Wall clock time and date at job start Tue Mar 31 2020 10:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21556 * 120.00362 * 0.02562 * 14 13 12 16 16 C 1.47795 * 119.99651 * 179.97438 * 14 13 12 17 17 N 1.32811 * 120.06937 * 359.73403 * 16 14 13 18 18 C 1.31681 * 122.00801 * 179.74163 * 17 16 14 19 19 C 1.38393 * 121.69642 * 0.51498 * 18 17 16 20 20 C 1.38854 * 119.13856 * 359.75869 * 19 18 17 21 21 O 1.34434 * 134.63992 * 179.97438 * 20 19 18 22 22 C 1.34445 * 110.85326 * 180.02562 * 21 20 19 23 23 C 1.34309 * 110.16776 * 359.97438 * 22 21 20 24 24 C 1.40196 * 120.07142 * 179.97438 * 16 14 13 25 25 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 26 26 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 29 29 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 30 30 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 31 31 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 32 32 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 33 33 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 34 34 H 1.07994 * 119.14968 * 180.27088 * 18 17 16 35 35 H 1.08004 * 120.42804 * 179.73476 * 19 18 17 36 36 H 1.07996 * 124.91907 * 179.97438 * 22 21 20 37 37 H 1.08005 * 126.89575 * 180.02562 * 23 22 21 38 38 H 1.09003 * 109.49897 * 178.74799 * 25 12 11 39 39 H 1.09004 * 109.50093 * 58.65268 * 25 12 11 40 40 H 1.09001 * 109.58688 * 246.20238 * 26 9 7 41 41 H 1.08996 * 109.58570 * 6.47946 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1362 -6.0453 3.1279 16 6 0.2248 -7.2251 4.6159 17 7 1.4606 -7.4759 5.0326 18 6 1.7088 -8.3161 6.0157 19 6 0.6931 -8.9954 6.6654 20 6 -0.6218 -8.7815 6.2737 21 8 -1.8150 -9.2560 6.6715 22 6 -2.8106 -8.7155 5.9475 23 6 -2.3117 -7.8597 5.0406 24 6 -0.8610 -7.8726 5.2220 25 6 2.0675 -4.6173 0.9650 26 6 1.8138 -3.6528 -0.1979 27 1 -0.4850 0.8400 -0.0004 28 1 0.0995 -1.3342 1.6688 29 1 -0.6774 -2.6380 0.7364 30 1 1.3429 -2.9691 3.0021 31 1 -0.3879 -3.3839 3.0520 32 1 -0.0281 -5.0406 1.2310 33 1 1.9426 -5.8267 3.2372 34 1 2.7315 -8.4822 6.3201 35 1 0.9203 -9.6832 7.4666 36 1 -3.8596 -8.9374 6.0764 37 1 -2.8700 -7.2784 4.3216 38 1 2.3043 -5.6062 0.5724 39 1 2.9025 -4.2536 1.5638 40 1 1.0401 -4.0605 -0.8485 41 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826749184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:11 Heat of formation + Delta-G solvation = 30.539632 kcal Electronic energy + Delta-G solvation = -25619.312164 eV Core-core repulsion = 21887.487876 eV Total energy + Delta-G solvation = -3731.824287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98265 -40.07289 -38.79648 -37.24647 -34.46295 -33.18014 -32.49994 -31.75749 -30.30827 -29.90816 -29.27718 -25.67214 -24.60522 -23.35640 -22.67119 -22.21096 -21.59801 -20.33828 -19.38214 -18.21596 -18.02662 -17.08209 -16.65544 -16.62304 -15.84460 -15.58755 -14.93093 -14.80010 -14.58278 -14.24516 -13.81918 -13.58173 -13.47168 -13.38701 -13.15283 -12.96703 -12.52334 -12.37772 -12.13136 -11.47047 -11.12265 -10.92549 -10.72232 -10.62986 -10.42605 -10.33760 -10.19491 -10.03375 -9.87290 -9.78534 -9.73724 -9.48024 -8.78800 -8.59429 -8.39470 -6.66163 -5.76489 -3.19522 0.05851 0.84679 1.99746 2.27684 2.68657 3.16165 3.39084 3.46761 3.48903 3.66514 3.89549 4.14917 4.22648 4.51438 4.59450 4.70843 4.87621 5.05950 5.31395 5.37638 5.42150 5.43680 5.48870 5.57662 5.65251 5.86218 5.93714 6.05907 6.11367 6.27534 6.36998 6.46880 6.60648 6.62591 6.68254 6.79580 6.92505 6.96218 7.36450 7.39943 7.69844 7.77819 7.82175 8.33515 8.47359 9.23170 9.86483 10.43266 11.32084 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.002748 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.834564 B =10188.264156 C =10566.307546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.149 3.851 13 N -0.700 5.700 14 C 0.565 3.435 15 O -0.527 6.527 16 C 0.143 3.857 17 N -0.463 5.463 18 C 0.110 3.890 19 C -0.140 4.140 20 C 0.079 3.921 21 O -0.189 6.189 22 C 0.001 3.999 23 C -0.172 4.172 24 C -0.135 4.135 25 C -0.139 4.139 26 C 0.149 3.851 27 H 0.253 0.747 28 H 0.089 0.911 29 H 0.021 0.979 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.406 0.594 34 H 0.175 0.825 35 H 0.148 0.852 36 H 0.216 0.784 37 H 0.175 0.825 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.020 0.980 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -20.146 13.933 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.046 3.954 13 N -0.350 5.350 14 C 0.349 3.651 15 O -0.403 6.403 16 C 0.000 4.000 17 N -0.177 5.177 18 C -0.044 4.044 19 C -0.161 4.161 20 C 0.024 3.976 21 O -0.089 6.089 22 C -0.064 4.064 23 C -0.192 4.192 24 C -0.139 4.139 25 C -0.179 4.179 26 C 0.022 3.978 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.241 0.759 34 H 0.192 0.808 35 H 0.166 0.834 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.572 -19.591 13.429 23.759 hybrid contribution 0.054 0.370 0.620 0.724 sum -0.518 -19.222 14.049 23.814 Atomic orbital electron populations 1.70044 1.05263 1.25414 1.53831 1.25065 0.95285 0.98454 1.00867 0.86235 0.79354 0.83992 0.77252 1.20253 1.21739 1.21587 1.19215 0.92562 0.84769 1.41704 0.91592 1.44110 1.35916 1.01559 1.49971 1.20748 0.88693 0.98040 0.87744 1.22579 1.00548 0.95025 1.00530 1.21140 0.98975 0.88617 0.86664 1.46196 1.09538 1.43087 1.36131 1.17666 0.85444 0.80358 0.81658 1.90778 1.22342 1.64105 1.63106 1.20911 0.87442 0.95841 0.95815 1.67684 1.21091 1.15697 1.13183 1.22603 0.99347 0.91475 0.90979 1.21182 0.87600 1.03784 1.03499 1.19723 0.87189 0.95432 0.95218 1.83971 1.12955 1.58428 1.53571 1.24292 0.92859 0.96342 0.92859 1.22776 0.91505 1.02441 1.02513 1.20663 0.95343 0.99608 0.98294 1.22334 0.96649 0.99836 0.99039 1.20839 0.98029 0.86683 0.92277 0.93655 0.89266 0.96105 0.92564 0.92806 0.89871 0.75881 0.80782 0.83413 0.76736 0.80731 0.92506 0.91682 0.96187 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.20 55.49 0.62 -25.81 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.91 3.00 -172.33 -0.52 -15.43 16 10 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 11 C -0.15 -2.99 5.66 -26.60 -0.15 -3.14 16 12 C 0.15 2.68 2.41 -67.87 -0.16 2.51 16 13 N -0.70 -10.92 5.07 -54.71 -0.28 -11.20 16 14 C 0.57 9.28 7.76 -12.35 -0.10 9.19 16 15 O -0.53 -9.99 14.87 5.32 0.08 -9.91 16 16 C 0.14 2.03 6.78 -82.80 -0.56 1.47 16 17 N -0.46 -5.59 9.55 -9.68 -0.09 -5.68 16 18 C 0.11 0.96 11.13 -17.56 -0.20 0.76 16 19 C -0.14 -1.17 10.13 -39.30 -0.40 -1.57 16 20 C 0.08 0.87 7.48 -38.29 -0.29 0.58 16 21 O -0.19 -1.90 10.57 4.96 0.05 -1.85 16 22 C 0.00 0.00 11.97 29.35 0.35 0.36 16 23 C -0.17 -1.99 10.31 -37.77 -0.39 -2.38 16 24 C -0.13 -1.78 6.16 -104.90 -0.65 -2.42 16 25 C -0.14 -2.37 5.55 -26.62 -0.15 -2.52 16 26 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 33 H 0.41 5.57 7.94 -40.82 -0.32 5.25 16 34 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 36 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.18 2.08 7.29 -52.48 -0.38 1.70 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -33.15 342.85 -8.13 -41.28 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.18 Total: 3.65 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.96 Total: 3.05 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.26 Total: -58.12 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.13 Total: -11.76 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.15 -8.13 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826749184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.825 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds