Wall clock time and date at job start Tue Mar 31 2020 10:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30198 * 126.20983 * 2 1 4 4 N 1.39799 * 110.13604 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.33925 * 180.02562 * 4 3 2 6 6 C 1.36619 * 109.32294 * 359.97438 * 4 3 2 7 7 N 1.32941 * 133.26209 * 179.97438 * 6 4 3 8 8 C 1.31176 * 121.85277 * 180.02562 * 7 6 4 9 9 C 1.40236 * 121.36811 * 0.02562 * 8 7 6 10 10 C 1.47559 * 120.41823 * 180.02562 * 9 8 7 11 11 O 1.21487 * 120.00289 * 180.02562 * 10 9 8 12 12 O 1.34734 * 119.99438 * 359.97438 * 10 9 8 13 13 C 1.45199 * 116.99619 * 182.99256 * 12 10 9 14 14 C 1.50704 * 112.85245 * 294.89002 * 13 12 10 15 15 H 1.07998 * 120.00098 * 118.52359 * 14 13 12 16 16 C 1.37878 * 119.99482 * 298.51843 * 14 13 12 17 17 N 1.31518 * 120.00408 * 1.78885 * 16 14 13 18 18 Si 1.86800 * 119.99742 * 181.78189 * 16 14 13 19 19 H 1.48505 * 109.47135 * 270.00158 * 18 16 14 20 20 H 1.48494 * 109.47125 * 30.00350 * 18 16 14 21 21 H 1.48504 * 109.47177 * 150.00619 * 18 16 14 22 22 C 1.53780 * 113.61493 * 66.08282 * 13 12 10 23 23 C 1.53957 * 87.02052 * 89.23016 * 22 13 12 24 24 C 1.53781 * 113.61624 * 163.69008 * 13 12 10 25 25 C 1.39573 * 119.16736 * 0.26926 * 9 8 7 26 26 C 1.39636 * 117.94611 * 359.47026 * 25 9 8 27 27 H 1.09001 * 109.46625 * 89.97686 * 1 2 3 28 28 H 1.08997 * 109.47132 * 209.98300 * 1 2 3 29 29 H 1.08995 * 109.46772 * 329.98374 * 1 2 3 30 30 H 1.09004 * 109.46972 * 269.97109 * 5 4 3 31 31 H 1.08996 * 109.47174 * 29.97189 * 5 4 3 32 32 H 1.08995 * 109.47034 * 149.97649 * 5 4 3 33 33 H 1.08001 * 119.31463 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99490 * 355.05502 * 17 16 14 35 35 H 1.08998 * 113.62013 * 203.74277 * 22 13 12 36 36 H 1.09004 * 113.61529 * 334.65143 * 22 13 12 37 37 H 1.09004 * 113.53708 * 270.81364 * 23 22 13 38 38 H 1.08997 * 113.74996 * 139.94755 * 23 22 13 39 39 H 1.09007 * 113.61146 * 25.34696 * 24 13 12 40 40 H 1.08996 * 113.62022 * 156.16509 * 24 13 12 41 41 H 1.08000 * 121.02224 * 179.73000 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0505 0.0000 4 7 3.6195 0.6634 -0.0006 5 6 4.7647 1.5772 -0.0002 6 6 3.6969 -0.7005 -0.0004 7 7 4.7151 -1.5553 -0.0012 8 6 4.5289 -2.8538 -0.0013 9 6 3.2401 -3.4064 -0.0011 10 6 3.0549 -4.8703 -0.0006 11 8 1.9349 -5.3410 -0.0009 12 8 4.1280 -5.6850 -0.0009 13 6 3.8717 -7.1126 -0.0679 14 6 3.1542 -7.6363 1.1495 15 1 2.1785 -8.0882 1.0486 16 6 3.7434 -7.5383 2.3922 17 7 4.9159 -6.9565 2.5201 18 14 2.8763 -8.2320 3.8943 19 1 2.0131 -7.1838 4.4956 20 1 2.0400 -9.3911 3.4918 21 1 3.8865 -8.6723 4.8898 22 6 3.2410 -7.5636 -1.3960 23 6 4.6761 -7.7446 -1.9233 24 6 5.1057 -7.9423 -0.4600 25 6 2.1346 -2.5543 -0.0065 26 6 2.3693 -1.1779 -0.0005 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3633 -0.8901 0.5136 29 1 -0.3633 0.8898 0.5141 30 1 5.0487 1.8041 -1.0278 31 1 4.4936 2.4993 0.5139 32 1 5.6037 1.1079 0.5134 33 1 5.3861 -3.5109 -0.0023 34 1 5.3989 -6.6605 1.7326 35 1 2.6830 -8.4968 -1.3198 36 1 2.6841 -6.7765 -1.9043 37 1 5.0881 -6.8455 -2.3816 38 1 4.8080 -8.6329 -2.5410 39 1 6.0520 -7.4605 -0.2139 40 1 5.0591 -8.9789 -0.1261 41 1 1.1288 -2.9476 -0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:42 Heat of formation + Delta-G solvation = 18.638579 kcal Electronic energy + Delta-G solvation = -26227.293377 eV Core-core repulsion = 22494.953021 eV Total energy + Delta-G solvation = -3732.340356 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.82593 -41.38427 -39.56535 -38.54917 -36.11805 -35.51411 -34.48692 -33.05368 -31.65634 -30.49538 -28.08707 -27.17189 -26.48888 -25.20742 -25.06116 -24.14233 -22.24603 -21.08238 -20.30493 -19.60739 -18.72746 -18.49231 -17.60278 -17.14582 -17.05312 -16.66419 -16.54351 -15.69731 -15.62028 -15.22924 -14.83181 -14.56582 -14.48183 -14.46499 -14.28982 -14.23632 -13.89334 -13.70185 -13.19943 -13.19175 -12.79400 -12.73925 -12.37443 -12.28591 -12.18482 -12.01702 -11.91112 -11.81220 -11.61553 -11.45116 -10.90230 -10.73070 -10.53151 -10.24553 -10.11404 -9.45034 -8.56206 -6.35353 -0.50676 -0.43347 0.96422 1.18490 1.51203 1.56127 1.66530 1.76558 1.95587 2.54247 2.60671 2.90473 3.04854 3.21151 3.25645 3.59913 3.67765 3.83957 3.86075 4.00625 4.05974 4.17455 4.25854 4.34067 4.35009 4.52528 4.60551 4.73005 4.75006 4.77717 4.83581 4.92745 4.93573 5.02715 5.07378 5.11684 5.35609 5.40217 5.56276 5.60209 5.74993 6.13005 6.20988 6.24634 6.59316 6.65494 7.12178 7.46446 8.82029 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.003920 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.264372 B = 7141.949799 C = 7517.403210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.128 3.872 3 N -0.257 5.257 4 N -0.396 5.396 5 C 0.104 3.896 6 C 0.317 3.683 7 N -0.516 5.516 8 C 0.227 3.773 9 C -0.229 4.229 10 C 0.515 3.485 11 O -0.529 6.529 12 O -0.353 6.353 13 C 0.188 3.812 14 C -0.606 4.606 15 H 0.039 0.961 16 C -0.009 4.009 17 N -0.914 5.914 18 Si 1.103 2.897 19 H -0.286 1.286 20 H -0.271 1.271 21 H -0.277 1.277 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.109 4.109 25 C 0.079 3.921 26 C -0.249 4.249 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.184 0.816 34 H 0.272 0.728 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 14.115 -7.168 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 N -0.070 5.070 4 N -0.185 5.185 5 C -0.036 4.036 6 C 0.076 3.924 7 N -0.231 5.231 8 C 0.057 3.943 9 C -0.235 4.235 10 C 0.359 3.641 11 O -0.420 6.420 12 O -0.270 6.270 13 C 0.154 3.846 14 C -0.643 4.643 15 H 0.057 0.943 16 C -0.212 4.212 17 N -0.550 5.550 18 Si 0.926 3.074 19 H -0.213 1.213 20 H -0.196 1.196 21 H -0.202 1.202 22 C -0.181 4.181 23 C -0.159 4.159 24 C -0.147 4.147 25 C 0.051 3.949 26 C -0.259 4.259 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.201 0.799 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.254 15.660 -5.552 16.767 hybrid contribution -0.709 -1.219 -1.425 2.005 sum -2.963 14.441 -6.977 16.309 Atomic orbital electron populations 1.20557 0.81979 1.05624 1.05466 1.24174 0.98548 0.86635 0.95642 1.76658 0.86338 1.23025 1.21004 1.48405 1.05522 1.01234 1.63345 1.22137 0.83708 0.93107 1.04616 1.19519 0.90809 0.87341 0.94691 1.66816 1.32843 1.02805 1.20619 1.23150 0.96294 0.89120 0.85716 1.20066 0.96385 0.90835 1.16206 1.20715 0.83286 0.87290 0.72763 1.90714 1.26339 1.77993 1.46936 1.86388 1.36623 1.21617 1.82366 1.21139 0.95366 0.74098 0.93983 1.22255 1.05017 1.42681 0.94378 0.94280 1.26932 0.96522 0.94126 1.03600 1.70770 1.14065 1.36061 1.34103 0.83114 0.74915 0.76369 0.72957 1.21264 1.19640 1.20196 1.23314 0.97038 1.00819 0.96920 1.22869 0.94990 1.02397 0.95675 1.22913 0.96696 0.99219 0.95852 1.21245 0.99751 0.89610 0.84246 1.20497 0.94372 0.94572 1.16436 0.87572 0.88588 0.88262 0.89584 0.87384 0.88837 0.79905 0.91643 0.90176 0.93357 0.89901 0.89345 0.92577 0.89884 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.48 71.24 0.75 -0.37 16 2 C 0.13 3.07 7.44 44.81 0.33 3.40 16 3 N -0.26 -6.53 12.39 -43.68 -0.54 -7.07 16 4 N -0.40 -10.44 4.03 -366.43 -1.48 -11.92 16 5 C 0.10 1.81 11.43 127.77 1.46 3.27 16 6 C 0.32 9.88 7.96 134.18 1.07 10.95 16 7 N -0.52 -17.06 10.37 -191.92 -1.99 -19.05 16 8 C 0.23 7.92 10.76 85.28 0.92 8.84 16 9 C -0.23 -8.66 5.89 -20.01 -0.12 -8.77 16 10 C 0.51 23.76 7.28 70.28 0.51 24.27 16 11 O -0.53 -26.78 14.55 19.88 0.29 -26.49 16 12 O -0.35 -17.08 8.35 -56.45 -0.47 -17.55 16 13 C 0.19 9.26 0.11 -11.01 0.00 9.26 16 14 C -0.61 -34.02 7.35 25.60 0.19 -33.83 16 15 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 16 C -0.01 -0.50 5.40 84.65 0.46 -0.04 16 17 N -0.91 -53.50 13.51 21.45 0.29 -53.21 16 18 Si 1.10 50.91 29.90 68.60 2.05 52.97 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 C -0.14 -6.10 6.90 31.18 0.22 -5.89 16 23 C -0.12 -4.32 8.03 31.18 0.25 -4.07 16 24 C -0.11 -4.68 6.67 31.12 0.21 -4.48 16 25 C 0.08 2.55 9.76 22.93 0.22 2.77 16 26 C -0.25 -7.38 6.33 -20.24 -0.13 -7.51 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.18 6.13 7.60 -2.91 -0.02 6.11 16 34 H 0.27 15.85 5.76 -92.71 -0.53 15.31 16 35 H 0.08 3.39 8.09 -2.39 -0.02 3.37 16 36 H 0.05 2.07 7.32 -2.39 -0.02 2.06 16 37 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.06 2.41 7.77 -2.38 -0.02 2.39 16 40 H 0.08 3.61 8.09 -2.39 -0.02 3.59 16 41 H 0.17 4.77 7.72 -2.91 -0.02 4.75 16 Total: -1.00 -72.54 351.53 5.77 -66.77 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.29 Total: 17.77 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 6.33 Total: -2.21 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -3.72 Total: -91.25 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.18 Total: -44.04 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.97 kcal Total: -72.54 5.77 -66.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.404 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds