Wall clock time and date at job start Tue Mar 31 2020 10:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00442 * 2 1 4 4 H 1.48497 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46766 * 299.99664 * 3 2 1 6 6 H 1.48503 * 109.46754 * 59.99419 * 3 2 1 7 7 C 1.37883 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99818 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99620 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46560 * 175.72317 * 9 7 2 11 11 C 1.46900 * 111.00197 * 59.75051 * 10 9 7 12 12 C 1.50700 * 109.47375 * 72.28529 * 11 10 9 13 13 C 1.35481 * 126.07861 * 266.94903 * 12 11 10 14 14 N 1.34957 * 108.98640 * 179.83165 * 13 12 11 15 15 H 0.96995 * 125.64096 * 180.15361 * 14 13 12 16 16 C 1.37698 * 108.72731 * 0.42883 * 14 13 12 17 17 C 1.46494 * 126.26603 * 179.73699 * 16 14 13 18 18 O 1.21618 * 120.00327 * 179.97438 * 17 16 14 19 19 O 1.34892 * 119.99792 * 0.02562 * 17 16 14 20 20 C 1.37994 * 107.47325 * 359.73696 * 16 14 13 21 21 C 1.46903 * 111.00439 * 295.78976 * 10 9 7 22 22 C 1.50702 * 109.47122 * 293.95953 * 21 10 9 23 23 C 1.38230 * 119.61791 * 94.97462 * 22 21 10 24 24 C 1.38628 * 119.15979 * 179.78805 * 23 22 21 25 25 C 1.38672 * 118.41724 * 0.47426 * 24 23 22 26 26 C 1.38178 * 119.16658 * 359.50853 * 25 24 23 27 27 N 1.31853 * 119.61533 * 274.99467 * 22 21 10 28 28 H 0.96998 * 119.99569 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47327 * 55.72588 * 9 7 2 30 30 H 1.08999 * 109.47130 * 295.72494 * 9 7 2 31 31 H 1.09002 * 109.46784 * 192.28660 * 11 10 9 32 32 H 1.08994 * 109.46714 * 312.28467 * 11 10 9 33 33 H 1.07997 * 125.50975 * 359.97407 * 13 12 11 34 34 H 0.96706 * 117.00263 * 179.97438 * 19 17 16 35 35 H 1.08007 * 126.51461 * 179.97438 * 20 16 14 36 36 H 1.08993 * 109.47362 * 173.95715 * 21 10 9 37 37 H 1.09008 * 109.46688 * 53.95595 * 21 10 9 38 38 H 1.08000 * 120.41814 * 359.97438 * 23 22 21 39 39 H 1.08003 * 120.79161 * 180.22872 * 24 23 22 40 40 H 1.08002 * 120.41922 * 179.77772 * 25 24 23 41 41 H 1.08000 * 119.61769 * 180.25531 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2022 -3.6138 -0.1021 11 6 3.1438 -3.6079 1.0254 12 6 2.4283 -4.0395 2.2796 13 6 1.8402 -3.2205 3.1846 14 7 1.3004 -3.9695 4.1689 15 1 0.8192 -3.6289 4.9391 16 6 1.5512 -5.2970 3.9025 17 6 1.1419 -6.4382 4.7247 18 8 1.4254 -7.5694 4.3794 19 8 0.4497 -6.2345 5.8645 20 6 2.2586 -5.3556 2.7191 21 6 2.9170 -3.5796 -1.3851 22 6 1.9450 -3.8330 -2.5086 23 6 1.3733 -2.7634 -3.1717 24 6 0.4839 -3.0074 -4.2066 25 6 0.1938 -4.3242 -4.5307 26 6 0.8043 -5.3420 -3.8233 27 7 1.6495 -5.0726 -2.8472 28 1 -0.4849 0.8401 -0.0004 29 1 0.5683 -2.5246 -0.8489 30 1 0.6826 -2.5905 0.9261 31 1 3.9624 -4.2972 0.8186 32 1 3.5412 -2.6022 1.1616 33 1 1.8066 -2.1426 3.1264 34 1 0.2014 -7.0184 6.3734 35 1 2.6141 -6.2486 2.2264 36 1 3.6887 -4.3492 -1.3917 37 1 3.3785 -2.6010 -1.5178 38 1 1.6189 -1.7503 -2.8891 39 1 0.0247 -2.1915 -4.7450 40 1 -0.4974 -4.5513 -5.3289 41 1 0.5868 -6.3702 -4.0723 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:58 Heat of formation + Delta-G solvation = -24.321830 kcal Electronic energy + Delta-G solvation = -25727.282252 eV Core-core repulsion = 21993.078994 eV Total energy + Delta-G solvation = -3734.203259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.34205 -41.00228 -40.58775 -38.23981 -37.07986 -34.53793 -33.45446 -33.06929 -31.80556 -30.63984 -29.08830 -27.53295 -25.91980 -24.87632 -24.23853 -23.44692 -21.67346 -21.30186 -20.69472 -19.30678 -18.68466 -18.26728 -17.44951 -17.12247 -16.81960 -16.63741 -16.41464 -16.28628 -16.15165 -15.43682 -14.84664 -14.76479 -14.46465 -14.28789 -14.22099 -14.06678 -13.89817 -13.50583 -13.19994 -13.06667 -12.68965 -12.64867 -12.62985 -12.34886 -12.10506 -12.01409 -11.87973 -11.84624 -11.55091 -10.66108 -10.48235 -10.20617 -9.83955 -9.71857 -9.19618 -8.80330 -8.01682 -6.20047 0.24703 0.33512 0.52670 1.40292 1.45856 1.54094 1.70309 1.94409 2.16436 2.39588 2.44724 2.98551 3.22695 3.57814 3.77227 4.08298 4.12265 4.23394 4.29677 4.34190 4.37344 4.40676 4.45274 4.67333 4.82248 4.84401 4.96625 5.00156 5.05676 5.12564 5.27850 5.36895 5.40741 5.47835 5.52672 5.54469 5.81492 5.89660 5.96478 5.99717 6.20445 6.41364 6.56627 6.65352 6.96574 7.02046 7.26191 7.50384 8.98854 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009653 B = 0.004742 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.819472 B = 5903.467124 C = 8056.785638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.025 3.975 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.206 3.794 10 N -0.534 5.534 11 C 0.131 3.869 12 C -0.171 4.171 13 C 0.063 3.937 14 N -0.513 5.513 15 H 0.434 0.566 16 C -0.076 4.076 17 C 0.566 3.434 18 O -0.545 6.545 19 O -0.510 6.510 20 C -0.084 4.084 21 C 0.112 3.888 22 C 0.134 3.866 23 C -0.164 4.164 24 C -0.088 4.088 25 C -0.174 4.174 26 C 0.080 3.920 27 N -0.498 5.498 28 H 0.260 0.740 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.178 0.822 34 H 0.435 0.565 35 H 0.145 0.855 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -7.018 2.429 7.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.175 4.175 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.080 3.920 10 N -0.257 5.257 11 C 0.003 3.997 12 C -0.177 4.177 13 C -0.077 4.077 14 N -0.109 5.109 15 H 0.274 0.726 16 C -0.186 4.186 17 C 0.413 3.587 18 O -0.436 6.436 19 O -0.325 6.325 20 C -0.111 4.111 21 C -0.016 4.016 22 C -0.004 4.004 23 C -0.185 4.185 24 C -0.114 4.114 25 C -0.194 4.194 26 C -0.078 4.078 27 N -0.208 5.208 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.025 0.975 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.195 0.805 34 H 0.298 0.702 35 H 0.163 0.837 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.742 -7.994 2.787 8.644 hybrid contribution -0.334 2.344 0.159 2.373 sum 1.408 -5.650 2.946 6.526 Atomic orbital electron populations 1.70089 1.07406 1.27169 1.51638 1.25559 0.95147 1.01735 0.95048 0.85774 0.79449 0.80714 0.77323 1.18945 1.21346 1.20978 1.21900 0.93316 0.92230 1.50044 0.92059 1.19372 0.91217 0.86096 0.95335 1.62377 1.17520 1.45438 1.00366 1.20288 0.92788 0.99697 0.86948 1.19357 1.07697 0.92436 0.98255 1.22103 0.98134 0.98049 0.89381 1.41680 1.42980 1.04693 1.21538 0.72575 1.19198 1.15425 0.82922 1.01068 1.19338 0.74004 0.86662 0.78704 1.90925 1.55702 1.24747 1.72244 1.84536 1.67954 1.45181 1.34789 1.21290 0.98814 0.97790 0.93222 1.20773 0.93395 1.00184 0.87245 1.21136 0.96017 0.88270 0.94949 1.22113 0.98802 1.00380 0.97165 1.21862 0.95419 0.98495 0.95617 1.22413 1.01789 0.92765 1.02386 1.23259 0.92304 1.01222 0.90974 1.67467 1.15584 1.22665 1.15085 0.93086 0.97890 0.97550 0.90315 0.93481 0.80490 0.70211 0.83725 0.89829 0.93370 0.86328 0.83408 0.81588 0.80291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.04 13.29 21.45 0.28 -50.75 16 2 C 0.02 1.26 5.46 84.66 0.46 1.72 16 3 Si 0.94 40.56 29.54 68.60 2.03 42.59 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.54 -26.45 7.34 25.60 0.19 -26.26 16 8 H 0.06 2.97 5.95 -2.91 -0.02 2.95 16 9 C 0.21 10.11 4.68 85.56 0.40 10.51 16 10 N -0.53 -22.43 4.64 -909.94 -4.23 -26.66 16 11 C 0.13 4.82 5.29 85.56 0.45 5.27 16 12 C -0.17 -6.05 5.09 -20.13 -0.10 -6.15 16 13 C 0.06 2.04 10.79 83.57 0.90 2.95 16 14 N -0.51 -13.99 6.07 -184.06 -1.12 -15.11 16 15 H 0.43 8.98 8.96 -92.71 -0.83 8.15 16 16 C -0.08 -2.32 7.10 40.32 0.29 -2.04 16 17 C 0.57 15.71 8.30 69.97 0.58 16.29 16 18 O -0.54 -18.16 17.67 19.45 0.34 -17.81 16 19 O -0.51 -9.57 13.44 -58.07 -0.78 -10.35 16 20 C -0.08 -2.85 10.60 22.59 0.24 -2.61 16 21 C 0.11 4.40 5.11 85.56 0.44 4.83 16 22 C 0.13 5.26 5.65 42.55 0.24 5.50 16 23 C -0.16 -6.31 8.25 22.36 0.18 -6.12 16 24 C -0.09 -2.75 10.18 22.47 0.23 -2.53 16 25 C -0.17 -4.63 10.11 22.36 0.23 -4.40 16 26 C 0.08 2.35 11.18 84.67 0.95 3.30 16 27 N -0.50 -18.56 10.27 -183.88 -1.89 -20.45 16 28 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.00 0.16 6.15 -2.39 -0.01 0.15 16 30 H 0.01 0.34 6.74 -2.39 -0.02 0.33 16 31 H 0.08 2.59 7.80 -2.39 -0.02 2.57 16 32 H 0.05 1.82 6.07 -2.39 -0.01 1.80 16 33 H 0.18 5.76 8.06 -2.91 -0.02 5.73 16 34 H 0.44 3.82 9.11 -74.05 -0.67 3.15 16 35 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.08 2.97 7.86 -2.39 -0.02 2.95 16 37 H 0.05 1.94 6.57 -2.38 -0.02 1.93 16 38 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 41 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -68.47 353.25 -0.10 -68.56 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.41 Total: 29.72 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.67 Total: 0.26 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -6.95 Total: -112.98 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.44 Total: -28.16 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -68.47 -0.10 -68.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.242 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds