Wall clock time and date at job start Tue Mar 31 2020 10:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00205 * 2 1 4 4 H 1.48499 * 109.47140 * 240.00094 * 3 2 1 5 5 H 1.48495 * 109.47526 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46927 * 120.00206 * 3 2 1 7 7 C 1.37885 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99740 * 172.08808 * 7 2 1 9 9 C 1.50697 * 119.99864 * 352.09058 * 7 2 1 10 10 C 1.52998 * 115.55098 * 294.74630 * 9 7 2 11 11 N 1.46504 * 109.46986 * 280.33323 * 10 9 7 12 12 C 1.33790 * 124.17826 * 266.98484 * 11 10 9 13 13 O 1.21544 * 123.77277 * 0.03443 * 12 11 10 14 14 N 1.34525 * 112.46050 * 180.02562 * 12 11 10 15 15 C 1.47313 * 106.61635 * 359.76435 * 14 12 11 16 16 H 1.09002 * 110.70213 * 241.76849 * 15 14 12 17 17 C 1.53003 * 110.49767 * 118.82449 * 15 14 12 18 18 C 1.50703 * 109.47131 * 70.88516 * 17 15 14 19 19 C 1.38649 * 120.78769 * 269.71845 * 18 17 15 20 20 C 1.38206 * 119.15772 * 179.75265 * 19 18 17 21 21 N 1.31872 * 120.76659 * 0.53803 * 20 19 18 22 22 C 1.31869 * 121.72179 * 359.73524 * 21 20 19 23 23 C 1.38199 * 120.76682 * 359.97438 * 22 21 20 24 24 C 1.34766 * 124.17828 * 87.02061 * 11 10 9 25 25 O 1.21237 * 127.15756 * 359.92974 * 24 11 10 26 26 C 1.53005 * 117.51958 * 80.44772 * 9 7 2 27 27 C 1.52997 * 60.00097 * 107.47981 * 26 9 7 28 28 H 0.97008 * 119.99449 * 5.04798 * 1 2 3 29 29 H 1.08996 * 109.46971 * 160.33598 * 10 9 7 30 30 H 1.08998 * 109.47435 * 40.33184 * 10 9 7 31 31 H 0.97001 * 126.69597 * 179.97438 * 14 12 11 32 32 H 1.08998 * 109.47036 * 190.88773 * 17 15 14 33 33 H 1.08999 * 109.46663 * 310.88671 * 17 15 14 34 34 H 1.08005 * 120.42198 * 0.02562 * 19 18 17 35 35 H 1.08002 * 119.61672 * 180.29458 * 20 19 18 36 36 H 1.08001 * 119.61449 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.41674 * 180.02562 * 23 22 21 38 38 H 1.08996 * 117.49572 * 214.97112 * 26 9 7 39 39 H 1.09003 * 117.49487 * 359.97438 * 26 9 7 40 40 H 1.09008 * 117.49679 * 252.51600 * 27 26 9 41 41 H 1.08994 * 117.50005 * 107.48687 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0768 -1.1986 -0.1293 9 6 1.2617 -2.4931 0.1785 10 6 0.5878 -2.6858 1.5385 11 7 1.5873 -3.1067 2.5234 12 6 1.8587 -4.3827 2.8206 13 8 1.3022 -5.3304 2.3017 14 7 2.8166 -4.4994 3.7580 15 6 3.2262 -3.1301 4.1146 16 1 4.2786 -2.9694 3.8807 17 6 2.9550 -2.8584 5.5957 18 6 3.9251 -3.6472 6.4370 19 6 3.6140 -4.9287 6.8653 20 6 4.5308 -5.6238 7.6311 21 7 5.6843 -5.0778 7.9633 22 6 6.0111 -3.8596 7.5784 23 6 5.1474 -3.1066 6.8059 24 6 2.3464 -2.2565 3.2425 25 8 2.3324 -1.0451 3.1973 26 6 0.5596 -3.0807 -1.0474 27 6 1.8337 -3.7346 -0.5088 28 1 -0.4850 0.8369 -0.0739 29 1 -0.1851 -3.4499 1.4559 30 1 0.1370 -1.7460 1.8571 31 1 3.1709 -5.3245 4.1250 32 1 3.0795 -1.7947 5.7987 33 1 1.9357 -3.1579 5.8393 34 1 2.6692 -5.3798 6.6000 35 1 4.2982 -6.6243 7.9646 36 1 6.9649 -3.4455 7.8705 37 1 5.4210 -2.1097 6.4935 38 1 -0.3823 -3.6046 -0.8850 39 1 0.6347 -2.5275 -1.9837 40 1 2.7472 -3.6117 -1.0908 41 1 1.7300 -4.6886 0.0079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804194806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:09 Heat of formation + Delta-G solvation = 19.728083 kcal Electronic energy + Delta-G solvation = -26451.502101 eV Core-core repulsion = 22719.208990 eV Total energy + Delta-G solvation = -3732.293111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00203 -40.36687 -38.01240 -36.90445 -35.94549 -34.59525 -33.02558 -31.97495 -31.48855 -29.57077 -27.18765 -25.51700 -24.87583 -23.75175 -22.51789 -21.54372 -21.18388 -20.52783 -18.95988 -17.64665 -17.16350 -16.68494 -16.41070 -16.28698 -15.83621 -15.67764 -15.00404 -14.70739 -14.55395 -14.32788 -14.11529 -13.89167 -13.69329 -13.54950 -13.20758 -12.82314 -12.69956 -12.35127 -11.75785 -11.63054 -11.38411 -10.98564 -10.82692 -10.57210 -10.47480 -10.13495 -10.08743 -9.99007 -9.79378 -9.56148 -9.44500 -9.29173 -8.93560 -8.78458 -8.47074 -8.15542 -6.03600 -4.07467 0.84022 0.90360 2.14885 2.70605 3.34254 3.38309 3.39885 3.45213 3.51062 3.57880 4.11011 4.19547 4.42185 4.44686 4.52779 4.66831 4.81618 4.85122 4.89983 5.19667 5.28858 5.32760 5.42372 5.51514 5.56860 5.69255 5.72645 6.03734 6.09048 6.20095 6.34438 6.40783 6.40928 6.64207 6.77665 6.94054 6.99033 7.05568 7.30492 7.46611 7.68021 7.68660 7.89139 7.98814 8.39865 8.56452 8.89217 9.58127 11.04854 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017597 B = 0.004096 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.842901 B = 6834.327607 C = 7950.434365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.082 3.918 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.489 4.489 8 H 0.055 0.945 9 C 0.030 3.970 10 C 0.160 3.840 11 N -0.556 5.556 12 C 0.702 3.298 13 O -0.550 6.550 14 N -0.733 5.733 15 C 0.097 3.903 16 H 0.122 0.878 17 C -0.083 4.083 18 C -0.036 4.036 19 C -0.170 4.170 20 C 0.100 3.900 21 N -0.489 5.489 22 C 0.100 3.900 23 C -0.166 4.166 24 C 0.524 3.476 25 O -0.439 6.439 26 C -0.161 4.161 27 C -0.208 4.208 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.431 0.569 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 -7.407 14.676 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.122 4.122 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.029 3.971 10 C 0.040 3.960 11 N -0.300 5.300 12 C 0.403 3.597 13 O -0.424 6.424 14 N -0.398 5.398 15 C -0.012 4.012 16 H 0.139 0.861 17 C -0.122 4.122 18 C -0.044 4.044 19 C -0.190 4.190 20 C -0.057 4.057 21 N -0.199 5.199 22 C -0.057 4.057 23 C -0.186 4.186 24 C 0.308 3.692 25 O -0.306 6.306 26 C -0.200 4.200 27 C -0.245 4.245 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.274 0.726 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.147 -7.491 14.859 18.110 hybrid contribution 0.085 1.000 -0.516 1.129 sum 7.232 -6.491 14.343 17.325 Atomic orbital electron populations 1.69924 1.05921 1.27015 1.48944 1.24852 0.94698 0.98778 0.93851 0.86703 0.79888 0.83111 0.78668 1.20589 1.21344 1.19638 1.20265 0.92896 0.88629 1.50875 0.92731 1.19127 0.98075 0.91825 0.88099 1.21483 0.86858 1.00293 0.87340 1.46436 1.38433 1.06396 1.38718 1.15970 0.80183 0.83729 0.79799 1.90951 1.55255 1.39765 1.56464 1.45565 1.42029 1.07942 1.44242 1.22038 1.01578 0.82780 0.94853 0.86091 1.20850 0.99082 1.01598 0.90641 1.20188 0.94683 0.94257 0.95246 1.22142 1.01605 0.95121 1.00095 1.22787 0.89073 0.99766 0.94064 1.67690 1.18692 1.12233 1.21249 1.22788 0.99227 0.89909 0.93748 1.22156 0.94524 1.01988 0.99958 1.20389 0.80649 0.87708 0.80448 1.90845 1.64719 1.10877 1.64113 1.22690 0.93471 1.03462 1.00361 1.22950 0.97443 0.97478 1.06616 0.92859 0.91518 0.87597 0.72577 0.87704 0.89101 0.84589 0.82722 0.82697 0.84317 0.91655 0.90041 0.90889 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.38 12.54 55.43 0.69 -23.68 16 2 C 0.08 2.21 5.26 -17.82 -0.09 2.12 16 3 Si 0.89 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.49 -13.13 8.82 -34.44 -0.30 -13.43 16 8 H 0.05 1.50 7.83 -52.49 -0.41 1.09 16 9 C 0.03 0.73 1.48 -155.66 -0.23 0.50 16 10 C 0.16 3.59 5.51 -4.04 -0.02 3.57 16 11 N -0.56 -10.69 2.57 -120.73 -0.31 -11.00 16 12 C 0.70 12.22 8.47 -88.02 -0.75 11.47 16 13 O -0.55 -11.13 16.23 5.33 0.09 -11.04 16 14 N -0.73 -9.13 6.07 -59.19 -0.36 -9.48 16 15 C 0.10 1.18 3.64 -68.20 -0.25 0.93 16 16 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.08 -0.78 5.14 -27.88 -0.14 -0.93 16 18 C -0.04 -0.30 5.07 -104.32 -0.53 -0.83 16 19 C -0.17 -1.34 9.34 -39.44 -0.37 -1.71 16 20 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 21 N -0.49 -4.88 10.36 -13.25 -0.14 -5.01 16 22 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 23 C -0.17 -1.34 9.82 -39.44 -0.39 -1.72 16 24 C 0.52 9.34 7.65 -10.56 -0.08 9.26 16 25 O -0.44 -9.38 17.79 5.59 0.10 -9.28 16 26 C -0.16 -3.77 9.88 -26.73 -0.26 -4.04 16 27 C -0.21 -4.68 9.88 -26.73 -0.26 -4.94 16 28 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 29 H 0.07 1.45 7.60 -51.93 -0.39 1.06 16 30 H 0.11 2.62 7.16 -51.93 -0.37 2.24 16 31 H 0.43 4.28 8.54 -40.82 -0.35 3.93 16 32 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.06 1.44 8.09 -51.93 -0.42 1.02 16 39 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.08 1.71 6.77 -51.93 -0.35 1.35 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -32.32 355.90 -8.89 -41.21 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.23 Total: 4.93 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -4.07 Total: 1.53 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.11 Total: -49.18 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.19 Total: -20.32 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.32 -8.89 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804194806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.941 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds