Wall clock time and date at job start Tue Mar 31 2020 11:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38279 * 119.92705 * 2 1 4 4 C 1.38109 * 120.07302 * 179.97438 * 3 2 1 5 5 C 1.38890 * 119.92729 * 0.02562 * 4 3 2 6 6 N 1.39844 * 120.07535 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00347 * 172.77072 * 6 5 4 8 8 C 1.50702 * 109.47253 * 263.52224 * 7 6 5 9 9 H 1.08005 * 120.00184 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00429 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99963 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00526 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46846 * 60.00096 * 12 10 8 14 14 H 1.48496 * 109.47575 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47085 * 300.00339 * 12 10 8 16 16 C 1.34782 * 120.00050 * 352.77369 * 6 5 4 17 17 O 1.21583 * 119.99734 * 3.45235 * 16 6 5 18 18 C 1.47686 * 120.00082 * 183.45247 * 16 6 5 19 19 C 1.41077 * 125.98350 * 174.68331 * 18 16 6 20 20 C 1.35586 * 107.79940 * 180.12278 * 19 18 16 21 21 O 1.35767 * 126.08127 * 179.90670 * 20 19 18 22 22 N 1.35848 * 107.83317 * 359.65017 * 20 19 18 23 23 C 1.46498 * 125.94594 * 180.19342 * 22 20 19 24 24 N 1.31870 * 125.98367 * 354.41006 * 18 16 6 25 25 C 1.38889 * 119.85166 * 0.27705 * 5 4 3 26 26 C 1.38109 * 119.92790 * 359.42425 * 25 5 4 27 27 H 1.08996 * 109.47235 * 89.99435 * 1 2 3 28 28 H 1.08998 * 109.47151 * 209.99735 * 1 2 3 29 29 H 1.09001 * 109.47011 * 329.99897 * 1 2 3 30 30 H 1.08008 * 119.96597 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.03678 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47058 * 23.51866 * 7 6 5 33 33 H 1.08998 * 109.47686 * 143.52114 * 7 6 5 34 34 H 0.97000 * 120.00289 * 180.02562 * 11 10 8 35 35 H 1.08004 * 126.09707 * 359.97438 * 19 18 16 36 36 H 0.96696 * 113.99921 * 269.69339 * 21 20 19 37 37 H 1.09001 * 109.47388 * 89.99249 * 23 22 20 38 38 H 1.09006 * 109.46970 * 209.99366 * 23 22 20 39 39 H 1.09002 * 109.47044 * 329.99100 * 23 22 20 40 40 H 1.08004 * 120.03516 * 179.72411 * 25 5 4 41 41 H 1.08002 * 119.96077 * 180.30325 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6724 -0.0001 0.0005 7 6 6.4049 -1.2586 0.1602 8 6 6.7949 -1.4331 1.6054 9 1 6.5239 -0.6817 2.3324 10 6 7.4969 -2.5523 1.9998 11 7 7.8266 -3.4675 1.1147 12 14 7.9797 -2.7689 3.7912 13 1 6.7570 -2.7971 4.6334 14 1 8.7223 -4.0446 3.9531 15 1 8.8441 -1.6368 4.2113 16 6 6.3464 1.1579 -0.1463 17 8 5.7401 2.2095 -0.2157 18 6 7.8212 1.1493 -0.2229 19 6 8.6444 2.2658 -0.4799 20 6 9.9323 1.8422 -0.4701 21 8 11.0296 2.6141 -0.6786 22 7 9.9298 0.5091 -0.2088 23 6 11.1126 -0.3489 -0.1037 24 7 8.5995 0.0976 -0.0579 25 6 3.5780 -1.2019 -0.0058 26 6 2.1969 -1.1984 -0.0001 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1383 0.0010 32 1 5.7705 -2.0898 -0.1478 33 1 7.3022 -1.2379 -0.4583 34 1 8.3201 -4.2551 1.3922 35 1 8.3084 3.2771 -0.6558 36 1 11.3023 2.6681 -1.6047 37 1 11.4598 -0.3643 0.9294 38 1 10.8560 -1.3613 -0.4160 39 1 11.9021 0.0404 -0.7466 40 1 4.1162 -2.1383 -0.0103 41 1 1.6551 -2.1327 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824375601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:04 Heat of formation + Delta-G solvation = 42.657542 kcal Electronic energy + Delta-G solvation = -26339.797551 eV Core-core repulsion = 22608.498736 eV Total energy + Delta-G solvation = -3731.298815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54032 -41.45576 -39.39974 -38.16764 -37.08733 -34.68808 -34.28130 -32.68199 -31.79231 -30.33056 -29.32645 -28.51014 -26.98854 -25.40311 -24.17363 -23.32358 -22.30909 -21.92000 -20.57170 -19.31158 -18.68853 -18.29358 -17.58664 -17.48072 -16.53504 -16.48133 -16.29079 -15.98546 -15.67230 -15.25859 -15.17319 -14.87128 -14.54749 -14.48611 -14.28892 -14.23097 -13.54782 -13.52504 -13.40000 -13.14055 -12.93057 -12.91221 -12.78718 -12.61400 -12.49871 -12.18292 -11.90227 -11.82333 -11.27804 -10.72450 -10.55749 -10.41003 -10.29647 -9.77386 -9.66165 -8.66046 -8.13795 -6.23817 0.08679 0.57838 0.65813 1.05079 1.27952 1.35472 1.36622 1.44104 1.97947 2.27867 2.41360 2.93849 3.02220 3.16237 3.38280 3.80670 4.06270 4.13418 4.28480 4.37783 4.40836 4.44920 4.54541 4.56104 4.61418 4.68846 4.74023 4.89753 4.96026 5.00179 5.15804 5.22166 5.30393 5.40005 5.48166 5.56713 5.67681 5.76275 5.77784 5.85738 6.06867 6.31523 6.34868 6.44697 6.67863 6.79679 7.07373 7.40859 8.91540 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.005361 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.654032 B = 5221.651202 C = 7173.570427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.188 4.188 5 C 0.129 3.871 6 N -0.529 5.529 7 C 0.238 3.762 8 C -0.520 4.520 9 H 0.031 0.969 10 C 0.041 3.959 11 N -0.908 5.908 12 Si 0.940 3.060 13 H -0.278 1.278 14 H -0.272 1.272 15 H -0.282 1.282 16 C 0.590 3.410 17 O -0.544 6.544 18 C 0.004 3.996 19 C -0.240 4.240 20 C 0.263 3.737 21 O -0.456 6.456 22 N -0.377 5.377 23 C 0.093 3.907 24 N -0.198 5.198 25 C -0.161 4.161 26 C -0.101 4.101 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.031 0.969 33 H 0.067 0.933 34 H 0.266 0.734 35 H 0.171 0.829 36 H 0.423 0.577 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 6.704 -6.187 9.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.208 4.208 5 C 0.034 3.966 6 N -0.247 5.247 7 C 0.118 3.882 8 C -0.558 4.558 9 H 0.049 0.951 10 C -0.160 4.160 11 N -0.547 5.547 12 Si 0.767 3.233 13 H -0.204 1.204 14 H -0.197 1.197 15 H -0.208 1.208 16 C 0.380 3.620 17 O -0.423 6.423 18 C -0.161 4.161 19 C -0.271 4.271 20 C 0.095 3.905 21 O -0.263 6.263 22 N -0.172 5.172 23 C -0.047 4.047 24 N -0.029 5.029 25 C -0.181 4.181 26 C -0.119 4.119 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.163 0.837 31 H 0.183 0.817 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.188 0.812 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.136 0.864 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.170 5.914 -5.436 8.034 hybrid contribution 0.803 0.173 0.512 0.968 sum 0.973 6.087 -4.924 7.889 Atomic orbital electron populations 1.20743 0.88496 1.03525 1.03033 1.20275 0.97889 0.92410 1.01530 1.21258 0.92756 0.98797 0.99400 1.22676 0.95836 0.99065 1.03209 1.18385 0.82043 0.95680 1.00466 1.45855 1.05003 1.09927 1.63917 1.19755 0.91936 0.78821 0.97673 1.21118 1.36041 1.05549 0.93128 0.95101 1.25255 0.95226 0.95183 1.00321 1.69978 1.39670 1.10321 1.34726 0.85902 0.78377 0.77422 0.81621 1.20373 1.19710 1.20762 1.17420 0.85445 0.82941 0.76230 1.90328 1.67251 1.31949 1.52803 1.21672 0.93625 0.93803 1.06965 1.21135 0.89922 1.00341 1.15676 1.18559 0.87756 0.82046 1.02112 1.84865 1.42028 1.64250 1.35170 1.50012 1.06873 1.06965 1.53388 1.22161 0.82972 0.95184 1.04400 1.78780 0.86123 1.19356 1.18674 1.21093 0.95580 0.96288 1.05126 1.21067 0.92134 0.99084 0.99650 0.90244 0.90771 0.90631 0.83660 0.81741 0.95160 0.91567 0.92460 0.81155 0.71658 0.90471 0.89540 0.85508 0.86426 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.12 -3.55 5.88 -19.84 -0.12 -3.66 16 3 C -0.10 -3.37 9.69 22.25 0.22 -3.16 16 4 C -0.19 -7.68 9.04 22.40 0.20 -7.48 16 5 C 0.13 5.80 6.49 38.17 0.25 6.05 16 6 N -0.53 -25.68 2.70 -638.70 -1.72 -27.40 16 7 C 0.24 12.37 4.50 85.63 0.39 12.76 16 8 C -0.52 -28.95 8.37 25.60 0.21 -28.73 16 9 H 0.03 1.83 7.81 -2.91 -0.02 1.81 16 10 C 0.04 2.22 5.46 84.65 0.46 2.68 16 11 N -0.91 -49.98 13.29 21.45 0.28 -49.69 16 12 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 C 0.59 27.84 7.57 86.74 0.66 28.49 16 17 O -0.54 -25.36 13.30 -3.98 -0.05 -25.41 16 18 C 0.00 0.18 6.78 42.33 0.29 0.46 16 19 C -0.24 -8.49 10.60 22.35 0.24 -8.25 16 20 C 0.26 7.91 7.97 83.46 0.67 8.58 16 21 O -0.46 -9.28 13.58 -90.94 -1.23 -10.51 16 22 N -0.38 -12.89 4.04 -480.56 -1.94 -14.82 16 23 C 0.09 2.32 11.42 127.77 1.46 3.78 16 24 N -0.20 -8.78 8.33 -48.44 -0.40 -9.19 16 25 C -0.16 -6.62 9.29 22.40 0.21 -6.41 16 26 C -0.10 -3.33 9.69 22.25 0.22 -3.11 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 29 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.17 7.14 4.54 -61.39 -0.28 6.86 16 32 H 0.03 1.64 5.67 -2.39 -0.01 1.63 16 33 H 0.07 3.58 5.35 -2.39 -0.01 3.57 16 34 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.17 5.37 8.06 -2.91 -0.02 5.35 16 36 H 0.42 3.50 9.06 -74.06 -0.67 2.83 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.12 5.17 5.90 -2.91 -0.02 5.15 16 41 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -71.76 348.41 3.16 -68.60 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.15 Total: 21.93 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.05 Total: 0.69 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -3.78 Total: -101.10 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.29 Total: -35.92 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.76 3.16 -68.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824375601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.257 kcal (2) G-P(sol) polarization free energy of solvation -71.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds