Wall clock time and date at job start Tue Mar 31 2020 10:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.39942 * 119.99708 * 179.97438 * 10 9 7 12 12 C 1.38861 * 120.02154 * 359.73393 * 11 10 9 13 13 C 1.38108 * 119.98073 * 179.74205 * 12 11 10 14 14 C 1.38696 * 120.01722 * 0.50378 * 13 12 11 15 15 O 1.36001 * 119.98124 * 179.75062 * 14 13 12 16 16 C 1.42905 * 116.99906 * 0.02562 * 15 14 13 17 17 C 1.50701 * 109.47100 * 180.02562 * 16 15 14 18 18 N 1.29944 * 126.28930 * 269.68538 * 17 16 15 19 19 O 1.21301 * 110.25259 * 179.84206 * 18 17 16 20 20 C 1.33642 * 109.80921 * 0.43117 * 19 18 17 21 21 C 1.50701 * 126.55454 * 179.75654 * 20 19 18 22 22 C 1.53004 * 117.49199 * 8.59328 * 21 20 19 23 23 C 1.52999 * 117.49482 * 299.97558 * 21 20 19 24 24 N 1.31135 * 106.90061 * 359.73547 * 20 19 18 25 25 C 1.38702 * 120.04020 * 359.76690 * 14 13 12 26 26 C 1.38111 * 120.01708 * 359.97438 * 25 14 13 27 27 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 29 29 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 30 30 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 31 31 H 1.08006 * 120.00671 * 359.97438 * 12 11 10 32 32 H 1.07998 * 119.98584 * 180.22997 * 13 12 11 33 33 H 1.08996 * 109.46967 * 300.00382 * 16 15 14 34 34 H 1.08997 * 109.46869 * 60.00097 * 16 15 14 35 35 H 1.08993 * 115.55271 * 154.30271 * 21 20 19 36 36 H 1.08996 * 117.50468 * 0.02562 * 22 21 20 37 37 H 1.09007 * 117.49571 * 145.02353 * 22 21 20 38 38 H 1.08999 * 117.49892 * 214.97641 * 23 21 20 39 39 H 1.08996 * 117.50209 * 359.97438 * 23 21 20 40 40 H 1.08001 * 119.99057 * 179.97438 * 25 14 13 41 41 H 1.07997 * 120.00629 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7370 -4.9320 0.0011 12 6 0.3718 -5.1863 0.0072 13 6 -0.0876 -6.4887 0.0023 14 6 0.8142 -7.5425 0.0019 15 8 0.3610 -8.8248 0.0023 16 6 -1.0557 -9.0122 0.0025 17 6 -1.3674 -10.4866 0.0035 18 7 -1.5322 -11.2386 -1.0434 19 8 -1.7684 -12.3800 -0.7075 20 6 -1.7863 -12.4652 0.6261 21 6 -2.0481 -13.7043 1.4428 22 6 -2.1229 -15.0386 0.6978 23 6 -3.3971 -14.4016 1.2559 24 7 -1.5320 -11.2646 1.0882 25 6 2.1779 -7.2894 0.0015 26 6 2.6390 -5.9876 0.0009 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 3.1570 -3.4352 0.0009 31 1 -0.3304 -4.3657 0.0120 32 1 -1.1493 -6.6866 0.0033 33 1 -1.4831 -8.5502 0.8924 34 1 -1.4834 -8.5506 -0.8875 35 1 -1.6132 -13.7092 2.4422 36 1 -1.9823 -15.0203 -0.3829 37 1 -1.7370 -15.9217 1.2071 38 1 -3.8495 -14.8655 2.1324 39 1 -4.0953 -13.9639 0.5426 40 1 2.8794 -8.1106 0.0016 41 1 3.7009 -5.7907 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819451539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:25 Heat of formation + Delta-G solvation = 89.016895 kcal Electronic energy + Delta-G solvation = -23886.623109 eV Core-core repulsion = 20157.334586 eV Total energy + Delta-G solvation = -3729.288523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.96592 -39.80285 -38.05246 -37.76326 -36.12282 -34.51171 -32.72212 -32.38831 -30.62778 -29.18073 -27.90110 -25.90515 -25.44191 -23.93384 -23.18148 -23.03390 -21.96531 -20.75761 -20.70901 -18.59839 -17.97670 -17.81011 -17.18636 -16.90771 -15.89658 -15.67879 -15.57737 -15.09395 -14.78646 -14.29447 -14.04669 -13.51879 -13.30943 -13.20725 -12.84829 -12.64427 -12.59587 -12.28879 -12.18868 -12.12661 -12.06059 -11.87371 -11.51391 -11.40481 -11.25187 -11.10693 -10.87306 -10.80381 -10.47212 -10.15121 -10.06106 -9.39256 -9.08403 -8.60686 -8.45584 -6.38973 -6.22780 -4.27787 0.72776 1.68428 1.78633 2.13442 2.33085 2.94864 3.12306 3.20839 3.28449 3.31948 3.49605 3.90893 4.06223 4.21155 4.24386 4.29017 4.34686 4.58043 4.70349 4.91482 4.99933 5.07737 5.14686 5.16761 5.24505 5.33188 5.34048 5.37985 5.43291 5.63340 5.77357 5.79907 6.06331 6.42047 6.50021 6.82546 6.89627 7.00416 7.18755 7.41153 7.58102 7.71285 7.81548 7.93367 8.28349 8.66289 8.89839 9.38857 10.87939 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.042092 B = 0.001803 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.056752 B =15528.382078 C =15889.962608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.731 5.731 11 C 0.208 3.792 12 C -0.165 4.165 13 C -0.149 4.149 14 C 0.038 3.962 15 O -0.317 6.317 16 C 0.157 3.843 17 C 0.176 3.824 18 N -0.362 5.362 19 O 0.084 5.916 20 C 0.207 3.793 21 C -0.080 4.080 22 C -0.158 4.158 23 C -0.153 4.153 24 N -0.462 5.462 25 C -0.093 4.093 26 C -0.180 4.180 27 H 0.265 0.735 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.391 0.609 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -28.583 2.104 29.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.356 5.356 11 C 0.100 3.900 12 C -0.189 4.189 13 C -0.169 4.169 14 C -0.007 4.007 15 O -0.231 6.231 16 C 0.080 3.920 17 C -0.097 4.097 18 N -0.068 5.068 19 O 0.022 5.978 20 C -0.013 4.013 21 C -0.100 4.100 22 C -0.196 4.196 23 C -0.191 4.191 24 N -0.195 5.195 25 C -0.112 4.112 26 C -0.203 4.203 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.225 0.775 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.169 0.831 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.610 -27.722 1.592 28.329 hybrid contribution 0.539 1.124 0.069 1.249 sum -5.071 -26.598 1.661 27.128 Atomic orbital electron populations 1.69949 1.06090 1.27246 1.49438 1.24933 0.94938 0.99481 0.94664 0.86354 0.79912 0.82884 0.77753 1.19633 1.20778 1.20776 1.21242 0.93423 0.90425 1.52563 0.91907 1.19102 0.88717 0.82747 0.96503 1.45489 1.09453 1.02164 1.78459 1.18033 0.92650 0.85895 0.93460 1.20560 0.94318 0.96298 1.07688 1.20899 0.98401 0.92511 1.05059 1.18466 0.93228 0.81497 1.07524 1.85977 1.20637 1.25556 1.90959 1.20448 0.82955 0.84633 1.03981 1.25322 1.01525 0.99350 0.83461 1.74693 1.18173 0.90418 1.23497 1.85288 1.63787 1.24050 1.24687 1.27692 0.96101 0.95664 0.81841 1.20336 1.05068 0.85602 0.99008 1.23194 1.00772 0.94182 1.01422 1.23187 0.90077 1.01557 1.04258 1.71870 1.18399 1.00251 1.29017 1.19959 0.91985 0.96359 1.02897 1.20348 0.98715 0.90831 1.10408 0.92517 0.96250 0.96228 0.77544 0.85278 0.86276 0.88846 0.89314 0.83120 0.87355 0.86740 0.86691 0.87827 0.86127 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 9 C 0.25 6.34 4.67 -5.19 -0.02 6.31 16 10 N -0.73 -15.49 5.74 -59.76 -0.34 -15.83 16 11 C 0.21 4.02 6.66 -83.70 -0.56 3.46 16 12 C -0.17 -3.12 9.31 -39.40 -0.37 -3.49 16 13 C -0.15 -2.45 9.03 -39.46 -0.36 -2.81 16 14 C 0.04 0.63 6.69 -39.24 -0.26 0.36 16 15 O -0.32 -5.01 10.12 -19.74 -0.20 -5.21 16 16 C 0.16 2.05 5.36 36.01 0.19 2.25 16 17 C 0.18 2.38 7.85 -156.37 -1.23 1.15 16 18 N -0.36 -4.83 12.16 30.90 0.38 -4.45 16 19 O 0.08 0.93 11.08 18.10 0.20 1.13 16 20 C 0.21 2.03 7.97 -13.05 -0.10 1.93 16 21 C -0.08 -0.43 6.33 -91.77 -0.58 -1.02 16 22 C -0.16 -0.51 10.18 -26.73 -0.27 -0.78 16 23 C -0.15 -0.51 10.23 -26.73 -0.27 -0.78 16 24 N -0.46 -5.87 11.55 -9.87 -0.11 -5.98 16 25 C -0.09 -1.49 9.98 -39.46 -0.39 -1.89 16 26 C -0.18 -3.02 9.89 -39.40 -0.39 -3.40 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 28 H 0.02 0.53 7.96 -51.93 -0.41 0.12 16 29 H 0.02 0.54 7.94 -51.93 -0.41 0.12 16 30 H 0.39 7.68 8.34 -40.82 -0.34 7.34 16 31 H 0.13 2.56 6.73 -52.48 -0.35 2.21 16 32 H 0.12 1.63 6.29 -52.49 -0.33 1.30 16 33 H 0.09 1.10 7.66 -51.93 -0.40 0.70 16 34 H 0.09 1.04 7.66 -51.93 -0.40 0.65 16 35 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.38 8.00 -51.93 -0.42 -0.03 16 37 H 0.11 0.16 8.14 -51.92 -0.42 -0.26 16 38 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -31.76 358.84 -9.12 -40.88 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.13 Total: 4.95 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -5.03 Total: -11.93 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.66 Total: -51.04 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: 0.00 Total: -4.09 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.76 -9.12 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819451539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.892 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds