Wall clock time and date at job start Tue Mar 31 2020 11:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38279 * 119.92705 * 2 1 4 4 C 1.38109 * 120.07302 * 179.97438 * 3 2 1 5 5 C 1.38890 * 119.92729 * 0.02562 * 4 3 2 6 6 N 1.39844 * 120.07535 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00347 * 172.77072 * 6 5 4 8 8 C 1.50702 * 109.47253 * 263.52224 * 7 6 5 9 9 H 1.08005 * 120.00184 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00429 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99963 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00526 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46846 * 60.00096 * 12 10 8 14 14 H 1.48496 * 109.47575 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47085 * 300.00339 * 12 10 8 16 16 C 1.34782 * 120.00050 * 352.77369 * 6 5 4 17 17 O 1.21583 * 119.99734 * 3.45235 * 16 6 5 18 18 C 1.47686 * 120.00082 * 183.45247 * 16 6 5 19 19 C 1.41077 * 125.98350 * 174.68331 * 18 16 6 20 20 C 1.35586 * 107.79940 * 180.12278 * 19 18 16 21 21 O 1.35767 * 126.08127 * 179.90670 * 20 19 18 22 22 N 1.35848 * 107.83317 * 359.65017 * 20 19 18 23 23 C 1.46498 * 125.94594 * 180.19342 * 22 20 19 24 24 N 1.31870 * 125.98367 * 354.41006 * 18 16 6 25 25 C 1.38889 * 119.85166 * 0.27705 * 5 4 3 26 26 C 1.38109 * 119.92790 * 359.42425 * 25 5 4 27 27 H 1.08996 * 109.47235 * 89.99435 * 1 2 3 28 28 H 1.08998 * 109.47151 * 209.99735 * 1 2 3 29 29 H 1.09001 * 109.47011 * 329.99897 * 1 2 3 30 30 H 1.08008 * 119.96597 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03678 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47058 * 23.51866 * 7 6 5 33 33 H 1.08998 * 109.47686 * 143.52114 * 7 6 5 34 34 H 0.97000 * 120.00289 * 180.02562 * 11 10 8 35 35 H 1.08004 * 126.09707 * 359.97438 * 19 18 16 36 36 H 0.96696 * 113.99921 * 269.69339 * 21 20 19 37 37 H 1.09001 * 109.47388 * 89.99249 * 23 22 20 38 38 H 1.09006 * 109.46970 * 209.99366 * 23 22 20 39 39 H 1.09002 * 109.47044 * 329.99100 * 23 22 20 40 40 H 1.08004 * 120.03516 * 179.72411 * 25 5 4 41 41 H 1.08002 * 119.96077 * 180.30325 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6724 -0.0001 0.0005 7 6 6.4049 -1.2586 0.1602 8 6 6.7949 -1.4331 1.6054 9 1 6.5239 -0.6817 2.3324 10 6 7.4969 -2.5523 1.9998 11 7 7.8266 -3.4675 1.1147 12 14 7.9797 -2.7689 3.7912 13 1 6.7570 -2.7971 4.6334 14 1 8.7223 -4.0446 3.9531 15 1 8.8441 -1.6368 4.2113 16 6 6.3464 1.1579 -0.1463 17 8 5.7401 2.2095 -0.2157 18 6 7.8212 1.1493 -0.2229 19 6 8.6444 2.2658 -0.4799 20 6 9.9323 1.8422 -0.4701 21 8 11.0296 2.6141 -0.6786 22 7 9.9298 0.5091 -0.2088 23 6 11.1126 -0.3489 -0.1037 24 7 8.5995 0.0976 -0.0579 25 6 3.5780 -1.2019 -0.0058 26 6 2.1969 -1.1984 -0.0001 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1383 0.0010 32 1 5.7705 -2.0898 -0.1478 33 1 7.3022 -1.2379 -0.4583 34 1 8.3201 -4.2551 1.3922 35 1 8.3084 3.2771 -0.6558 36 1 11.3023 2.6681 -1.6047 37 1 11.4598 -0.3643 0.9294 38 1 10.8560 -1.3613 -0.4160 39 1 11.9021 0.0404 -0.7466 40 1 4.1162 -2.1383 -0.0103 41 1 1.6551 -2.1327 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824375601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:05 Heat of formation + Delta-G solvation = 63.993334 kcal Electronic energy + Delta-G solvation = -26338.872362 eV Core-core repulsion = 22608.498736 eV Total energy + Delta-G solvation = -3730.373626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12120 -39.92836 -37.95420 -37.03824 -35.39962 -33.06708 -32.64948 -31.29918 -30.34553 -28.98487 -27.45923 -27.19241 -25.71332 -23.54608 -22.73267 -21.82151 -21.04138 -20.49126 -19.12820 -17.98976 -16.78007 -16.60069 -16.19332 -16.04593 -15.05820 -14.96908 -14.51159 -14.44764 -14.27440 -14.02161 -13.94169 -13.45573 -13.36378 -12.93800 -12.81731 -12.50272 -12.43120 -12.17899 -11.91464 -11.75404 -11.66210 -11.38173 -11.27235 -11.00561 -10.83549 -10.52806 -10.21363 -9.98994 -9.74643 -9.04228 -8.93639 -8.84577 -8.46586 -8.32805 -8.29176 -7.08464 -6.11407 -4.13850 1.59722 1.98977 2.02977 2.44050 2.56876 3.26624 3.29606 3.34737 3.53772 3.86028 4.15844 4.37123 4.50715 4.69272 5.11479 5.23564 5.32888 5.36377 5.42795 5.57761 5.61667 5.69761 5.78827 5.79747 5.82741 5.99604 6.02734 6.11823 6.24172 6.30234 6.53749 6.61048 6.66832 6.83798 6.97406 7.01826 7.17584 7.28370 7.42063 7.62623 7.78497 7.83187 7.90587 8.08374 8.11493 8.71863 8.87752 9.48799 10.96208 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.005361 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.654032 B = 5221.651202 C = 7173.570427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.105 4.105 4 C -0.174 4.174 5 C 0.167 3.833 6 N -0.521 5.521 7 C 0.219 3.781 8 C -0.514 4.514 9 H 0.055 0.945 10 C 0.074 3.926 11 N -0.889 5.889 12 Si 0.890 3.110 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.278 1.278 16 C 0.600 3.400 17 O -0.534 6.534 18 C 0.026 3.974 19 C -0.224 4.224 20 C 0.233 3.767 21 O -0.466 6.466 22 N -0.378 5.378 23 C 0.101 3.899 24 N -0.150 5.150 25 C -0.143 4.143 26 C -0.102 4.102 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.179 0.821 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.262 0.738 35 H 0.158 0.842 36 H 0.392 0.608 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 6.057 -6.166 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.132 4.132 3 C -0.124 4.124 4 C -0.193 4.193 5 C 0.071 3.929 6 N -0.239 5.239 7 C 0.101 3.899 8 C -0.553 4.553 9 H 0.073 0.927 10 C -0.128 4.128 11 N -0.528 5.528 12 Si 0.718 3.282 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.204 1.204 16 C 0.389 3.611 17 O -0.413 6.413 18 C -0.140 4.140 19 C -0.255 4.255 20 C 0.066 3.934 21 O -0.268 6.268 22 N -0.173 5.173 23 C -0.040 4.040 24 N 0.020 4.980 25 C -0.163 4.163 26 C -0.121 4.121 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.196 0.804 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.176 0.824 36 H 0.248 0.752 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.456 5.267 -5.388 7.548 hybrid contribution 0.686 0.310 0.559 0.937 sum 1.141 5.577 -4.829 7.465 Atomic orbital electron populations 1.20661 0.92066 1.01938 1.01403 1.19782 0.95440 0.93520 1.04450 1.20899 0.93939 0.96820 1.00738 1.22711 0.94354 1.00217 1.02046 1.18027 0.82442 0.94385 0.98067 1.45907 1.04216 1.10419 1.63351 1.20156 0.92465 0.78337 0.98964 1.21144 1.35636 1.05914 0.92595 0.92688 1.24723 0.95374 0.95500 0.97233 1.69911 1.39397 1.10065 1.33454 0.86690 0.78851 0.77225 0.85479 1.20165 1.21170 1.20410 1.17080 0.84509 0.83119 0.76369 1.90349 1.66740 1.32013 1.52175 1.21639 0.94141 0.92434 1.05780 1.20956 0.89468 1.00457 1.14575 1.18714 0.87358 0.82549 1.04734 1.84901 1.43988 1.65558 1.32394 1.49766 1.07260 1.05823 1.54422 1.21817 0.83365 0.95710 1.03124 1.78930 0.84171 1.18244 1.16652 1.21071 0.94104 0.97488 1.03671 1.20706 0.93347 0.97107 1.00905 0.92078 0.92207 0.92255 0.86712 0.80446 0.93653 0.90753 0.92787 0.82407 0.75219 0.90676 0.88437 0.90201 0.84657 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.13 -2.08 5.88 -104.59 -0.62 -2.69 16 3 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 4 C -0.17 -3.45 9.04 -39.39 -0.36 -3.81 16 5 C 0.17 3.56 6.49 -83.72 -0.54 3.02 16 6 N -0.52 -11.87 2.70 -115.85 -0.31 -12.19 16 7 C 0.22 5.37 4.50 -5.20 -0.02 5.34 16 8 C -0.51 -13.68 8.37 -34.44 -0.29 -13.97 16 9 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 10 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 11 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 12 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.60 13.37 7.57 -12.40 -0.09 13.27 16 17 O -0.53 -11.84 13.30 5.29 0.07 -11.77 16 18 C 0.03 0.55 6.78 -82.92 -0.56 -0.01 16 19 C -0.22 -3.95 10.60 -39.45 -0.42 -4.37 16 20 C 0.23 3.67 7.97 -16.72 -0.13 3.54 16 21 O -0.47 -5.52 13.58 -19.01 -0.26 -5.78 16 22 N -0.38 -6.56 4.04 -68.18 -0.28 -6.83 16 23 C 0.10 1.34 11.42 59.85 0.68 2.02 16 24 N -0.15 -3.21 8.33 33.34 0.28 -2.93 16 25 C -0.14 -2.84 9.29 -39.39 -0.37 -3.20 16 26 C -0.10 -1.73 9.69 -39.61 -0.38 -2.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.18 3.69 4.54 -56.18 -0.26 3.43 16 32 H 0.05 1.14 5.67 -51.93 -0.29 0.85 16 33 H 0.08 1.89 5.35 -51.93 -0.28 1.61 16 34 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.16 2.50 8.06 -52.48 -0.42 2.08 16 36 H 0.39 2.44 9.06 45.56 0.41 2.86 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.14 2.77 5.90 -52.48 -0.31 2.46 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -31.59 348.41 -6.82 -38.42 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.07 Total: 7.17 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -3.22 Total: -4.15 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.43 Total: -45.20 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.19 Total: -17.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.59 -6.82 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824375601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.409 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds