Wall clock time and date at job start Tue Mar 31 2020 10:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00325 * 2 1 4 4 H 1.48501 * 109.47079 * 270.00182 * 3 2 1 5 5 H 1.48507 * 109.47034 * 29.99658 * 3 2 1 6 6 H 1.48494 * 109.47394 * 149.99952 * 3 2 1 7 7 C 1.37879 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99780 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00016 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47285 * 175.07544 * 9 7 2 11 11 C 1.46902 * 110.99697 * 295.69576 * 10 9 7 12 12 C 1.50699 * 109.46984 * 293.95563 * 11 10 9 13 13 C 1.35488 * 125.50718 * 265.01824 * 12 11 10 14 14 C 1.39793 * 107.84527 * 179.97438 * 13 12 11 15 15 C 1.37999 * 106.96653 * 359.74567 * 14 13 12 16 16 C 1.46497 * 126.26507 * 180.25529 * 15 14 13 17 17 O 1.21624 * 119.99430 * 0.18667 * 16 15 14 18 18 O 1.34886 * 119.99925 * 180.18803 * 16 15 14 19 19 N 1.34961 * 125.50884 * 85.00144 * 12 11 10 20 20 H 0.97002 * 125.63275 * 0.02562 * 19 12 11 21 21 C 1.46898 * 111.00469 * 59.64748 * 10 9 7 22 22 C 1.50706 * 109.47022 * 71.25281 * 21 10 9 23 23 C 1.38674 * 120.41436 * 263.92166 * 22 21 10 24 24 C 1.38631 * 118.41307 * 179.78235 * 23 22 21 25 25 C 1.38229 * 119.16263 * 0.51045 * 24 23 22 26 26 N 1.31849 * 120.76208 * 359.73055 * 25 24 23 27 27 C 1.31885 * 121.73144 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99538 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47327 * 55.07034 * 9 7 2 30 30 H 1.09008 * 109.46954 * 295.07129 * 9 7 2 31 31 H 1.09001 * 109.47367 * 173.95724 * 11 10 9 32 32 H 1.09003 * 109.47376 * 53.95265 * 11 10 9 33 33 H 1.08004 * 126.07823 * 0.02562 * 13 12 11 34 34 H 1.07999 * 126.52182 * 180.02562 * 14 13 12 35 35 H 0.96710 * 117.00069 * 179.97438 * 18 16 15 36 36 H 1.09001 * 109.47482 * 191.25077 * 21 10 9 37 37 H 1.09001 * 109.47283 * 311.25650 * 21 10 9 38 38 H 1.07997 * 120.79242 * 0.02562 * 23 22 21 39 39 H 1.08005 * 120.41636 * 180.22492 * 24 23 22 40 40 H 1.07994 * 119.61577 * 179.74590 * 25 24 23 41 41 H 1.07996 * 119.62240 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5740 0.1205 11 6 3.6154 -3.1595 1.4114 12 6 4.3224 -2.4305 2.5249 13 6 5.4876 -2.8133 3.1007 14 6 5.8066 -1.8751 4.0867 15 6 4.8060 -0.9248 4.0772 16 6 4.7235 0.2554 4.9412 17 8 5.5948 0.4700 5.7622 18 8 3.6813 1.1039 4.8261 19 7 3.8973 -1.2908 3.1095 20 1 3.0877 -0.8072 2.8826 21 6 3.5237 -3.4005 -0.9961 22 6 4.2354 -2.9953 -2.2612 23 6 3.6485 -2.0973 -3.1400 24 6 4.3419 -1.7500 -4.2891 25 6 5.5816 -2.3144 -4.5242 26 7 6.1068 -3.1691 -3.6685 27 6 5.4785 -3.5180 -2.5627 28 1 -0.4849 0.8401 -0.0004 29 1 3.8746 -0.6056 0.8436 30 1 3.8752 -0.7589 -0.9298 31 1 3.8959 -4.2126 1.4310 32 1 2.5374 -3.0681 1.5443 33 1 6.0673 -3.6873 2.8431 34 1 6.6739 -1.8886 4.7301 35 1 3.6702 1.8685 5.4182 36 1 3.7280 -4.4501 -0.7846 37 1 2.4504 -3.2573 -1.1212 38 1 2.6763 -1.6756 -2.9322 39 1 3.9169 -1.0507 -4.9939 40 1 6.1264 -2.0522 -5.4191 41 1 5.9406 -4.2207 -1.8852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:48 Heat of formation + Delta-G solvation = -4.149096 kcal Electronic energy + Delta-G solvation = -26099.785483 eV Core-core repulsion = 22366.456980 eV Total energy + Delta-G solvation = -3733.328503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.21403 -39.85122 -39.45858 -37.01475 -35.96044 -32.80077 -32.39730 -31.42160 -30.84003 -29.92431 -27.99520 -26.40891 -24.43312 -23.17970 -22.93454 -22.02303 -20.39424 -20.13671 -19.51897 -18.34484 -17.46702 -17.12372 -16.67676 -15.96264 -15.68607 -15.25153 -15.15581 -14.68785 -14.40922 -14.21156 -13.57746 -13.48904 -13.28056 -13.12955 -12.98249 -12.62280 -12.59805 -12.46350 -12.16023 -11.80579 -11.52319 -11.48146 -11.29958 -11.09527 -10.87461 -10.66170 -10.54673 -10.12606 -9.81204 -9.40046 -9.14127 -8.86388 -8.72964 -8.67306 -7.97374 -7.45998 -6.36473 -4.38870 1.38866 1.47996 1.66462 2.88971 3.08580 3.08903 3.18603 3.22947 3.36737 3.55845 4.12370 4.16243 4.73110 4.86931 4.96998 5.14305 5.21218 5.32845 5.35956 5.39632 5.47892 5.55684 5.60744 5.68848 5.85374 6.00154 6.06785 6.13335 6.23221 6.34863 6.42906 6.51475 6.52149 6.62463 6.77214 6.87646 7.03267 7.05501 7.20440 7.29035 7.67194 7.73077 7.77158 8.00526 8.16091 8.27272 8.64177 9.25620 10.74927 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.004942 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.730983 B = 5664.799648 C = 7011.417248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.081 3.919 3 Si 0.865 3.135 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.523 5.523 11 C 0.113 3.887 12 C 0.106 3.894 13 C -0.209 4.209 14 C -0.094 4.094 15 C -0.066 4.066 16 C 0.557 3.443 17 O -0.521 6.521 18 O -0.518 6.518 19 N -0.509 5.509 20 H 0.430 0.570 21 C 0.095 3.905 22 C -0.108 4.108 23 C -0.058 4.058 24 C -0.180 4.180 25 C 0.084 3.916 26 N -0.495 5.495 27 C 0.109 3.891 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -4.366 0.644 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.692 3.308 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.097 0.903 9 C 0.019 3.981 10 N -0.246 5.246 11 C -0.015 4.015 12 C -0.016 4.016 13 C -0.233 4.233 14 C -0.120 4.120 15 C -0.177 4.177 16 C 0.403 3.597 17 O -0.410 6.410 18 O -0.330 6.330 19 N -0.104 5.104 20 H 0.270 0.730 21 C -0.033 4.033 22 C -0.111 4.111 23 C -0.084 4.084 24 C -0.199 4.199 25 C -0.073 4.073 26 N -0.203 5.203 27 C -0.048 4.048 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.271 0.729 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.164 0.836 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.673 -4.743 0.414 9.030 hybrid contribution -1.814 2.408 0.411 3.043 sum 5.859 -2.335 0.825 6.361 Atomic orbital electron populations 1.69903 1.06213 1.27286 1.49147 1.24896 0.94574 0.98879 0.94044 0.87010 0.80558 0.84135 0.79142 1.19942 1.21014 1.18829 1.21619 0.90346 0.94661 1.53263 0.90289 1.20313 0.94539 0.85883 0.97383 1.62508 1.58661 1.03881 0.99539 1.20639 0.98272 0.96334 0.86297 1.20480 0.96300 0.88299 0.96531 1.20601 0.98044 1.03363 1.01321 1.21236 0.97698 0.93286 0.99828 1.19137 0.97899 0.99445 1.01197 1.19603 0.78500 0.81072 0.80522 1.90908 1.39856 1.74251 1.36025 1.84668 1.47085 1.38379 1.62823 1.42111 1.20888 1.20348 1.27028 0.73009 1.20912 0.98563 0.95986 0.87822 1.20805 0.96048 0.97491 0.96705 1.21788 1.00456 0.93886 0.92283 1.22116 0.96890 1.02008 0.98929 1.22595 0.93248 0.93484 0.98013 1.67636 1.35549 1.13479 1.03678 1.22581 0.91289 0.97750 0.93165 0.92383 0.95232 0.95403 0.89430 0.91789 0.83771 0.83647 0.72889 0.91110 0.91329 0.84021 0.85400 0.83574 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 13.96 55.43 0.77 -23.43 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.86 19.77 27.57 -169.99 -4.69 15.08 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.99 6.40 56.52 0.36 -5.62 16 7 C -0.56 -13.14 7.91 -34.44 -0.27 -13.41 16 8 H 0.08 2.00 6.18 -52.49 -0.32 1.67 16 9 C 0.15 3.04 3.81 -4.98 -0.02 3.02 16 10 N -0.52 -9.12 4.65 -238.96 -1.11 -10.23 16 11 C 0.11 1.77 5.32 -4.98 -0.03 1.75 16 12 C 0.11 1.71 5.85 -82.20 -0.48 1.23 16 13 C -0.21 -3.08 10.71 -39.98 -0.43 -3.50 16 14 C -0.09 -1.43 10.66 -39.09 -0.42 -1.85 16 15 C -0.07 -1.10 7.10 -81.99 -0.58 -1.68 16 16 C 0.56 9.02 8.30 34.06 0.28 9.30 16 17 O -0.52 -9.20 17.67 -19.36 -0.34 -9.54 16 18 O -0.52 -7.20 13.44 -41.00 -0.55 -7.75 16 19 N -0.51 -8.71 5.09 -5.82 -0.03 -8.74 16 20 H 0.43 7.78 8.63 -40.82 -0.35 7.43 16 21 C 0.10 1.51 4.95 -4.97 -0.02 1.49 16 22 C -0.11 -1.73 4.88 -104.48 -0.51 -2.24 16 23 C -0.06 -0.94 8.73 -39.28 -0.34 -1.29 16 24 C -0.18 -2.58 10.11 -39.44 -0.40 -2.98 16 25 C 0.08 1.18 11.18 -17.55 -0.20 0.98 16 26 N -0.49 -7.79 10.36 -13.26 -0.14 -7.93 16 27 C 0.11 1.67 10.88 -17.55 -0.19 1.48 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.03 0.65 4.78 -51.93 -0.25 0.41 16 30 H 0.03 0.62 6.34 -51.92 -0.33 0.29 16 31 H 0.09 1.12 7.87 -51.93 -0.41 0.71 16 32 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 33 H 0.14 1.77 8.06 -52.48 -0.42 1.34 16 34 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.41 3.57 9.11 45.56 0.42 3.99 16 36 H 0.07 0.93 7.81 -51.93 -0.41 0.53 16 37 H 0.07 1.24 5.98 -51.93 -0.31 0.92 16 38 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 39 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -29.99 349.29 -8.55 -38.54 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -4.02 Total: 14.49 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.70 Total: -5.75 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.51 Total: -50.33 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.89 Total: -17.29 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.69 Total: 15.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.99 -8.55 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.392 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds