Wall clock time and date at job start Tue Mar 31 2020 10:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00215 * 2 1 4 4 H 1.48504 * 109.47414 * 270.00526 * 3 2 1 5 5 H 1.48506 * 109.47055 * 30.00773 * 3 2 1 6 6 H 1.48508 * 109.47143 * 150.00278 * 3 2 1 7 7 C 1.37881 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99840 * 181.96649 * 7 2 1 9 9 C 1.50699 * 120.00101 * 1.95496 * 7 2 1 10 10 C 1.53006 * 115.54774 * 84.64626 * 9 7 2 11 11 N 1.46494 * 109.47270 * 57.83574 * 10 9 7 12 12 C 1.34775 * 119.99925 * 185.19569 * 11 10 9 13 13 O 1.21693 * 120.00144 * 5.57470 * 12 11 10 14 14 C 1.46658 * 119.99890 * 185.57250 * 12 11 10 15 15 C 1.36548 * 125.99030 * 174.64760 * 14 12 11 16 16 C 1.40362 * 106.71045 * 180.02562 * 15 14 12 17 17 C 1.35131 * 107.11622 * 0.22496 * 16 15 14 18 18 C 1.50694 * 125.61956 * 179.74019 * 17 16 15 19 19 N 1.46494 * 109.47240 * 89.99902 * 18 17 16 20 20 C 1.34951 * 126.03883 * 124.71695 * 19 18 17 21 21 C 1.35315 * 107.74875 * 179.83970 * 20 19 18 22 22 C 1.39870 * 107.91990 * 0.42486 * 21 20 19 23 23 N 1.30845 * 108.19971 * 359.73682 * 22 21 20 24 24 O 1.33940 * 108.76454 * 359.63018 * 17 16 15 25 25 C 1.52998 * 117.50251 * 230.31211 * 9 7 2 26 26 C 1.53000 * 117.50001 * 298.97441 * 9 7 2 27 27 H 0.97003 * 119.99894 * 5.01356 * 1 2 3 28 28 H 1.09005 * 109.46866 * 297.84119 * 10 9 7 29 29 H 1.08996 * 109.47298 * 177.84295 * 10 9 7 30 30 H 0.97004 * 120.00086 * 5.20342 * 11 10 9 31 31 H 1.08000 * 126.64088 * 0.02562 * 15 14 12 32 32 H 1.08002 * 126.44207 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.47331 * 210.00538 * 18 17 16 34 34 H 1.09001 * 109.46980 * 330.00045 * 18 17 16 35 35 H 1.08002 * 126.12221 * 0.02562 * 20 19 18 36 36 H 1.07998 * 126.04154 * 180.16401 * 21 20 19 37 37 H 1.07993 * 125.90183 * 179.75721 * 22 21 20 38 38 H 1.09003 * 117.50163 * 215.00728 * 25 9 7 39 39 H 1.09004 * 117.49604 * 0.02562 * 25 9 7 40 40 H 1.08991 * 117.50173 * 359.97313 * 26 9 7 41 41 H 1.09003 * 117.49621 * 144.97515 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0840 -1.1944 0.0316 9 6 1.2516 -2.4988 -0.0456 10 6 0.8511 -2.9816 -1.4412 11 7 2.0494 -3.1214 -2.2722 12 6 1.9313 -3.4352 -3.5776 13 8 0.8295 -3.5028 -4.0899 14 6 3.1306 -3.6952 -4.3806 15 6 3.1509 -4.1206 -5.6780 16 6 4.5011 -4.2373 -6.0433 17 6 5.2366 -3.8873 -4.9651 18 6 6.7419 -3.8696 -4.8977 19 7 7.2335 -2.5509 -5.3045 20 6 8.0432 -1.7481 -4.5828 21 6 8.2657 -0.6274 -5.3078 22 6 7.5602 -0.7453 -6.5098 23 7 6.9411 -1.8979 -6.5089 24 8 4.4072 -3.5565 -3.9668 25 6 1.6181 -3.5622 0.9915 26 6 0.2944 -2.8024 1.1087 27 1 -0.4850 0.8369 -0.0734 28 1 0.1758 -2.2570 -1.8964 29 1 0.3493 -3.9459 -1.3619 30 1 2.9278 -2.9882 -1.8829 31 1 2.2940 -4.3272 -6.3020 32 1 4.8809 -4.5519 -7.0042 33 1 7.0625 -4.0779 -3.8769 34 1 7.1446 -4.6298 -5.5671 35 1 8.4444 -1.9630 -3.6034 36 1 8.8764 0.2118 -5.0092 37 1 7.5317 -0.0118 -7.3019 38 1 1.5739 -4.6057 0.6797 39 1 2.4035 -3.3180 1.7068 40 1 0.2096 -2.0587 1.9010 41 1 -0.6209 -3.3457 0.8739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:34 Heat of formation + Delta-G solvation = 86.926419 kcal Electronic energy + Delta-G solvation = -25363.960406 eV Core-core repulsion = 21634.581233 eV Total energy + Delta-G solvation = -3729.379173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.72696 -41.19223 -38.95434 -36.73644 -34.41070 -33.55275 -32.86925 -32.00193 -30.57068 -29.78608 -27.35111 -25.94190 -25.12096 -22.32908 -21.85534 -21.22727 -21.17553 -20.77073 -19.89878 -19.48115 -18.00815 -17.53629 -16.37584 -16.15291 -15.90581 -15.19717 -15.08126 -14.73052 -14.44220 -14.17660 -14.06841 -13.74737 -13.37641 -13.22737 -12.97943 -12.95430 -12.89729 -12.70037 -12.12704 -11.95432 -11.62265 -11.01624 -10.95536 -10.82360 -10.56518 -10.30468 -10.02662 -9.96204 -9.64659 -9.52534 -9.10575 -8.85338 -8.68777 -8.51447 -8.37692 -8.11426 -6.11421 -4.20778 1.00667 1.70102 2.08322 2.58011 2.66251 2.72934 3.25208 3.32706 3.33561 3.53692 3.66563 4.29898 4.32938 4.35149 4.65442 4.79777 4.88865 4.93453 5.11200 5.18482 5.32280 5.39260 5.59949 5.62875 5.74756 5.85236 5.85878 5.97540 6.26120 6.31999 6.40651 6.44177 6.47303 6.64870 6.75375 6.76641 6.84012 7.06245 7.13345 7.33213 7.47065 7.53227 7.77682 8.10808 8.28334 8.60555 8.80570 9.47153 10.96726 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003975 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.172567 B = 7041.457850 C = 8466.366081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.684 5.684 12 C 0.587 3.413 13 O -0.532 6.532 14 C -0.041 4.041 15 C -0.140 4.140 16 C -0.171 4.171 17 C -0.029 4.029 18 C 0.220 3.780 19 N -0.376 5.376 20 C 0.058 3.942 21 C -0.273 4.273 22 C 0.045 3.955 23 N -0.287 5.287 24 O -0.155 6.155 25 C -0.212 4.212 26 C -0.142 4.142 27 H 0.262 0.738 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.406 0.594 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.176 0.824 36 H 0.148 0.852 37 H 0.183 0.817 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.644 -7.439 -9.204 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.023 3.977 10 C 0.037 3.963 11 N -0.331 5.331 12 C 0.371 3.629 13 O -0.412 6.412 14 C -0.094 4.094 15 C -0.160 4.160 16 C -0.191 4.191 17 C -0.082 4.082 18 C 0.099 3.901 19 N -0.160 5.160 20 C -0.087 4.087 21 C -0.302 4.302 22 C -0.142 4.142 23 N -0.108 5.108 24 O -0.050 6.050 25 C -0.249 4.249 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.241 0.759 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.193 0.807 36 H 0.166 0.834 37 H 0.200 0.800 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.947 -8.190 -9.726 18.873 hybrid contribution 1.262 1.675 0.490 2.154 sum 15.209 -6.515 -9.236 18.949 Atomic orbital electron populations 1.69982 1.05838 1.27025 1.48113 1.24967 0.94827 0.98949 0.94181 0.86656 0.79933 0.83615 0.78258 1.20581 1.21099 1.19792 1.20322 0.92263 0.88519 1.52641 0.92252 1.19025 0.99443 0.93587 0.85692 1.21103 0.85255 0.98483 0.91417 1.45900 1.12222 1.66843 1.08164 1.16615 0.85481 0.78700 0.82077 1.90850 1.24525 1.54188 1.71625 1.22555 0.82244 1.08510 0.96088 1.21922 0.97983 1.01907 0.94210 1.21546 0.92544 1.05634 0.99408 1.22355 0.92335 1.05475 0.87999 1.19943 0.85107 0.81860 1.03224 1.48733 1.37911 1.15458 1.13890 1.22646 0.95612 0.91993 0.98491 1.21546 1.10717 1.01044 0.96888 1.23941 0.96030 0.95424 0.98756 1.77406 1.22784 1.08683 1.01913 1.84034 1.15539 1.66704 1.38718 1.23059 1.00189 0.95562 1.06072 1.22471 0.91130 1.01291 1.03102 0.92807 0.90536 0.94087 0.75909 0.82140 0.82662 0.86544 0.86388 0.80714 0.83441 0.80043 0.91633 0.90314 0.89504 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.29 12.73 55.43 0.71 -23.59 16 2 C 0.08 2.00 5.43 -17.82 -0.10 1.91 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.50 -12.88 8.38 -34.44 -0.29 -13.17 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.02 0.54 1.51 -155.66 -0.23 0.31 16 10 C 0.16 3.61 5.57 -4.04 -0.02 3.59 16 11 N -0.68 -13.93 5.37 -61.63 -0.33 -14.26 16 12 C 0.59 11.83 7.78 -12.86 -0.10 11.73 16 13 O -0.53 -12.14 16.85 5.20 0.09 -12.06 16 14 C -0.04 -0.69 7.13 -36.79 -0.26 -0.95 16 15 C -0.14 -2.07 10.63 -39.39 -0.42 -2.49 16 16 C -0.17 -2.13 10.77 -39.89 -0.43 -2.56 16 17 C -0.03 -0.36 6.75 -35.42 -0.24 -0.60 16 18 C 0.22 1.89 7.04 -5.20 -0.04 1.85 16 19 N -0.38 -4.15 3.67 -62.55 -0.23 -4.38 16 20 C 0.06 0.55 11.45 -17.22 -0.20 0.36 16 21 C -0.27 -2.72 10.80 -40.01 -0.43 -3.15 16 22 C 0.05 0.50 12.03 -17.36 -0.21 0.29 16 23 N -0.29 -3.73 12.41 30.62 0.38 -3.35 16 24 O -0.15 -2.39 10.41 4.97 0.05 -2.34 16 25 C -0.21 -4.34 9.94 -26.69 -0.27 -4.60 16 26 C -0.14 -3.20 9.26 -26.69 -0.25 -3.45 16 27 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 28 H 0.08 1.97 8.09 -51.93 -0.42 1.55 16 29 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.41 7.82 8.01 -40.82 -0.33 7.49 16 31 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 33 H 0.12 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -32.56 366.14 -7.68 -40.24 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.36 Total: 9.33 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.48 Total: -10.95 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.52 Total: -45.58 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.14 Total: -14.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.56 -7.68 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.167 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds