45605 -15.09902 -14.82103 -14.57044 -14.42614 -14.26479 -14.11645 -13.97789 -13.76152 -13.48559 -13.03901 -12.94034 -12.89886 -12.81103 -12.27013 -12.01255 -11.97204 -11.66047 -11.46840 -10.98497 -10.80585 -10.65317 -10.57449 -10.45540 -10.16914 -9.86655 -9.78113 -8.07606 -6.22174 -0.56859 0.20693 1.03760 1.43062 1.44824 1.51058 1.52393 1.59350 2.35121 2.45443 2.76872 2.79274 3.19536 3.21402 3.27435 3.46018 3.53971 3.70465 3.79903 3.87674 3.93892 4.12132 4.23010 4.26100 4.42090 4.50703 4.53118 4.67195 4.69011 4.72847 4.76138 5.01270 5.03263 5.04534 5.11726 5.27058 5.43211 5.60137 5.60814 5.65930 5.79220 6.06265 6.38591 6.66717 6.87465 6.87801 7.24703 7.49141 8.99932 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003965 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.554117 B = 7060.449945 C = 8861.117011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.033 3.967 3 Si 0.944 3.056 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.295 1.295 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.007 3.993 10 C 0.176 3.824 11 N -0.676 5.676 12 C 0.507 3.493 13 O -0.585 6.585 14 C 0.033 3.967 15 H 0.148 0.852 16 C -0.139 4.139 17 C 0.149 3.851 18 C -0.109 4.109 19 C -0.044 4.044 20 C -0.164 4.164 21 C 0.115 3.885 22 N -0.508 5.508 23 C 0.134 3.866 24 N -0.308 5.308 25 O -0.201 6.201 26 C -0.180 4.180 27 C -0.165 4.165 28 H 0.258 0.742 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.417 0.583 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.177 0.823 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.147 2.444 -15.101 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.168 4.168 3 Si 0.770 3.230 4 H -0.177 1.177 5 H -0.209 1.209 6 H -0.221 1.221 7 C -0.541 4.541 8 H 0.091 0.909 9 C 0.006 3.994 10 C 0.052 3.948 11 N -0.328 5.328 12 C 0.292 3.708 13 O -0.466 6.466 14 C -0.028 4.028 15 H 0.165 0.835 16 C -0.178 4.178 17 C -0.041 4.041 18 C -0.113 4.113 19 C -0.071 4.071 20 C -0.184 4.184 21 C -0.041 4.041 22 N -0.217 5.217 23 C -0.025 4.025 24 N -0.050 5.050 25 O -0.218 6.218 26 C -0.217 4.217 27 C -0.203 4.203 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.255 0.745 32 H 0.121 0.879 33 H 0.174 0.826 34 H 0.164 0.836 35 H 0.194 0.806 36 H 0.209 0.791 37 H 0.192 0.808 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.178 2.091 -15.607 19.311 hybrid contribution -0.286 0.561 0.864 1.070 sum 10.891 2.652 -14.743 18.520 Atomic orbital electron populations 1.70125 1.07538 1.27249 1.49334 1.25657 0.95170 1.01877 0.94109 0.85728 0.79977 0.80210 0.77097 1.17743 1.20905 1.22150 1.20627 0.93438 0.88920 1.51126 0.90902 1.19107 0.99281 0.94816 0.86156 1.20608 0.90966 0.96621 0.86588 1.45715 1.21794 1.58650 1.06594 1.20487 0.87242 0.78802 0.84299 1.90684 1.26242 1.45503 1.84162 1.23629 0.97587 0.96249 0.85374 0.83518 1.23084 1.08118 0.94804 0.91808 1.24312 0.93119 0.91955 0.94676 1.18850 1.05410 0.93201 0.93808 1.22036 0.93179 0.99777 0.92158 1.22490 0.99268 0.93115 1.03482 1.23621 0.92646 0.98236 0.89638 1.67835 1.15296 1.29200 1.09322 1.23226 0.91003 0.86854 1.01459 1.78416 1.11740 1.02547 1.12291 1.91346 1.71218 1.46025 1.13247 1.23094 0.97214 0.96268 1.05083 1.22437 0.93997 1.01547 1.02312 0.93328 0.95225 0.93959 0.74483 0.87945 0.82556 0.83556 0.80608 0.79100 0.80837 0.89432 0.89422 0.91808 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.40 12.97 21.45 0.28 -48.12 16 2 C 0.03 1.63 5.39 84.65 0.46 2.08 16 3 Si 0.94 38.46 29.55 68.60 2.03 40.49 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.50 -23.13 7.44 25.60 0.19 -22.94 16 8 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.01 0.31 1.70 -52.93 -0.09 0.22 16 10 C 0.18 7.71 5.75 86.38 0.50 8.21 16 11 N -0.68 -25.10 5.32 -463.06 -2.47 -27.56 16 12 C 0.51 19.33 7.14 87.66 0.63 19.96 16 13 O -0.59 -28.20 16.59 15.00 0.25 -27.95 16 14 C 0.03 0.97 4.23 30.44 0.13 1.10 16 15 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 16 C -0.14 -3.29 5.82 30.76 0.18 -3.11 16 17 C 0.15 3.63 7.17 45.77 0.33 3.96 16 18 C -0.11 -2.17 5.89 -20.03 -0.12 -2.29 16 19 C -0.04 -0.73 9.82 22.74 0.22 -0.50 16 20 C -0.16 -1.83 10.10 22.32 0.23 -1.61 16 21 C 0.12 1.48 11.17 84.71 0.95 2.43 16 22 N -0.51 -9.67 10.35 -194.72 -2.01 -11.68 16 23 C 0.13 2.54 10.79 85.03 0.92 3.46 16 24 N -0.31 -9.31 12.19 -42.23 -0.51 -9.82 16 25 O -0.20 -7.21 11.82 -20.31 -0.24 -7.45 16 26 C -0.18 -6.81 9.88 30.59 0.30 -6.51 16 27 C -0.16 -7.22 9.51 30.59 0.29 -6.93 16 28 H 0.26 13.42 8.32 -92.71 -0.77 12.65 16 29 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.80 7.95 -2.39 -0.02 1.78 16 31 H 0.42 13.49 7.46 -92.71 -0.69 12.80 16 32 H 0.10 2.79 7.90 -2.39 -0.02 2.77 16 33 H 0.16 2.41 7.98 -2.39 -0.02 2.39 16 34 H 0.15 2.31 7.92 -2.91 -0.02 2.29 16 35 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.17 2.80 7.40 -2.91 -0.02 2.78 16 38 H 0.09 2.96 8.08 -2.38 -0.02 2.94 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -69.81 359.56 2.79 -67.02 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.37 Total: 27.56 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.10 Total: -2.47 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -4.72 Total: -97.19 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: 0.01 Total: -35.41 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -69.81 2.79 -67.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.179 kcal (2) G-P(sol) polarization free energy of solvation -69.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds