Wall clock time and date at job start Tue Mar 31 2020 10:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00020 * 2 1 4 4 H 1.48503 * 109.47482 * 240.00518 * 3 2 1 5 5 H 1.48500 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46919 * 120.00568 * 3 2 1 7 7 C 1.37878 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99872 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00058 * 169.99967 * 10 9 7 12 12 C 1.53237 * 109.33943 * 187.25318 * 11 10 9 13 13 N 1.47084 * 108.52197 * 306.16397 * 12 11 10 14 14 C 1.34769 * 120.88373 * 231.18713 * 13 12 11 15 15 O 1.21561 * 119.99973 * 183.83494 * 14 13 12 16 16 C 1.47789 * 120.00238 * 3.84211 * 14 13 12 17 17 N 1.32821 * 120.06663 * 321.72589 * 16 14 13 18 18 C 1.31675 * 122.01034 * 180.02562 * 17 16 14 19 19 C 1.38391 * 121.70070 * 359.76506 * 18 17 16 20 20 C 1.38868 * 119.13255 * 359.97438 * 19 18 17 21 21 O 1.34429 * 134.63352 * 179.97438 * 20 19 18 22 22 C 1.34451 * 110.85290 * 180.02562 * 21 20 19 23 23 C 1.34314 * 110.16049 * 0.02562 * 22 21 20 24 24 C 1.40194 * 120.07533 * 141.30143 * 16 14 13 25 25 C 1.47082 * 118.23107 * 51.46285 * 13 12 11 26 26 C 1.46900 * 110.99897 * 294.29815 * 10 9 7 27 27 H 0.96990 * 119.99690 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47492 * 60.00025 * 9 7 2 29 29 H 1.09004 * 109.47126 * 299.99633 * 9 7 2 30 30 H 1.08993 * 109.49729 * 67.28982 * 11 10 9 31 31 H 1.09003 * 109.51403 * 307.22294 * 11 10 9 32 32 H 1.09003 * 109.63029 * 186.45454 * 12 11 10 33 33 H 1.09000 * 109.63699 * 65.87630 * 12 11 10 34 34 H 1.07993 * 119.15292 * 179.78226 * 18 17 16 35 35 H 1.07996 * 120.43903 * 180.02562 * 19 18 17 36 36 H 1.07996 * 124.91688 * 180.02562 * 22 21 20 37 37 H 1.08006 * 126.88922 * 180.02562 * 23 22 21 38 38 H 1.08994 * 109.63064 * 68.25059 * 25 13 12 39 39 H 1.09001 * 109.62167 * 188.83654 * 25 13 12 40 40 H 1.09005 * 109.49282 * 292.70791 * 26 10 9 41 41 H 1.09002 * 109.49350 * 52.78491 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8935 0.2376 12 6 2.5637 -6.0032 0.4104 13 7 3.4615 -5.9863 -0.7546 14 6 3.7117 -7.1124 -1.4514 15 8 4.5098 -7.0951 -2.3682 16 6 3.0158 -8.3683 -1.1011 17 7 2.7878 -8.6698 0.1722 18 6 2.1719 -9.7781 0.5275 19 6 1.7217 -10.6921 -0.4090 20 6 1.9244 -10.4332 -1.7582 21 8 1.6285 -11.0801 -2.8988 22 6 2.0544 -10.3846 -3.9678 23 6 2.6506 -9.2477 -3.5727 24 6 2.5871 -9.2396 -2.1123 25 6 4.0837 -4.7090 -1.1350 26 6 2.9766 -3.6491 -1.2505 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5568 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 0.8795 -5.1264 -0.6121 31 1 0.9157 -4.8194 1.1410 32 1 2.0632 -6.9694 0.4729 33 1 3.1395 -5.8266 1.3189 34 1 2.0138 -9.9788 1.5768 35 1 1.2185 -11.5946 -0.0948 36 1 1.9344 -10.6951 -4.9951 37 1 3.0888 -8.4912 -4.2070 38 1 4.8026 -4.4104 -0.3722 39 1 4.5883 -4.8193 -2.0949 40 1 2.3147 -3.8993 -2.0796 41 1 3.4271 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827478101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:08 Heat of formation + Delta-G solvation = 35.744360 kcal Electronic energy + Delta-G solvation = -25937.440919 eV Core-core repulsion = 22205.842325 eV Total energy + Delta-G solvation = -3731.598593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.01350 -40.34092 -38.82780 -37.46300 -34.44586 -33.27032 -32.51457 -32.09904 -30.73290 -30.07272 -28.24675 -25.84767 -24.84655 -23.57664 -23.18053 -22.45052 -21.80060 -20.63069 -19.12879 -18.25955 -17.83233 -16.89897 -16.63919 -16.37977 -15.97816 -15.68236 -15.23181 -14.81886 -14.65285 -14.35669 -14.10487 -13.73413 -13.68510 -13.54074 -13.49358 -13.19173 -12.70565 -12.20432 -12.14820 -11.89175 -11.25693 -11.11739 -10.85773 -10.73991 -10.69895 -10.62943 -10.52949 -10.36224 -9.90812 -9.79981 -9.52952 -9.22648 -8.72154 -8.48532 -8.40531 -7.30968 -6.05160 -4.07026 0.10681 0.84085 1.95056 2.25804 2.58358 2.95307 3.32809 3.36886 3.39768 3.43237 3.91685 4.02758 4.21477 4.40672 4.52306 4.67092 4.84881 4.86363 4.96979 5.30261 5.32936 5.35357 5.38066 5.46259 5.53597 5.67416 5.69662 5.85682 5.87780 5.92790 6.00813 6.20210 6.27692 6.45383 6.53292 6.58599 6.71829 7.23471 7.28783 7.38914 7.51082 7.75686 8.02648 8.12384 8.14890 8.49155 9.00056 9.57471 11.05684 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002937 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.066273 B = 9530.564221 C = 9749.014819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.038 3.962 12 C 0.106 3.894 13 N -0.584 5.584 14 C 0.570 3.430 15 O -0.537 6.537 16 C 0.150 3.850 17 N -0.456 5.456 18 C 0.108 3.892 19 C -0.141 4.141 20 C 0.083 3.917 21 O -0.188 6.188 22 C 0.006 3.994 23 C -0.179 4.179 24 C -0.140 4.140 25 C 0.114 3.886 26 C 0.052 3.948 27 H 0.262 0.738 28 H -0.010 1.010 29 H 0.032 0.968 30 H 0.023 0.977 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.177 0.823 35 H 0.149 0.851 36 H 0.216 0.784 37 H 0.169 0.831 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.024 0.976 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 -23.087 -3.160 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.092 4.092 12 C -0.016 4.016 13 N -0.316 5.316 14 C 0.355 3.645 15 O -0.414 6.414 16 C 0.007 3.993 17 N -0.169 5.169 18 C -0.045 4.045 19 C -0.161 4.161 20 C 0.028 3.972 21 O -0.088 6.088 22 C -0.058 4.058 23 C -0.199 4.199 24 C -0.144 4.144 25 C -0.008 4.008 26 C -0.077 4.077 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.194 0.806 35 H 0.167 0.833 36 H 0.233 0.767 37 H 0.186 0.814 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.301 -22.544 -2.613 22.934 hybrid contribution -0.570 0.357 -1.292 1.457 sum 2.731 -22.187 -3.906 22.693 Atomic orbital electron populations 1.69948 1.06098 1.26953 1.50809 1.24992 0.94864 0.99351 0.95347 0.86548 0.79428 0.82665 0.78699 1.20232 1.21386 1.20113 1.21114 0.93481 0.89881 1.50365 0.91803 1.19721 0.90004 0.87217 0.96158 1.62098 1.27961 1.02639 1.33330 1.22468 0.95083 0.90890 1.00717 1.22343 0.91733 1.00028 0.87545 1.48115 1.45751 1.08086 1.29606 1.17709 0.81969 0.82602 0.82198 1.90775 1.35159 1.84859 1.30619 1.20700 0.96038 0.94672 0.87907 1.67911 1.13368 1.18532 1.17119 1.22706 0.93533 0.88154 1.00098 1.21177 1.04345 1.03109 0.87498 1.19695 0.97896 0.91407 0.88204 1.83976 1.66909 1.45220 1.12688 1.24235 0.98467 0.92002 0.91099 1.22615 1.04837 1.00226 0.92264 1.20594 1.02557 0.96159 0.95065 1.22058 0.95952 0.81195 1.01586 1.22427 0.95046 0.99081 0.91172 0.92835 0.99171 0.95033 0.95916 0.90032 0.87951 0.90278 0.80596 0.83348 0.76714 0.81360 0.90403 0.89296 0.95763 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.06 8.41 -34.44 -0.29 -14.35 16 8 H 0.06 1.73 7.13 -52.48 -0.37 1.35 16 9 C 0.19 4.98 4.72 -4.98 -0.02 4.95 16 10 N -0.54 -11.35 4.62 -235.47 -1.09 -12.44 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 C 0.11 1.63 6.15 -3.60 -0.02 1.61 16 13 N -0.58 -9.63 3.00 -173.31 -0.52 -10.15 16 14 C 0.57 9.47 7.46 -12.36 -0.09 9.38 16 15 O -0.54 -9.94 15.97 5.31 0.08 -9.85 16 16 C 0.15 2.16 6.07 -82.80 -0.50 1.66 16 17 N -0.46 -5.68 7.22 -9.68 -0.07 -5.75 16 18 C 0.11 0.97 11.13 -17.56 -0.20 0.77 16 19 C -0.14 -1.20 10.13 -39.29 -0.40 -1.59 16 20 C 0.08 0.91 7.48 -38.28 -0.29 0.63 16 21 O -0.19 -1.89 10.57 4.96 0.05 -1.83 16 22 C 0.01 0.05 11.97 29.35 0.35 0.40 16 23 C -0.18 -2.01 10.66 -37.78 -0.40 -2.42 16 24 C -0.14 -1.84 6.13 -104.91 -0.64 -2.48 16 25 C 0.11 1.92 6.62 -3.36 -0.02 1.89 16 26 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 29 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 32 H 0.10 1.43 4.65 -51.93 -0.24 1.19 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.17 1.86 8.02 -52.48 -0.42 1.44 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.45 7.08 -51.93 -0.37 1.09 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -33.46 341.69 -8.44 -41.89 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.10 Total: -1.25 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.66 Total: 3.57 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.94 Total: -54.07 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.14 Total: -11.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.46 -8.44 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827478101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.636 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds