Wall clock time and date at job start Tue Mar 31 2020 10:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39676 * 120.00536 * 260.27896 * 3 2 1 5 5 C 1.37727 * 119.99527 * 179.81250 * 4 3 2 6 6 C 1.39623 * 120.00520 * 0.44368 * 5 4 3 7 7 C 1.47905 * 119.99789 * 179.76507 * 6 5 4 8 8 O 1.21544 * 120.00365 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99983 * 0.02562 * 7 6 5 10 10 N 1.40095 * 120.00212 * 180.02562 * 9 7 6 11 11 C 1.34777 * 119.99841 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00386 * 359.97438 * 11 10 9 13 13 C 1.50706 * 120.00076 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47306 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46888 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.46768 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46805 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00445 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99835 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99697 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47302 * 90.00259 * 21 19 17 23 23 H 1.48506 * 109.46779 * 210.00276 * 21 19 17 24 24 H 1.48500 * 109.47473 * 329.99881 * 21 19 17 25 25 C 1.39629 * 120.01014 * 359.78390 * 6 5 4 26 26 C 1.37725 * 120.00781 * 0.02562 * 25 6 5 27 27 H 1.08007 * 119.99916 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.99389 * 180.20547 * 5 4 3 29 29 H 0.97005 * 119.99818 * 359.97438 * 9 7 6 30 30 H 0.96996 * 120.00277 * 359.97438 * 10 9 7 31 31 H 1.08999 * 109.47091 * 300.00094 * 13 11 10 32 32 H 1.09002 * 109.46479 * 59.99892 * 13 11 10 33 33 H 1.08999 * 109.47494 * 300.00302 * 14 13 11 34 34 H 1.09006 * 109.46826 * 60.00252 * 14 13 11 35 35 H 1.08995 * 109.47363 * 299.99921 * 15 14 13 36 36 H 1.09006 * 109.47213 * 60.00450 * 15 14 13 37 37 H 1.08995 * 109.47117 * 300.00076 * 16 15 14 38 38 H 1.09002 * 109.47126 * 60.00707 * 16 15 14 39 39 H 0.96998 * 119.99764 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.99819 * 179.97438 * 25 6 5 41 41 H 1.07994 * 120.00820 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 0.2052 1.1922 5 6 4.6436 0.2019 1.1926 6 6 5.3418 0.0034 -0.0001 7 6 6.8208 0.0051 -0.0004 8 8 7.4286 -0.1673 -1.0387 9 7 7.4947 0.1978 1.1509 10 7 8.8956 0.1999 1.1507 11 6 9.5694 0.3921 2.3020 12 8 8.9629 0.5636 3.3382 13 6 11.0764 0.3938 2.3019 14 6 11.5863 0.6316 3.7247 15 6 13.1162 0.6340 3.7244 16 6 13.6261 0.8724 5.1472 17 6 15.1332 0.8741 5.1470 18 1 15.6733 0.7210 4.2244 19 6 15.8225 1.0712 6.3247 20 7 17.1376 1.0732 6.3245 21 14 14.8883 1.3354 7.9206 22 1 14.6429 0.0243 8.5735 23 1 15.6896 2.1972 8.8264 24 1 13.5896 1.9948 7.6308 25 6 4.6438 -0.1964 -1.1929 26 6 3.2666 -0.1971 -1.1932 27 1 2.7263 0.3625 2.1142 28 1 5.1836 0.3568 2.1151 29 1 7.0096 0.3357 1.9796 30 1 9.3807 0.0624 0.3220 31 1 11.4408 -0.5679 1.9409 32 1 11.4387 1.1880 1.6490 33 1 11.2219 1.5935 4.0853 34 1 11.2239 -0.1623 4.3779 35 1 13.4810 -0.3277 3.3637 36 1 13.4782 1.4281 3.0713 37 1 13.2613 1.8342 5.5074 38 1 13.2642 0.0785 5.8006 39 1 17.6225 1.2115 7.1531 40 1 5.1840 -0.3495 -2.1155 41 1 2.7268 -0.3512 -2.1158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805170837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:39 Heat of formation + Delta-G solvation = 0.705311 kcal Electronic energy + Delta-G solvation = -23329.472093 eV Core-core repulsion = 19596.354093 eV Total energy + Delta-G solvation = -3733.118000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15450 -40.03829 -39.00452 -36.99836 -35.91096 -35.07025 -33.10662 -32.61391 -31.95510 -31.26978 -29.85542 -26.30809 -25.36585 -23.51704 -22.48457 -22.05383 -20.78150 -20.10473 -19.73776 -18.51736 -18.24124 -16.76992 -16.48687 -16.23847 -16.20550 -15.57321 -15.50509 -15.11117 -14.67636 -14.45046 -14.39837 -14.24924 -14.15423 -14.02309 -13.43844 -12.98061 -12.87850 -12.70373 -12.62162 -12.24425 -11.90766 -11.82638 -11.68160 -11.18762 -10.86819 -10.82076 -10.61186 -10.33138 -9.89181 -9.88894 -9.79765 -9.69952 -9.53685 -9.15606 -8.77770 -8.51903 -6.02886 -4.00675 -0.38159 0.51592 1.35868 1.72579 2.00397 2.29815 2.61984 3.10051 3.17384 3.32859 3.40240 3.45119 3.46188 3.96924 3.98108 4.09157 4.39908 4.47452 4.57076 4.62790 4.81210 5.06074 5.14229 5.14282 5.27897 5.31847 5.41900 5.47679 5.61339 5.87636 5.92820 6.02719 6.18501 6.26440 6.33988 6.60084 6.73860 6.79997 6.93416 7.08589 7.33412 7.39685 7.46304 7.81800 7.97217 8.55460 9.02133 9.60257 11.10595 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.001678 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.892515 B =16686.247297 C =17509.087057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.249 3.751 3 C 0.000 4.000 4 C -0.074 4.074 5 C -0.086 4.086 6 C -0.097 4.097 7 C 0.556 3.444 8 O -0.531 6.531 9 N -0.516 5.516 10 N -0.529 5.529 11 C 0.516 3.484 12 O -0.535 6.535 13 C -0.128 4.128 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.015 4.015 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.055 4.055 26 C -0.076 4.076 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.431 0.569 30 H 0.433 0.567 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.151 0.849 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.557 -2.667 -15.961 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.067 4.067 3 C -0.004 4.004 4 C -0.094 4.094 5 C -0.105 4.105 6 C -0.102 4.102 7 C 0.343 3.657 8 O -0.407 6.407 9 N -0.264 5.264 10 N -0.279 5.279 11 C 0.304 3.696 12 O -0.409 6.409 13 C -0.169 4.169 14 C -0.144 4.144 15 C -0.141 4.141 16 C -0.053 4.053 17 C -0.559 4.559 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.074 4.074 26 C -0.097 4.097 27 H 0.161 0.839 28 H 0.158 0.842 29 H 0.275 0.725 30 H 0.276 0.724 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.169 0.831 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -30.143 -2.638 -15.808 34.139 hybrid contribution 0.067 0.131 0.939 0.951 sum -30.076 -2.507 -14.869 33.644 Atomic orbital electron populations 1.81308 1.11979 1.07727 1.06823 1.25641 0.92588 0.94278 0.94210 1.16185 0.84549 1.04321 0.95300 1.21154 0.93813 0.97216 0.97266 1.21315 0.94145 0.97534 0.97505 1.19868 0.91565 1.03719 0.95058 1.18286 0.87195 0.77632 0.82636 1.90833 1.69238 1.49553 1.31040 1.44727 0.96175 1.73407 1.12051 1.45295 0.93653 1.75866 1.13120 1.21574 0.91063 0.75309 0.81642 1.90728 1.70095 1.48750 1.31325 1.21776 0.87487 1.05092 1.02567 1.21526 0.97502 1.02877 0.92507 1.21487 0.91332 1.01145 1.00133 1.19575 0.96962 0.96278 0.92445 1.21182 0.89645 1.49131 0.95946 0.91064 1.25041 0.94720 0.94702 0.99089 1.69919 1.06320 1.50683 1.27505 0.86778 0.80414 0.78511 0.83596 1.20333 1.21451 1.18927 1.21215 0.93192 0.94974 0.98053 1.21210 0.93820 0.97460 0.97165 0.83863 0.84225 0.72510 0.72410 0.88120 0.88124 0.91541 0.91543 0.92664 0.92642 0.96593 0.97036 0.92793 0.83096 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -3.59 18.54 41.83 0.78 -2.81 16 2 C 0.25 1.52 15.32 -22.47 -0.34 1.18 16 3 C 0.00 0.00 5.73 -106.90 -0.61 -0.61 16 4 C -0.07 -0.23 9.73 -39.23 -0.38 -0.61 16 5 C -0.09 -0.30 9.52 -39.25 -0.37 -0.67 16 6 C -0.10 -0.50 5.88 -104.90 -0.62 -1.12 16 7 C 0.56 4.36 7.89 -12.30 -0.10 4.26 16 8 O -0.53 -5.64 16.17 5.33 0.09 -5.55 16 9 N -0.52 -4.08 6.21 30.54 0.19 -3.89 16 10 N -0.53 -4.70 6.26 31.22 0.20 -4.50 16 11 C 0.52 5.71 7.95 -10.98 -0.09 5.62 16 12 O -0.53 -7.67 15.82 5.56 0.09 -7.58 16 13 C -0.13 -1.34 5.70 -27.88 -0.16 -1.50 16 14 C -0.11 -1.57 4.50 -26.73 -0.12 -1.70 16 15 C -0.10 -1.89 5.15 -26.73 -0.14 -2.02 16 16 C -0.02 -0.36 4.04 -27.88 -0.11 -0.47 16 17 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -27.92 13.96 55.43 0.77 -27.15 16 21 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 25 C -0.06 -0.24 9.58 -39.25 -0.38 -0.61 16 26 C -0.08 -0.24 9.73 -39.23 -0.38 -0.62 16 27 H 0.14 0.20 8.06 -52.48 -0.42 -0.22 16 28 H 0.14 0.27 6.39 -52.48 -0.34 -0.07 16 29 H 0.43 2.88 6.02 -182.60 -1.10 1.78 16 30 H 0.43 3.25 8.00 -182.61 -1.46 1.79 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.15 0.60 7.64 -52.49 -0.40 0.20 16 41 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -36.34 365.03 -8.32 -44.66 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -7.03 Total: -3.65 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -4.23 Total: -12.18 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 1.93 Total: -38.36 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.17 Total: -13.13 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.34 -8.32 -44.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805170837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.363 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds