Wall clock time and date at job start Tue Mar 31 2020 10:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.39942 * 119.99708 * 179.97438 * 10 9 7 12 12 C 1.38861 * 120.02154 * 359.73393 * 11 10 9 13 13 C 1.38108 * 119.98073 * 179.74205 * 12 11 10 14 14 C 1.38696 * 120.01722 * 0.50378 * 13 12 11 15 15 O 1.36001 * 119.98124 * 179.75062 * 14 13 12 16 16 C 1.42905 * 116.99906 * 0.02562 * 15 14 13 17 17 C 1.50701 * 109.47100 * 180.02562 * 16 15 14 18 18 N 1.29944 * 126.28930 * 269.68538 * 17 16 15 19 19 O 1.21301 * 110.25259 * 179.84206 * 18 17 16 20 20 C 1.33642 * 109.80921 * 0.43117 * 19 18 17 21 21 C 1.50701 * 126.55454 * 179.75654 * 20 19 18 22 22 C 1.53004 * 117.49199 * 8.59328 * 21 20 19 23 23 C 1.52999 * 117.49482 * 299.97558 * 21 20 19 24 24 N 1.31135 * 106.90061 * 359.73547 * 20 19 18 25 25 C 1.38702 * 120.04020 * 359.76690 * 14 13 12 26 26 C 1.38111 * 120.01708 * 359.97438 * 25 14 13 27 27 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 29 29 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 30 30 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 31 31 H 1.08006 * 120.00671 * 359.97438 * 12 11 10 32 32 H 1.07998 * 119.98584 * 180.22997 * 13 12 11 33 33 H 1.08996 * 109.46967 * 300.00382 * 16 15 14 34 34 H 1.08997 * 109.46869 * 60.00097 * 16 15 14 35 35 H 1.08993 * 115.55271 * 154.30271 * 21 20 19 36 36 H 1.08996 * 117.50468 * 0.02562 * 22 21 20 37 37 H 1.09007 * 117.49571 * 145.02353 * 22 21 20 38 38 H 1.08999 * 117.49892 * 214.97641 * 23 21 20 39 39 H 1.08996 * 117.50209 * 359.97438 * 23 21 20 40 40 H 1.08001 * 119.99057 * 179.97438 * 25 14 13 41 41 H 1.07997 * 120.00629 * 179.97438 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7370 -4.9320 0.0011 12 6 0.3718 -5.1863 0.0072 13 6 -0.0876 -6.4887 0.0023 14 6 0.8142 -7.5425 0.0019 15 8 0.3610 -8.8248 0.0023 16 6 -1.0557 -9.0122 0.0025 17 6 -1.3674 -10.4866 0.0035 18 7 -1.5322 -11.2386 -1.0434 19 8 -1.7684 -12.3800 -0.7075 20 6 -1.7863 -12.4652 0.6261 21 6 -2.0481 -13.7043 1.4428 22 6 -2.1229 -15.0386 0.6978 23 6 -3.3971 -14.4016 1.2559 24 7 -1.5320 -11.2646 1.0882 25 6 2.1779 -7.2894 0.0015 26 6 2.6390 -5.9876 0.0009 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6243 -2.5567 0.8903 30 1 3.1570 -3.4352 0.0009 31 1 -0.3304 -4.3657 0.0120 32 1 -1.1493 -6.6866 0.0033 33 1 -1.4831 -8.5502 0.8924 34 1 -1.4834 -8.5506 -0.8875 35 1 -1.6132 -13.7092 2.4422 36 1 -1.9823 -15.0203 -0.3829 37 1 -1.7370 -15.9217 1.2071 38 1 -3.8495 -14.8655 2.1324 39 1 -4.0953 -13.9639 0.5426 40 1 2.8794 -8.1106 0.0016 41 1 3.7009 -5.7907 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819451539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:24 Heat of formation + Delta-G solvation = 68.421532 kcal Electronic energy + Delta-G solvation = -23887.516191 eV Core-core repulsion = 20157.334586 eV Total energy + Delta-G solvation = -3730.181605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.87302 -41.11206 -39.14054 -38.41871 -37.10376 -36.17730 -34.43499 -33.48751 -31.99042 -30.63404 -29.28393 -27.59666 -26.11293 -25.10000 -24.71371 -23.30362 -23.24938 -22.23709 -21.59021 -19.62292 -19.24750 -18.85547 -18.67553 -17.51834 -17.46418 -17.16185 -16.61266 -16.56848 -15.75891 -15.59352 -15.36925 -15.01383 -14.69882 -14.20322 -14.17683 -14.00984 -13.91308 -13.54549 -13.35378 -13.27909 -13.03993 -12.84088 -12.70674 -12.43030 -12.39793 -12.29472 -12.18918 -12.14871 -11.66524 -11.52800 -11.40355 -10.85949 -10.79311 -10.32376 -9.92576 -8.31446 -7.94256 -6.44888 -0.10830 0.41924 0.72470 0.75926 1.40702 1.40834 1.54224 1.62151 2.02055 2.33657 2.53217 2.82696 2.90030 2.93330 2.94963 3.04377 3.59492 3.69585 3.84130 3.93879 3.95482 4.01096 4.17782 4.23243 4.41800 4.48089 4.49617 4.67233 4.75179 4.80056 4.95061 4.96749 5.04858 5.09188 5.21783 5.22800 5.30410 5.41032 5.48630 5.53330 5.72626 5.89487 6.36629 6.49433 6.75490 6.94279 7.17395 7.29786 8.80590 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.042092 B = 0.001803 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.056752 B =15528.382078 C =15889.962608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.272 3.728 10 N -0.736 5.736 11 C 0.180 3.820 12 C -0.184 4.184 13 C -0.148 4.148 14 C 0.046 3.954 15 O -0.326 6.326 16 C 0.153 3.847 17 C 0.162 3.838 18 N -0.382 5.382 19 O 0.088 5.912 20 C 0.221 3.779 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.141 4.141 24 N -0.492 5.492 25 C -0.094 4.094 26 C -0.166 4.166 27 H 0.269 0.731 28 H -0.010 1.010 29 H -0.009 1.009 30 H 0.398 0.602 31 H 0.107 0.893 32 H 0.143 0.857 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.164 0.836 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.146 0.854 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -30.623 2.548 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.148 3.852 10 N -0.364 5.364 11 C 0.075 3.925 12 C -0.207 4.207 13 C -0.167 4.167 14 C 0.000 4.000 15 O -0.240 6.240 16 C 0.076 3.924 17 C -0.111 4.111 18 N -0.089 5.089 19 O 0.025 5.975 20 C 0.002 3.998 21 C -0.123 4.123 22 C -0.182 4.182 23 C -0.179 4.179 24 N -0.226 5.226 25 C -0.113 4.113 26 C -0.189 4.189 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.233 0.767 31 H 0.125 0.875 32 H 0.161 0.839 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.181 0.819 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.116 0.884 40 H 0.164 0.836 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.807 -29.823 2.041 30.277 hybrid contribution 0.196 1.473 -0.053 1.486 sum -4.611 -28.351 1.987 28.792 Atomic orbital electron populations 1.70079 1.07831 1.28396 1.50267 1.25918 0.95813 1.03412 0.94000 0.85208 0.78901 0.77901 0.77813 1.18444 1.20300 1.20281 1.21633 0.94035 0.91297 1.52476 0.91051 1.18557 0.88772 0.84063 0.93776 1.45106 1.08938 1.02003 1.80339 1.18287 0.93345 0.85658 0.95247 1.20555 0.94201 0.96851 1.09129 1.21056 0.99879 0.91438 1.04331 1.18631 0.93566 0.81800 1.05977 1.85966 1.22429 1.24885 1.90707 1.20635 0.81563 0.85075 1.05109 1.25400 1.02194 0.99594 0.83904 1.74662 1.19005 0.91182 1.24061 1.85252 1.63711 1.23144 1.25398 1.28546 0.93597 0.96245 0.81416 1.20708 1.07470 0.84853 0.99294 1.23345 1.00163 0.93407 1.01261 1.23332 0.89345 1.00319 1.04924 1.71864 1.20191 1.01336 1.29170 1.20288 0.92413 0.96744 1.01888 1.20574 0.99545 0.90224 1.08541 0.92246 0.99171 0.99116 0.76727 0.87467 0.83945 0.87684 0.88189 0.81892 0.87777 0.84359 0.84428 0.88404 0.83609 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.58 13.29 21.45 0.28 -54.30 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.98 42.85 29.54 68.60 2.03 44.88 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.56 -30.68 9.28 25.60 0.24 -30.44 16 8 H 0.07 3.71 7.60 -2.91 -0.02 3.69 16 9 C 0.27 14.40 4.67 85.63 0.40 14.80 16 10 N -0.74 -32.03 5.74 -342.97 -1.97 -33.99 16 11 C 0.18 7.06 6.66 38.14 0.25 7.31 16 12 C -0.18 -7.19 9.31 22.39 0.21 -6.99 16 13 C -0.15 -4.83 9.03 22.35 0.20 -4.63 16 14 C 0.05 1.45 6.69 22.49 0.15 1.60 16 15 O -0.33 -9.90 10.12 -93.56 -0.95 -10.85 16 16 C 0.15 3.89 5.36 71.24 0.38 4.27 16 17 C 0.16 4.30 7.85 138.46 1.09 5.38 16 18 N -0.38 -10.08 12.16 -60.32 -0.73 -10.81 16 19 O 0.09 1.87 11.08 74.84 0.83 2.70 16 20 C 0.22 4.13 7.97 88.38 0.70 4.84 16 21 C -0.10 -0.92 6.33 -11.54 -0.07 -0.99 16 22 C -0.14 -0.54 10.18 30.60 0.31 -0.23 16 23 C -0.14 -0.58 10.23 30.59 0.31 -0.27 16 24 N -0.49 -12.25 11.55 -303.19 -3.50 -15.75 16 25 C -0.09 -2.85 9.98 22.35 0.22 -2.63 16 26 C -0.17 -5.36 9.89 22.39 0.22 -5.13 16 27 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 28 H -0.01 -0.55 7.96 -2.38 -0.02 -0.57 16 29 H -0.01 -0.52 7.94 -2.39 -0.02 -0.53 16 30 H 0.40 15.76 8.34 -92.71 -0.77 14.99 16 31 H 0.11 4.60 6.73 -2.91 -0.02 4.58 16 32 H 0.14 3.84 6.29 -2.91 -0.02 3.82 16 33 H 0.11 2.39 7.66 -2.39 -0.02 2.37 16 34 H 0.10 2.28 7.66 -2.39 -0.02 2.26 16 35 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.52 8.00 -2.39 -0.02 0.50 16 37 H 0.14 -0.11 8.14 -2.38 -0.02 -0.13 16 38 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -70.06 358.84 1.37 -68.69 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.30 Total: 21.60 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.08 Total: -12.18 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -5.92 Total: -114.85 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.12 Total: -8.15 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -70.06 1.37 -68.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819451539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.109 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds