Wall clock time and date at job start Tue Mar 31 2020 10:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00325 * 2 1 4 4 H 1.48501 * 109.47079 * 270.00182 * 3 2 1 5 5 H 1.48507 * 109.47034 * 29.99658 * 3 2 1 6 6 H 1.48494 * 109.47394 * 149.99952 * 3 2 1 7 7 C 1.37879 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99780 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00016 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47285 * 175.07544 * 9 7 2 11 11 C 1.46902 * 110.99697 * 295.69576 * 10 9 7 12 12 C 1.50699 * 109.46984 * 293.95563 * 11 10 9 13 13 C 1.35488 * 125.50718 * 265.01824 * 12 11 10 14 14 C 1.39793 * 107.84527 * 179.97438 * 13 12 11 15 15 C 1.37999 * 106.96653 * 359.74567 * 14 13 12 16 16 C 1.46497 * 126.26507 * 180.25529 * 15 14 13 17 17 O 1.21624 * 119.99430 * 0.18667 * 16 15 14 18 18 O 1.34886 * 119.99925 * 180.18803 * 16 15 14 19 19 N 1.34961 * 125.50884 * 85.00144 * 12 11 10 20 20 H 0.97002 * 125.63275 * 0.02562 * 19 12 11 21 21 C 1.46898 * 111.00469 * 59.64748 * 10 9 7 22 22 C 1.50706 * 109.47022 * 71.25281 * 21 10 9 23 23 C 1.38674 * 120.41436 * 263.92166 * 22 21 10 24 24 C 1.38631 * 118.41307 * 179.78235 * 23 22 21 25 25 C 1.38229 * 119.16263 * 0.51045 * 24 23 22 26 26 N 1.31849 * 120.76208 * 359.73055 * 25 24 23 27 27 C 1.31885 * 121.73144 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99538 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47327 * 55.07034 * 9 7 2 30 30 H 1.09008 * 109.46954 * 295.07129 * 9 7 2 31 31 H 1.09001 * 109.47367 * 173.95724 * 11 10 9 32 32 H 1.09003 * 109.47376 * 53.95265 * 11 10 9 33 33 H 1.08004 * 126.07823 * 0.02562 * 13 12 11 34 34 H 1.07999 * 126.52182 * 180.02562 * 14 13 12 35 35 H 0.96710 * 117.00069 * 179.97438 * 18 16 15 36 36 H 1.09001 * 109.47482 * 191.25077 * 21 10 9 37 37 H 1.09001 * 109.47283 * 311.25650 * 21 10 9 38 38 H 1.07997 * 120.79242 * 0.02562 * 23 22 21 39 39 H 1.08005 * 120.41636 * 180.22492 * 24 23 22 40 40 H 1.07994 * 119.61577 * 179.74590 * 25 24 23 41 41 H 1.07996 * 119.62240 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5740 0.1205 11 6 3.6154 -3.1595 1.4114 12 6 4.3224 -2.4305 2.5249 13 6 5.4876 -2.8133 3.1007 14 6 5.8066 -1.8751 4.0867 15 6 4.8060 -0.9248 4.0772 16 6 4.7235 0.2554 4.9412 17 8 5.5948 0.4700 5.7622 18 8 3.6813 1.1039 4.8261 19 7 3.8973 -1.2908 3.1095 20 1 3.0877 -0.8072 2.8826 21 6 3.5237 -3.4005 -0.9961 22 6 4.2354 -2.9953 -2.2612 23 6 3.6485 -2.0973 -3.1400 24 6 4.3419 -1.7500 -4.2891 25 6 5.5816 -2.3144 -4.5242 26 7 6.1068 -3.1691 -3.6685 27 6 5.4785 -3.5180 -2.5627 28 1 -0.4849 0.8401 -0.0004 29 1 3.8746 -0.6056 0.8436 30 1 3.8752 -0.7589 -0.9298 31 1 3.8959 -4.2126 1.4310 32 1 2.5374 -3.0681 1.5443 33 1 6.0673 -3.6873 2.8431 34 1 6.6739 -1.8886 4.7301 35 1 3.6702 1.8685 5.4182 36 1 3.7280 -4.4501 -0.7846 37 1 2.4504 -3.2573 -1.1212 38 1 2.6763 -1.6756 -2.9322 39 1 3.9169 -1.0507 -4.9939 40 1 6.1264 -2.0522 -5.4191 41 1 5.9406 -4.2207 -1.8852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:48 Heat of formation + Delta-G solvation = -24.911325 kcal Electronic energy + Delta-G solvation = -26100.685801 eV Core-core repulsion = 22366.456980 eV Total energy + Delta-G solvation = -3734.228821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43942 -41.03811 -40.67488 -38.42813 -37.16112 -34.66510 -33.65800 -32.59554 -32.06645 -31.28118 -29.61251 -27.64249 -25.94806 -24.41848 -24.23872 -23.28872 -21.69086 -21.45157 -20.81238 -19.62930 -19.12242 -18.47875 -17.83131 -17.21160 -16.94250 -16.68177 -16.51285 -16.08461 -15.95950 -15.60273 -14.79327 -14.73305 -14.52704 -14.44611 -14.36109 -14.15706 -13.86463 -13.60602 -13.45604 -13.35580 -12.99599 -12.80055 -12.71526 -12.67343 -12.26999 -12.05335 -11.92125 -11.84652 -11.71696 -10.84835 -10.61305 -10.32398 -9.95291 -9.83773 -9.23709 -8.93128 -8.35387 -6.37584 0.16657 0.31432 0.45098 1.23504 1.30943 1.36228 1.67959 1.95859 2.15625 2.24522 2.33637 2.94503 3.00545 3.50359 3.69198 3.92811 4.02451 4.11114 4.15004 4.23923 4.26654 4.40896 4.43416 4.53953 4.68582 4.78377 4.86029 4.90188 5.01046 5.04348 5.06632 5.11753 5.30288 5.33587 5.40702 5.44803 5.57755 5.87479 5.90016 6.01931 6.06980 6.27475 6.29889 6.43412 6.70483 6.89817 7.12445 7.29111 8.79079 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.004942 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.730983 B = 5664.799648 C = 7011.417248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.035 3.965 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.160 3.840 10 N -0.518 5.518 11 C 0.116 3.884 12 C 0.089 3.911 13 C -0.197 4.197 14 C -0.093 4.093 15 C -0.088 4.088 16 C 0.559 3.441 17 O -0.541 6.541 18 O -0.519 6.519 19 N -0.520 5.520 20 H 0.420 0.580 21 C 0.100 3.900 22 C -0.120 4.120 23 C -0.079 4.079 24 C -0.180 4.180 25 C 0.085 3.915 26 N -0.509 5.509 27 C 0.109 3.891 28 H 0.265 0.735 29 H 0.023 0.977 30 H 0.016 0.984 31 H 0.126 0.874 32 H 0.040 0.960 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.433 0.567 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.117 0.883 39 H 0.150 0.850 40 H 0.180 0.820 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.739 -5.210 0.301 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.165 4.165 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.572 4.572 8 H 0.073 0.927 9 C 0.032 3.968 10 N -0.240 5.240 11 C -0.012 4.012 12 C -0.032 4.032 13 C -0.220 4.220 14 C -0.119 4.119 15 C -0.198 4.198 16 C 0.406 3.594 17 O -0.432 6.432 18 O -0.334 6.334 19 N -0.114 5.114 20 H 0.259 0.741 21 C -0.028 4.028 22 C -0.122 4.122 23 C -0.106 4.106 24 C -0.199 4.199 25 C -0.072 4.072 26 N -0.218 5.218 27 C -0.047 4.047 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.143 0.857 32 H 0.058 0.942 33 H 0.192 0.808 34 H 0.180 0.820 35 H 0.296 0.704 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.197 0.803 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 10.009 -5.589 0.077 11.464 hybrid contribution -2.541 2.603 0.486 3.670 sum 7.469 -2.986 0.562 8.063 Atomic orbital electron populations 1.70014 1.07621 1.27732 1.51886 1.25474 0.94952 1.01550 0.94523 0.86215 0.79565 0.81242 0.78929 1.19899 1.21235 1.18379 1.21740 0.91775 0.93295 1.50405 0.92701 1.20023 0.92255 0.88249 0.96260 1.62496 1.58133 1.02500 1.00886 1.20736 0.96928 0.98270 0.85287 1.20723 0.97131 0.88362 0.97000 1.20943 0.97219 1.03728 1.00125 1.21564 0.97696 0.92797 0.99889 1.19467 0.98467 1.00289 1.01619 1.19589 0.78491 0.81183 0.80104 1.90891 1.40633 1.74848 1.36863 1.84632 1.46182 1.39127 1.63457 1.42182 1.20796 1.20835 1.27624 0.74136 1.20919 0.96821 0.97556 0.87518 1.20824 0.96704 0.98015 0.96667 1.21764 1.00036 0.94901 0.93855 1.22360 0.96976 1.02104 0.98471 1.23130 0.93050 0.92382 0.98590 1.67714 1.35914 1.14096 1.04091 1.22860 0.90743 0.97738 0.93403 0.92611 0.95890 0.96614 0.85654 0.94156 0.80804 0.81976 0.70443 0.87678 0.94175 0.86449 0.83268 0.80317 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.45 13.96 21.45 0.30 -52.15 16 2 C 0.03 1.81 5.47 84.65 0.46 2.27 16 3 Si 0.91 41.32 27.57 68.60 1.89 43.21 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.44 6.40 99.48 0.64 -10.81 16 7 C -0.53 -25.62 7.91 25.60 0.20 -25.41 16 8 H 0.05 2.89 6.18 -2.91 -0.02 2.87 16 9 C 0.16 6.66 3.81 85.56 0.33 6.99 16 10 N -0.52 -17.41 4.65 -909.93 -4.23 -21.64 16 11 C 0.12 3.46 5.32 85.56 0.46 3.91 16 12 C 0.09 2.73 5.85 41.44 0.24 2.97 16 13 C -0.20 -5.19 10.71 22.01 0.24 -4.96 16 14 C -0.09 -2.63 10.66 22.59 0.24 -2.39 16 15 C -0.09 -2.85 7.10 40.32 0.29 -2.56 16 16 C 0.56 17.70 8.30 69.97 0.58 18.28 16 17 O -0.54 -18.63 17.67 19.43 0.34 -18.29 16 18 O -0.52 -14.07 13.44 -58.00 -0.78 -14.84 16 19 N -0.52 -17.52 5.09 -172.32 -0.88 -18.40 16 20 H 0.42 15.40 8.63 -92.71 -0.80 14.60 16 21 C 0.10 3.07 4.95 85.56 0.42 3.49 16 22 C -0.12 -3.70 4.88 -19.77 -0.10 -3.79 16 23 C -0.08 -2.57 8.73 22.47 0.20 -2.37 16 24 C -0.18 -4.88 10.11 22.36 0.23 -4.65 16 25 C 0.09 2.18 11.18 84.69 0.95 3.13 16 26 N -0.51 -14.72 10.36 -195.85 -2.03 -16.75 16 27 C 0.11 3.08 10.88 84.67 0.92 4.00 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.02 1.01 4.78 -2.39 -0.01 1.00 16 30 H 0.02 0.70 6.34 -2.38 -0.02 0.69 16 31 H 0.13 2.78 7.87 -2.39 -0.02 2.77 16 32 H 0.04 1.41 6.69 -2.39 -0.02 1.39 16 33 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.43 7.04 9.11 -74.05 -0.67 6.37 16 36 H 0.11 2.49 7.81 -2.39 -0.02 2.47 16 37 H 0.04 1.47 5.98 -2.39 -0.01 1.46 16 38 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -65.10 349.29 -0.18 -65.28 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.45 Total: 34.68 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.65 Total: -1.11 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -6.84 Total: -108.94 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.44 Total: -33.13 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.89 Total: 43.21 kcal Total: -65.10 -0.18 -65.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.374 kcal (2) G-P(sol) polarization free energy of solvation -65.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds