Wall clock time and date at job start Tue Mar 31 2020 10:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00020 * 2 1 4 4 H 1.48503 * 109.47482 * 240.00518 * 3 2 1 5 5 H 1.48500 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46919 * 120.00568 * 3 2 1 7 7 C 1.37878 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99872 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00171 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47088 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00058 * 169.99967 * 10 9 7 12 12 C 1.53237 * 109.33943 * 187.25318 * 11 10 9 13 13 N 1.47084 * 108.52197 * 306.16397 * 12 11 10 14 14 C 1.34769 * 120.88373 * 231.18713 * 13 12 11 15 15 O 1.21561 * 119.99973 * 183.83494 * 14 13 12 16 16 C 1.47789 * 120.00238 * 3.84211 * 14 13 12 17 17 N 1.32821 * 120.06663 * 321.72589 * 16 14 13 18 18 C 1.31675 * 122.01034 * 180.02562 * 17 16 14 19 19 C 1.38391 * 121.70070 * 359.76506 * 18 17 16 20 20 C 1.38868 * 119.13255 * 359.97438 * 19 18 17 21 21 O 1.34429 * 134.63352 * 179.97438 * 20 19 18 22 22 C 1.34451 * 110.85290 * 180.02562 * 21 20 19 23 23 C 1.34314 * 110.16049 * 0.02562 * 22 21 20 24 24 C 1.40194 * 120.07533 * 141.30143 * 16 14 13 25 25 C 1.47082 * 118.23107 * 51.46285 * 13 12 11 26 26 C 1.46900 * 110.99897 * 294.29815 * 10 9 7 27 27 H 0.96990 * 119.99690 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47492 * 60.00025 * 9 7 2 29 29 H 1.09004 * 109.47126 * 299.99633 * 9 7 2 30 30 H 1.08993 * 109.49729 * 67.28982 * 11 10 9 31 31 H 1.09003 * 109.51403 * 307.22294 * 11 10 9 32 32 H 1.09003 * 109.63029 * 186.45454 * 12 11 10 33 33 H 1.09000 * 109.63699 * 65.87630 * 12 11 10 34 34 H 1.07993 * 119.15292 * 179.78226 * 18 17 16 35 35 H 1.07996 * 120.43903 * 180.02562 * 19 18 17 36 36 H 1.07996 * 124.91688 * 180.02562 * 22 21 20 37 37 H 1.08006 * 126.88922 * 180.02562 * 23 22 21 38 38 H 1.08994 * 109.63064 * 68.25059 * 25 13 12 39 39 H 1.09001 * 109.62167 * 188.83654 * 25 13 12 40 40 H 1.09005 * 109.49282 * 292.70791 * 26 10 9 41 41 H 1.09002 * 109.49350 * 52.78491 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8935 0.2376 12 6 2.5637 -6.0032 0.4104 13 7 3.4615 -5.9863 -0.7546 14 6 3.7117 -7.1124 -1.4514 15 8 4.5098 -7.0951 -2.3682 16 6 3.0158 -8.3683 -1.1011 17 7 2.7878 -8.6698 0.1722 18 6 2.1719 -9.7781 0.5275 19 6 1.7217 -10.6921 -0.4090 20 6 1.9244 -10.4332 -1.7582 21 8 1.6285 -11.0801 -2.8988 22 6 2.0544 -10.3846 -3.9678 23 6 2.6506 -9.2477 -3.5727 24 6 2.5871 -9.2396 -2.1123 25 6 4.0837 -4.7090 -1.1350 26 6 2.9766 -3.6491 -1.2505 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5568 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 0.8795 -5.1264 -0.6121 31 1 0.9157 -4.8194 1.1410 32 1 2.0632 -6.9694 0.4729 33 1 3.1395 -5.8266 1.3189 34 1 2.0138 -9.9788 1.5768 35 1 1.2185 -11.5946 -0.0948 36 1 1.9344 -10.6951 -4.9951 37 1 3.0888 -8.4912 -4.2070 38 1 4.8026 -4.4104 -0.3722 39 1 4.5883 -4.8193 -2.0949 40 1 2.3147 -3.8993 -2.0796 41 1 3.4271 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827478101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:08 Heat of formation + Delta-G solvation = 12.621634 kcal Electronic energy + Delta-G solvation = -25938.443595 eV Core-core repulsion = 22205.842325 eV Total energy + Delta-G solvation = -3732.601270 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.78278 -41.50574 -39.84552 -38.94422 -36.06477 -34.43840 -34.06557 -33.10368 -32.04728 -31.00650 -29.95703 -27.46048 -26.03896 -24.77599 -24.10615 -23.91192 -23.17102 -21.94889 -20.37983 -19.06021 -18.88681 -18.47300 -17.91135 -17.44657 -17.20708 -16.69558 -16.61352 -16.25913 -16.03664 -15.67147 -15.38325 -15.25708 -15.12244 -14.63100 -14.44429 -14.26103 -14.04506 -13.86761 -13.43875 -13.10969 -12.96096 -12.78888 -12.57789 -12.36445 -12.35583 -12.24773 -11.77829 -11.54591 -11.41822 -11.36398 -10.71009 -10.61706 -10.43320 -9.89543 -9.43358 -9.09816 -8.20963 -6.31178 -0.73199 0.04538 1.16982 1.42585 1.45312 1.45705 1.53239 1.57463 1.75124 2.40486 2.55555 2.91509 3.11262 3.19540 3.24914 3.46481 3.74596 3.90856 3.98331 3.99671 4.13217 4.18988 4.27690 4.32289 4.39229 4.54743 4.55992 4.69717 4.77192 4.81484 4.84781 4.89340 5.00435 5.12959 5.15843 5.19997 5.29428 5.41529 5.63159 5.83527 6.01258 6.13435 6.28330 6.54665 6.57765 6.83844 6.89855 7.38601 8.90173 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002937 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.066273 B = 9530.564221 C = 9749.014819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.537 5.537 11 C 0.038 3.962 12 C 0.120 3.880 13 N -0.591 5.591 14 C 0.568 3.432 15 O -0.566 6.566 16 C 0.111 3.889 17 N -0.468 5.468 18 C 0.105 3.895 19 C -0.116 4.116 20 C 0.066 3.934 21 O -0.188 6.188 22 C 0.043 3.957 23 C -0.227 4.227 24 C -0.159 4.159 25 C 0.125 3.875 26 C 0.058 3.942 27 H 0.265 0.735 28 H -0.042 1.042 29 H 0.011 0.989 30 H 0.012 0.988 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.219 0.781 35 H 0.190 0.810 36 H 0.264 0.736 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.010 0.990 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.755 -25.305 -2.518 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.262 5.262 11 C -0.091 4.091 12 C -0.002 4.002 13 N -0.322 5.322 14 C 0.356 3.644 15 O -0.445 6.445 16 C -0.030 4.030 17 N -0.181 5.181 18 C -0.049 4.049 19 C -0.136 4.136 20 C 0.011 3.989 21 O -0.087 6.087 22 C -0.021 4.021 23 C -0.247 4.247 24 C -0.163 4.163 25 C 0.002 3.998 26 C -0.071 4.071 27 H 0.073 0.927 28 H -0.024 1.024 29 H 0.029 0.971 30 H 0.030 0.970 31 H 0.108 0.892 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.235 0.765 35 H 0.207 0.793 36 H 0.279 0.721 37 H 0.176 0.824 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.028 0.972 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.485 -24.782 -1.965 25.103 hybrid contribution -0.699 0.868 -1.519 1.884 sum 2.786 -23.914 -3.485 24.326 Atomic orbital electron populations 1.70079 1.07773 1.28007 1.51668 1.25911 0.95718 1.03204 0.94721 0.85431 0.78137 0.77852 0.79184 1.19267 1.20986 1.19163 1.21437 0.93774 0.90875 1.50238 0.91512 1.19380 0.90015 0.88768 0.93554 1.62036 1.27100 1.02980 1.34101 1.22569 0.95871 0.90076 1.00565 1.22309 0.90945 0.99646 0.87327 1.48180 1.46019 1.07955 1.30059 1.18135 0.81486 0.83367 0.81414 1.90734 1.36431 1.85559 1.31760 1.20311 0.98999 0.94486 0.89246 1.67777 1.13823 1.20344 1.16200 1.23445 0.92345 0.87000 1.02125 1.21715 1.01933 1.03765 0.86153 1.20069 0.98402 0.90949 0.89457 1.84010 1.66799 1.45147 1.12777 1.25057 0.94703 0.90041 0.92285 1.22705 1.07996 1.02069 0.91909 1.20889 1.02771 0.96886 0.95798 1.21872 0.94857 0.80854 1.02196 1.22356 0.95265 0.99516 0.89980 0.92669 1.02417 0.97135 0.96952 0.89250 0.86044 0.89521 0.76472 0.79264 0.72053 0.82427 0.89507 0.88962 0.97155 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.53 -29.59 8.41 25.60 0.22 -29.38 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 11.19 4.72 85.56 0.40 11.59 16 10 N -0.54 -23.47 4.62 -898.88 -4.15 -27.63 16 11 C 0.04 1.39 5.62 86.38 0.49 1.88 16 12 C 0.12 3.64 6.15 86.35 0.53 4.17 16 13 N -0.59 -19.74 3.00 -820.51 -2.46 -22.21 16 14 C 0.57 19.38 7.46 86.77 0.65 20.03 16 15 O -0.57 -21.80 15.97 -3.91 -0.06 -21.86 16 16 C 0.11 3.19 6.07 42.00 0.26 3.45 16 17 N -0.47 -10.95 7.22 -184.55 -1.33 -12.28 16 18 C 0.10 1.52 11.13 84.75 0.94 2.46 16 19 C -0.12 -1.54 10.13 22.46 0.23 -1.31 16 20 C 0.07 1.31 7.48 23.11 0.17 1.48 16 21 O -0.19 -3.25 10.57 -5.15 -0.05 -3.30 16 22 C 0.04 0.62 11.97 66.92 0.80 1.42 16 23 C -0.23 -5.10 10.66 23.44 0.25 -4.85 16 24 C -0.16 -4.14 6.13 -20.05 -0.12 -4.26 16 25 C 0.12 4.28 6.62 86.50 0.57 4.85 16 26 C 0.06 2.34 5.47 86.54 0.47 2.81 16 27 H 0.26 15.00 8.31 -92.72 -0.77 14.23 16 28 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 29 H 0.01 0.60 7.97 -2.38 -0.02 0.58 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 3.09 7.99 -2.39 -0.02 3.07 16 32 H 0.12 3.28 4.65 -2.39 -0.01 3.27 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 36 H 0.26 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.16 3.74 8.02 -2.91 -0.02 3.72 16 38 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.09 3.11 7.08 -2.39 -0.02 3.10 16 40 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.09 3.66 6.67 -2.39 -0.02 3.64 16 Total: -1.00 -75.91 341.69 1.62 -74.29 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.06 Total: 7.87 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.32 Total: 14.96 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -7.66 Total: -118.10 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.12 Total: -25.16 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -75.91 1.62 -74.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827478101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.909 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds