Wall clock time and date at job start Tue Mar 31 2020 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48498 * 109.46865 * 239.99887 * 3 2 1 5 5 H 1.48491 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46931 * 120.00452 * 3 2 1 7 7 C 1.37877 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47265 * 175.21448 * 9 7 2 11 11 C 1.46898 * 111.00212 * 296.59362 * 10 9 7 12 12 C 1.50699 * 109.46994 * 293.95606 * 11 10 9 13 13 C 1.35492 * 126.07549 * 269.68729 * 12 11 10 14 14 N 1.34954 * 108.98342 * 179.86583 * 13 12 11 15 15 H 0.97003 * 125.63428 * 180.12074 * 14 13 12 16 16 C 1.37699 * 108.73085 * 0.40135 * 14 13 12 17 17 C 1.46496 * 126.26062 * 179.78980 * 16 14 13 18 18 O 1.21621 * 119.99451 * 179.97438 * 17 16 14 19 19 O 1.34886 * 120.00079 * 359.96207 * 17 16 14 20 20 C 1.37989 * 107.47340 * 359.75767 * 16 14 13 21 21 C 1.46906 * 110.99595 * 60.54445 * 10 9 7 22 22 C 1.50702 * 109.47103 * 72.10861 * 21 10 9 23 23 C 1.38677 * 120.41530 * 263.85290 * 22 21 10 24 24 C 1.38627 * 118.41646 * 179.78694 * 23 22 21 25 25 C 1.38225 * 119.16402 * 0.50194 * 24 23 22 26 26 N 1.31858 * 120.76054 * 359.73420 * 25 24 23 27 27 C 1.31882 * 121.72680 * 359.97438 * 26 25 24 28 28 H 0.97005 * 119.99888 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46850 * 55.21181 * 9 7 2 30 30 H 1.08999 * 109.46638 * 295.21808 * 9 7 2 31 31 H 1.08997 * 109.47364 * 173.95023 * 11 10 9 32 32 H 1.09000 * 109.47209 * 53.94943 * 11 10 9 33 33 H 1.07997 * 125.50426 * 0.02562 * 13 12 11 34 34 H 0.96703 * 117.00130 * 179.97438 * 19 17 16 35 35 H 1.08002 * 126.51342 * 180.02562 * 20 16 14 36 36 H 1.09000 * 109.46496 * 192.10611 * 21 10 9 37 37 H 1.08995 * 109.46969 * 312.10647 * 21 10 9 38 38 H 1.08000 * 120.78758 * 0.02562 * 23 22 21 39 39 H 1.08007 * 120.41803 * 180.21512 * 24 23 22 40 40 H 1.07997 * 119.61997 * 179.75266 * 25 24 23 41 41 H 1.08005 * 119.61626 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2016 -3.6133 -0.1144 11 6 2.9201 -3.5624 -1.3946 12 6 1.9512 -3.7997 -2.5242 13 6 1.6322 -5.0015 -3.0626 14 7 0.7304 -4.8151 -4.0491 15 1 0.3364 -5.5142 -4.5941 16 6 0.4665 -3.4681 -4.1583 17 6 -0.4530 -2.8397 -5.1100 18 8 -0.6004 -1.6324 -5.1063 19 8 -1.1361 -3.5999 -5.9902 20 6 1.2263 -2.8186 -3.2070 21 6 3.1399 -3.6234 1.0159 22 6 2.4194 -4.0667 2.2630 23 6 1.9138 -3.1303 3.1522 24 6 1.2543 -3.5840 4.2840 25 6 1.1327 -4.9451 4.4925 26 7 1.6304 -5.8070 3.6276 27 6 2.2586 -5.4114 2.5376 28 1 -0.4850 0.8401 0.0004 29 1 0.5620 -2.5208 -0.8437 30 1 0.6899 -2.5946 0.9301 31 1 3.6912 -4.3327 -1.4094 32 1 3.3829 -2.5827 -1.5129 33 1 2.0329 -5.9547 -2.7507 34 1 -1.7313 -3.1402 -6.5981 35 1 1.2550 -1.7545 -3.0243 36 1 3.9568 -4.3131 0.8036 37 1 3.5403 -2.6206 1.1646 38 1 2.0278 -2.0727 2.9653 39 1 0.8448 -2.8830 4.9963 40 1 0.6238 -5.3067 5.3738 41 1 2.6534 -6.1470 1.8523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:50 Heat of formation + Delta-G solvation = -27.037857 kcal Electronic energy + Delta-G solvation = -25876.556136 eV Core-core repulsion = 22142.235102 eV Total energy + Delta-G solvation = -3734.321034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.32324 -40.96169 -40.60293 -38.30644 -37.10051 -34.57497 -33.78372 -32.68844 -31.77313 -30.76408 -28.98492 -27.34983 -25.93041 -24.76242 -24.27067 -23.53217 -21.74045 -21.17081 -20.61626 -19.31085 -18.68121 -18.29810 -17.76155 -17.15965 -16.83544 -16.67492 -16.41332 -16.22191 -15.91111 -15.40763 -14.76327 -14.71026 -14.54612 -14.32368 -14.26647 -14.08419 -13.81583 -13.59533 -13.26402 -13.08820 -12.80360 -12.67367 -12.65689 -12.28616 -12.07005 -11.98738 -11.89388 -11.84696 -11.59649 -10.57577 -10.48625 -10.28692 -9.81613 -9.68806 -9.15781 -8.83493 -8.05313 -6.22403 0.25736 0.35465 0.50308 1.35582 1.38253 1.43775 1.75558 1.93073 2.16711 2.40334 2.43667 3.01951 3.20178 3.70176 3.79261 4.08717 4.17807 4.23408 4.27380 4.29723 4.33450 4.40821 4.56899 4.62009 4.82782 4.90405 4.94623 5.08753 5.14593 5.16517 5.28220 5.38270 5.44266 5.50218 5.53441 5.63595 5.84571 5.88220 5.95262 5.99361 6.18446 6.37030 6.66663 6.69884 6.94791 7.00392 7.16054 7.47484 8.95051 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.004867 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.287856 B = 5751.195628 C = 7580.227942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.209 3.791 10 N -0.526 5.526 11 C 0.131 3.869 12 C -0.184 4.184 13 C 0.085 3.915 14 N -0.508 5.508 15 H 0.438 0.562 16 C -0.083 4.083 17 C 0.559 3.441 18 O -0.555 6.555 19 O -0.505 6.505 20 C -0.087 4.087 21 C 0.098 3.902 22 C -0.117 4.117 23 C -0.078 4.078 24 C -0.180 4.180 25 C 0.083 3.917 26 N -0.509 5.509 27 C 0.107 3.893 28 H 0.258 0.742 29 H 0.009 0.991 30 H -0.006 1.006 31 H 0.104 0.896 32 H 0.023 0.977 33 H 0.222 0.778 34 H 0.434 0.566 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.035 0.965 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.180 0.820 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -14.211 -3.717 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.082 3.918 10 N -0.249 5.249 11 C 0.004 3.996 12 C -0.189 4.189 13 C -0.055 4.055 14 N -0.105 5.105 15 H 0.280 0.720 16 C -0.193 4.193 17 C 0.406 3.594 18 O -0.447 6.447 19 O -0.320 6.320 20 C -0.115 4.115 21 C -0.030 4.030 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.199 4.199 25 C -0.074 4.074 26 N -0.218 5.218 27 C -0.050 4.050 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.012 0.988 31 H 0.122 0.878 32 H 0.041 0.959 33 H 0.238 0.762 34 H 0.296 0.704 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.132 0.868 39 H 0.165 0.835 40 H 0.197 0.803 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.786 -15.411 -3.437 16.237 hybrid contribution -0.241 3.753 -0.791 3.843 sum 3.545 -11.658 -4.228 12.898 Atomic orbital electron populations 1.70068 1.07436 1.27111 1.51697 1.25623 0.95236 1.02037 0.95304 0.85929 0.78616 0.80244 0.78857 1.20052 1.21756 1.19066 1.21872 0.93151 0.92700 1.49832 0.92338 1.19274 0.91420 0.86201 0.94868 1.62536 1.16846 1.44536 1.00966 1.20314 0.93277 1.00117 0.85911 1.19409 1.05475 0.92549 1.01512 1.22368 0.92899 1.00268 0.89992 1.41614 1.33863 1.05799 1.29223 0.72030 1.18968 1.09205 0.85263 1.05878 1.19572 0.77506 0.84021 0.78320 1.90963 1.65447 1.17080 1.71205 1.84499 1.56512 1.44108 1.46855 1.21262 0.96565 0.99041 0.94598 1.20916 0.93852 1.00158 0.88102 1.20887 0.99740 0.94738 0.96537 1.21726 0.94762 1.00145 0.93810 1.22331 1.00804 0.98074 0.98740 1.23094 0.96461 0.89374 0.98490 1.67698 1.10096 1.39990 1.03988 1.22838 0.94615 0.93825 0.93691 0.93318 0.97280 0.98754 0.87777 0.95872 0.76152 0.70427 0.87724 0.87974 0.94642 0.86817 0.83493 0.80331 0.80898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.99 13.29 21.45 0.28 -55.71 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.94 44.60 29.54 68.60 2.03 46.63 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.54 -28.41 7.34 25.60 0.19 -28.22 16 8 H 0.06 3.01 5.95 -2.91 -0.02 2.99 16 9 C 0.21 10.48 4.70 85.56 0.40 10.89 16 10 N -0.53 -20.05 4.65 -909.96 -4.23 -24.28 16 11 C 0.13 4.42 5.27 85.56 0.45 4.87 16 12 C -0.18 -6.13 4.96 -20.12 -0.10 -6.23 16 13 C 0.08 1.96 11.78 83.58 0.98 2.94 16 14 N -0.51 -11.72 6.07 -184.05 -1.12 -12.83 16 15 H 0.44 6.55 8.96 -92.71 -0.83 5.72 16 16 C -0.08 -2.80 7.10 40.32 0.29 -2.51 16 17 C 0.56 18.48 8.30 69.97 0.58 19.06 16 18 O -0.56 -23.49 17.67 19.44 0.34 -23.15 16 19 O -0.51 -10.80 13.44 -58.00 -0.78 -11.58 16 20 C -0.09 -3.54 9.18 22.59 0.21 -3.33 16 21 C 0.10 3.29 4.97 85.56 0.42 3.72 16 22 C -0.12 -3.94 4.90 -19.77 -0.10 -4.04 16 23 C -0.08 -2.80 8.73 22.47 0.20 -2.60 16 24 C -0.18 -5.43 10.11 22.36 0.23 -5.21 16 25 C 0.08 2.31 11.18 84.69 0.95 3.25 16 26 N -0.51 -15.70 10.36 -195.85 -2.03 -17.73 16 27 C 0.11 3.24 10.88 84.67 0.92 4.16 16 28 H 0.26 15.16 8.31 -92.70 -0.77 14.38 16 29 H 0.01 0.52 6.13 -2.39 -0.01 0.50 16 30 H -0.01 -0.31 6.66 -2.39 -0.02 -0.33 16 31 H 0.10 2.56 7.86 -2.39 -0.02 2.54 16 32 H 0.02 0.91 6.62 -2.39 -0.02 0.90 16 33 H 0.22 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.43 5.25 9.11 -74.06 -0.67 4.57 16 35 H 0.10 5.26 8.06 -2.91 -0.02 5.24 16 36 H 0.10 2.63 7.79 -2.39 -0.02 2.62 16 37 H 0.04 1.37 6.03 -2.39 -0.01 1.35 16 38 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -78.01 352.97 0.17 -77.84 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.41 Total: 22.61 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.08 Total: -1.81 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -7.09 Total: -110.55 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.44 Total: -34.72 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -78.01 0.17 -77.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.807 kcal (2) G-P(sol) polarization free energy of solvation -78.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds