Wall clock time and date at job start Tue Mar 31 2020 10:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47088 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47043 * 299.99419 * 3 2 1 6 6 H 1.48504 * 109.46878 * 59.99693 * 3 2 1 7 7 C 1.37872 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00536 * 169.81795 * 7 2 1 9 9 C 1.50706 * 119.99795 * 349.81342 * 7 2 1 10 10 C 1.53004 * 115.55114 * 294.37583 * 9 7 2 11 11 N 1.46497 * 109.46620 * 269.54273 * 10 9 7 12 12 C 1.33789 * 124.17670 * 84.29929 * 11 10 9 13 13 O 1.21544 * 123.77119 * 0.02641 * 12 11 10 14 14 N 1.34524 * 112.46135 * 180.02562 * 12 11 10 15 15 C 1.47313 * 106.61957 * 0.02562 * 14 12 11 16 16 H 1.09001 * 110.60366 * 118.67301 * 15 14 12 17 17 C 1.52997 * 110.59757 * 241.47346 * 15 14 12 18 18 C 1.50697 * 109.47020 * 293.54192 * 17 15 14 19 19 C 1.38649 * 120.79164 * 90.00356 * 18 17 15 20 20 C 1.38206 * 119.16190 * 180.02562 * 19 18 17 21 21 N 1.31868 * 120.76282 * 0.25234 * 20 19 18 22 22 C 1.31866 * 121.72835 * 359.47599 * 21 20 19 23 23 C 1.38202 * 120.76429 * 0.52808 * 22 21 20 24 24 C 1.34769 * 124.18185 * 264.32968 * 11 10 9 25 25 O 1.21236 * 127.15304 * 0.02562 * 24 11 10 26 26 C 1.53002 * 117.51568 * 80.07622 * 9 7 2 27 27 C 1.52998 * 60.00066 * 107.48196 * 26 9 7 28 28 H 0.97007 * 120.00082 * 5.03210 * 1 2 3 29 29 H 1.09000 * 109.46906 * 149.54425 * 10 9 7 30 30 H 1.08996 * 109.46669 * 29.54421 * 10 9 7 31 31 H 0.96999 * 126.69308 * 179.97438 * 14 12 11 32 32 H 1.09003 * 109.46998 * 173.54214 * 17 15 14 33 33 H 1.08996 * 109.47342 * 53.54233 * 17 15 14 34 34 H 1.08002 * 120.41794 * 359.97438 * 19 18 17 35 35 H 1.08003 * 119.61661 * 179.97438 * 20 19 18 36 36 H 1.07999 * 119.61497 * 180.26955 * 22 21 20 37 37 H 1.08004 * 120.42136 * 179.72383 * 23 22 21 38 38 H 1.09000 * 117.49741 * 214.96913 * 26 9 7 39 39 H 1.08997 * 117.49958 * 359.97438 * 26 9 7 40 40 H 1.09000 * 117.49807 * 252.51328 * 27 26 9 41 41 H 1.08999 * 117.50348 * 107.48947 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0717 -1.2014 -0.1648 9 6 1.2688 -2.4887 0.2319 10 6 0.6497 -2.6569 1.6210 11 7 1.6166 -3.3038 2.5114 12 6 2.5758 -2.6528 3.1793 13 8 2.7456 -1.4508 3.1173 14 7 3.3312 -3.4770 3.9274 15 6 2.8009 -4.8361 3.7231 16 1 3.5609 -5.4825 3.2842 17 6 2.2961 -5.4211 5.0437 18 6 3.4602 -5.6314 5.9773 19 6 3.8613 -4.6301 6.8484 20 6 4.9336 -4.8590 7.6897 21 7 5.5752 -6.0109 7.6665 22 6 5.2184 -6.9872 6.8552 23 6 4.1559 -6.8308 5.9854 24 6 1.6502 -4.6282 2.7584 25 8 0.9142 -5.4769 2.3026 26 6 0.5181 -3.0970 -0.9544 27 6 1.8124 -3.7428 -0.4557 28 1 -0.4850 0.8369 -0.0737 29 1 -0.2458 -3.2738 1.5474 30 1 0.3849 -1.6784 2.0215 31 1 4.0797 -3.2257 4.4908 32 1 1.8053 -6.3757 4.8541 33 1 1.5855 -4.7312 5.4986 34 1 3.3429 -3.6828 6.8686 35 1 5.2526 -4.0839 8.3709 36 1 5.7654 -7.9183 6.8677 37 1 3.8711 -7.6326 5.3201 38 1 -0.4168 -3.6169 -0.7453 39 1 0.5559 -2.5605 -1.9025 40 1 2.7019 -3.6312 -1.0758 41 1 1.7291 -4.6875 0.0814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804194807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:11 Heat of formation + Delta-G solvation = 0.069350 kcal Electronic energy + Delta-G solvation = -26380.137769 eV Core-core repulsion = 22646.992191 eV Total energy + Delta-G solvation = -3733.145578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.37780 -41.01666 -39.54264 -38.63355 -37.32333 -35.82848 -34.14931 -33.99187 -32.06960 -30.49019 -28.88174 -27.41905 -26.07396 -24.36186 -23.73316 -23.04407 -22.50855 -21.94011 -20.76666 -19.03075 -18.43595 -17.91694 -17.50262 -17.19182 -17.11480 -16.61196 -16.54971 -16.27775 -16.17574 -15.59050 -15.37902 -15.09800 -15.02851 -14.66389 -14.46908 -14.03180 -13.71528 -13.58242 -13.29533 -13.09480 -13.00662 -12.82023 -12.44989 -12.28227 -12.15810 -11.90028 -11.71666 -11.24365 -10.92994 -10.75393 -10.62735 -10.42269 -10.37421 -10.25195 -10.10248 -10.02612 -8.12443 -6.17088 0.23852 0.26068 0.69875 1.31907 1.35912 1.41600 1.49977 2.15005 2.23980 2.42727 2.89397 2.95438 3.14806 3.47961 3.64608 3.67097 3.71344 3.83995 4.01673 4.13369 4.23156 4.28569 4.30407 4.49520 4.50218 4.56997 4.64099 4.74569 4.80814 4.86462 4.90276 4.97866 5.08679 5.10818 5.19065 5.42205 5.49746 5.56526 5.78654 5.83489 5.89237 6.24363 6.38781 6.45248 6.80460 7.09506 7.27425 7.47969 8.95825 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.003816 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.532843 B = 7335.201894 C = 8287.464462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.286 1.286 7 C -0.489 4.489 8 H 0.038 0.962 9 C 0.008 3.992 10 C 0.175 3.825 11 N -0.565 5.565 12 C 0.695 3.305 13 O -0.565 6.565 14 N -0.710 5.710 15 C 0.114 3.886 16 H 0.154 0.846 17 C -0.072 4.072 18 C -0.042 4.042 19 C -0.171 4.171 20 C 0.089 3.911 21 N -0.516 5.516 22 C 0.089 3.911 23 C -0.161 4.161 24 C 0.520 3.480 25 O -0.494 6.494 26 C -0.161 4.161 27 C -0.183 4.183 28 H 0.261 0.739 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.445 0.555 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 -15.120 14.220 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.212 1.212 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.007 3.993 10 C 0.053 3.947 11 N -0.309 5.309 12 C 0.395 3.605 13 O -0.439 6.439 14 N -0.377 5.377 15 C 0.006 3.994 16 H 0.171 0.829 17 C -0.110 4.110 18 C -0.050 4.050 19 C -0.191 4.191 20 C -0.067 4.067 21 N -0.226 5.226 22 C -0.068 4.068 23 C -0.181 4.181 24 C 0.309 3.691 25 O -0.366 6.366 26 C -0.199 4.199 27 C -0.220 4.220 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.291 0.709 32 H 0.140 0.860 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.186 0.814 36 H 0.193 0.807 37 H 0.180 0.820 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.906 -14.875 14.499 21.890 hybrid contribution -0.157 1.638 -0.659 1.773 sum 6.750 -13.237 13.840 20.305 Atomic orbital electron populations 1.70023 1.06578 1.27236 1.50244 1.25393 0.95420 1.01163 0.94298 0.85796 0.79146 0.81080 0.77303 1.20277 1.20230 1.21212 1.20443 0.92797 0.90402 1.49014 0.94388 1.19199 0.99264 0.91630 0.89200 1.21035 0.88065 0.96526 0.89036 1.46509 1.31621 1.10042 1.42760 1.16079 0.79990 0.85235 0.79188 1.91027 1.72051 1.13498 1.67357 1.45456 1.35823 1.06397 1.49993 1.22106 0.95030 0.86215 0.96097 0.82923 1.20776 0.95739 1.04191 0.90288 1.20116 0.95540 0.94087 0.95297 1.22277 0.98919 1.00640 0.97243 1.23071 0.91957 0.94644 0.97071 1.67698 1.30240 1.01968 1.22650 1.23205 0.94600 0.98017 0.90936 1.22379 0.96562 0.98394 1.00716 1.21267 0.85214 0.81410 0.81231 1.90757 1.44902 1.47319 1.53669 1.22672 0.93971 1.03465 0.99780 1.22824 0.97358 0.96526 1.05319 0.92966 0.90619 0.91297 0.70878 0.85977 0.89372 0.83924 0.81416 0.80732 0.81962 0.90336 0.91368 0.90605 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.52 12.88 21.44 0.28 -51.24 16 2 C 0.04 2.13 5.16 84.65 0.44 2.57 16 3 Si 0.94 46.15 29.55 68.60 2.03 48.18 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 7 C -0.49 -27.32 8.77 25.60 0.22 -27.09 16 8 H 0.04 2.21 7.84 -2.91 -0.02 2.19 16 9 C 0.01 0.40 1.54 -52.92 -0.08 0.32 16 10 C 0.17 7.90 5.57 86.38 0.48 8.39 16 11 N -0.57 -21.04 2.42 -773.12 -1.87 -22.91 16 12 C 0.69 25.50 8.62 179.44 1.55 27.05 16 13 O -0.57 -26.71 17.54 -3.85 -0.07 -26.78 16 14 N -0.71 -16.79 5.92 -459.61 -2.72 -19.51 16 15 C 0.11 2.19 3.67 44.37 0.16 2.35 16 16 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 17 C -0.07 -0.97 5.16 29.85 0.15 -0.82 16 18 C -0.04 -0.53 5.01 -19.67 -0.10 -0.63 16 19 C -0.17 -2.33 9.07 22.36 0.20 -2.13 16 20 C 0.09 1.34 11.18 84.68 0.95 2.29 16 21 N -0.52 -9.12 10.36 -195.84 -2.03 -11.15 16 22 C 0.09 1.18 11.18 84.68 0.95 2.12 16 23 C -0.16 -1.76 9.82 22.36 0.22 -1.54 16 24 C 0.52 15.43 6.84 87.94 0.60 16.03 16 25 O -0.49 -16.35 16.95 -2.89 -0.05 -16.40 16 26 C -0.16 -7.38 9.88 30.59 0.30 -7.08 16 27 C -0.18 -7.85 9.66 30.59 0.30 -7.55 16 28 H 0.26 14.27 8.32 -92.70 -0.77 13.49 16 29 H 0.08 3.25 7.63 -2.39 -0.02 3.24 16 30 H 0.07 3.59 7.31 -2.39 -0.02 3.57 16 31 H 0.44 8.50 8.35 -92.71 -0.77 7.73 16 32 H 0.12 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.08 3.37 8.03 -2.39 -0.02 3.35 16 39 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.08 3.30 6.62 -2.39 -0.02 3.28 16 Total: -1.00 -72.44 355.02 2.20 -70.24 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.29 Total: 15.31 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.34 Total: 14.28 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -6.34 Total: -104.82 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.12 Total: -43.18 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.44 2.20 -70.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804194807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.310 kcal (2) G-P(sol) polarization free energy of solvation -72.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds