Wall clock time and date at job start Tue Mar 31 2020 10:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47357 * 269.99628 * 3 2 1 5 5 H 1.48502 * 109.47130 * 30.00038 * 3 2 1 6 6 H 1.48508 * 109.47229 * 150.00070 * 3 2 1 7 7 C 1.37882 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99907 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00058 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.46770 * 183.54495 * 9 7 2 11 11 C 1.46903 * 111.00257 * 60.60956 * 10 9 7 12 12 C 1.50699 * 109.47373 * 71.97795 * 11 10 9 13 13 C 1.35482 * 125.50621 * 264.69338 * 12 11 10 14 14 C 1.39797 * 107.84292 * 179.87666 * 13 12 11 15 15 C 1.37999 * 106.96865 * 0.37947 * 14 13 12 16 16 C 1.46494 * 126.26402 * 179.79939 * 15 14 13 17 17 O 1.21613 * 119.99991 * 359.96072 * 16 15 14 18 18 O 1.34891 * 119.99574 * 179.97438 * 16 15 14 19 19 N 1.34958 * 125.50888 * 84.99708 * 12 11 10 20 20 H 0.97001 * 125.63018 * 359.97438 * 19 12 11 21 21 C 1.46899 * 111.00067 * 296.64899 * 10 9 7 22 22 C 1.50695 * 109.47369 * 293.95622 * 21 10 9 23 23 C 1.38235 * 119.61706 * 94.97655 * 22 21 10 24 24 C 1.38625 * 119.16064 * 179.78882 * 23 22 21 25 25 C 1.38674 * 118.41999 * 0.47899 * 24 23 22 26 26 C 1.38183 * 119.16235 * 359.50061 * 25 24 23 27 27 N 1.31856 * 119.62098 * 274.99979 * 22 21 10 28 28 H 0.96998 * 119.99543 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47190 * 63.54503 * 9 7 2 30 30 H 1.08998 * 109.46697 * 303.54144 * 9 7 2 31 31 H 1.09003 * 109.46946 * 191.97799 * 11 10 9 32 32 H 1.08997 * 109.46802 * 311.97405 * 11 10 9 33 33 H 1.08000 * 126.08131 * 359.97438 * 13 12 11 34 34 H 1.08005 * 126.51629 * 180.12632 * 14 13 12 35 35 H 0.96703 * 116.99292 * 180.02562 * 18 16 15 36 36 H 1.09004 * 109.47025 * 173.95832 * 21 10 9 37 37 H 1.08999 * 109.46803 * 53.96044 * 21 10 9 38 38 H 1.07994 * 120.41542 * 0.02562 * 23 22 21 39 39 H 1.07993 * 120.78855 * 180.23262 * 24 23 22 40 40 H 1.07995 * 120.41772 * 179.77933 * 25 24 23 41 41 H 1.08002 * 119.61443 * 180.25495 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5764 -0.0863 11 6 3.5426 -3.2210 -1.3241 12 6 4.2863 -2.6395 -2.4988 13 6 3.8459 -1.6294 -3.2870 14 6 4.8232 -1.3852 -4.2563 15 6 5.8487 -2.2801 -4.0287 16 6 7.0864 -2.3952 -4.8039 17 8 7.2818 -1.6572 -5.7505 18 8 8.0090 -3.3201 -4.4679 19 7 5.4960 -3.0444 -2.9390 20 1 6.0290 -3.7564 -2.5517 21 6 3.5963 -3.3530 1.0930 22 6 4.2846 -2.8046 2.3163 23 6 3.6335 -1.8780 3.1089 24 6 4.2738 -1.3831 4.2344 25 6 5.5548 -1.8331 4.5163 26 6 6.1423 -2.7611 3.6778 27 7 5.5013 -3.2138 2.6179 28 1 -0.4849 0.8401 -0.0004 29 1 3.8746 -0.7369 0.9205 30 1 3.8752 -0.6257 -0.8560 31 1 3.7333 -4.2927 -1.2678 32 1 2.4737 -3.0483 -1.4492 33 1 2.9074 -1.1050 -3.1839 34 1 4.7816 -0.6406 -5.0376 35 1 8.8097 -3.3580 -5.0088 36 1 3.8780 -4.3969 0.9549 37 1 2.5162 -3.2820 1.2213 38 1 2.6370 -1.5468 2.8566 39 1 3.7881 -0.6612 4.8742 40 1 6.0849 -1.4663 5.3828 41 1 7.1381 -3.1197 3.8928 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:55 Heat of formation + Delta-G solvation = -23.807399 kcal Electronic energy + Delta-G solvation = -25865.002200 eV Core-core repulsion = 22130.821248 eV Total energy + Delta-G solvation = -3734.180951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44127 -41.07635 -40.63717 -38.37101 -37.09694 -34.54490 -33.37621 -32.89426 -32.12782 -31.18620 -29.70206 -27.81035 -25.93738 -24.48513 -24.23245 -23.20073 -21.73037 -21.37659 -20.98539 -19.57445 -19.06698 -18.42464 -17.56245 -17.20178 -16.93162 -16.65847 -16.52639 -16.07940 -15.94722 -15.65230 -14.82394 -14.81848 -14.45396 -14.43332 -14.29713 -14.11942 -13.89757 -13.67145 -13.58975 -13.22472 -12.90755 -12.79571 -12.64034 -12.41092 -12.32093 -12.09472 -11.92174 -11.82325 -11.64328 -10.75642 -10.66496 -10.26861 -9.97869 -9.85443 -9.25756 -8.95649 -8.25754 -6.26483 0.15545 0.29463 0.47128 1.32897 1.38145 1.45188 1.61975 1.89809 2.13955 2.33756 2.35659 2.89622 3.11305 3.45175 3.53688 3.96239 4.02287 4.09562 4.17759 4.31471 4.32525 4.34768 4.38859 4.57573 4.63695 4.75773 4.90464 4.94761 4.99690 5.00896 5.07561 5.17616 5.28258 5.33157 5.40154 5.49668 5.53128 5.77427 5.90786 5.94627 6.11752 6.28944 6.33852 6.52651 6.78175 6.95005 7.19031 7.39508 8.89108 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.004909 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.702209 B = 5702.869733 C = 7461.457893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.034 3.966 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.164 3.836 10 N -0.519 5.519 11 C 0.115 3.885 12 C 0.102 3.898 13 C -0.217 4.217 14 C -0.104 4.104 15 C -0.068 4.068 16 C 0.568 3.432 17 O -0.544 6.544 18 O -0.508 6.508 19 N -0.500 5.500 20 H 0.433 0.567 21 C 0.111 3.889 22 C 0.132 3.868 23 C -0.171 4.171 24 C -0.088 4.088 25 C -0.172 4.172 26 C 0.082 3.918 27 N -0.493 5.493 28 H 0.263 0.737 29 H 0.019 0.981 30 H 0.023 0.977 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.436 0.564 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.120 0.880 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.935 -7.624 2.451 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.166 4.166 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.037 3.963 10 N -0.242 5.242 11 C -0.013 4.013 12 C -0.020 4.020 13 C -0.242 4.242 14 C -0.131 4.131 15 C -0.179 4.179 16 C 0.415 3.585 17 O -0.435 6.435 18 O -0.323 6.323 19 N -0.095 5.095 20 H 0.273 0.727 21 C -0.017 4.017 22 C -0.006 4.006 23 C -0.192 4.192 24 C -0.114 4.114 25 C -0.191 4.191 26 C -0.075 4.075 27 N -0.203 5.203 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.170 0.830 35 H 0.299 0.701 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.138 0.862 39 H 0.168 0.832 40 H 0.185 0.815 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 14.571 -8.054 1.911 16.758 hybrid contribution -0.947 1.597 0.237 1.871 sum 13.624 -6.458 2.149 15.229 Atomic orbital electron populations 1.70019 1.07650 1.27624 1.52411 1.25457 0.94971 1.01689 0.94450 0.86156 0.79520 0.80990 0.78971 1.19738 1.21289 1.18424 1.21663 0.91599 0.93310 1.49968 0.92806 1.19991 0.92534 0.87535 0.96265 1.62383 1.58457 1.02868 1.00529 1.20635 0.97173 0.97955 0.85506 1.20369 0.86627 0.97871 0.97101 1.20833 1.02106 1.01947 0.99270 1.21458 0.92305 0.99001 1.00310 1.19201 0.97148 1.03900 0.97624 1.19279 0.81856 0.76874 0.80529 1.90923 1.78511 1.44505 1.29605 1.84548 1.32735 1.54368 1.60633 1.41641 1.15631 1.29194 1.23084 0.72708 1.20818 0.96796 0.97199 0.86937 1.21036 0.90598 0.93681 0.95240 1.22195 1.02147 0.98301 0.96558 1.21904 0.95451 0.98200 0.95814 1.22450 0.95664 0.98783 1.02241 1.23285 1.00493 0.94004 0.89701 1.67458 1.08191 1.26634 1.18017 0.92742 0.96299 0.95883 0.88056 0.91757 0.84945 0.82988 0.70145 0.88766 0.93364 0.86207 0.83195 0.81546 0.80077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.35 13.96 21.45 0.30 -54.05 16 2 C 0.03 1.80 5.47 84.66 0.46 2.27 16 3 Si 0.92 42.89 27.40 68.60 1.88 44.77 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.26 -11.80 6.65 99.48 0.66 -11.14 16 7 C -0.53 -26.57 7.88 25.60 0.20 -26.37 16 8 H 0.05 2.94 6.20 -2.91 -0.02 2.92 16 9 C 0.16 7.29 3.73 85.56 0.32 7.61 16 10 N -0.52 -19.26 4.65 -909.96 -4.23 -23.48 16 11 C 0.12 3.82 5.34 85.56 0.46 4.28 16 12 C 0.10 3.34 6.04 41.44 0.25 3.59 16 13 C -0.22 -7.79 9.80 22.01 0.22 -7.57 16 14 C -0.10 -3.42 10.66 22.59 0.24 -3.18 16 15 C -0.07 -2.02 7.10 40.32 0.29 -1.73 16 16 C 0.57 15.16 8.30 69.97 0.58 15.74 16 17 O -0.54 -17.39 17.67 19.46 0.34 -17.04 16 18 O -0.51 -9.18 13.44 -58.05 -0.78 -9.96 16 19 N -0.50 -13.79 6.07 -172.33 -1.05 -14.84 16 20 H 0.43 9.59 8.96 -92.71 -0.83 8.76 16 21 C 0.11 3.86 5.10 85.56 0.44 4.30 16 22 C 0.13 4.58 5.64 42.55 0.24 4.82 16 23 C -0.17 -5.91 8.27 22.36 0.19 -5.73 16 24 C -0.09 -2.39 10.18 22.47 0.23 -2.16 16 25 C -0.17 -3.85 10.11 22.36 0.23 -3.63 16 26 C 0.08 2.05 11.18 84.67 0.95 3.00 16 27 N -0.49 -15.75 10.27 -183.88 -1.89 -17.64 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.02 0.89 5.51 -2.39 -0.01 0.88 16 30 H 0.02 1.08 6.00 -2.39 -0.01 1.07 16 31 H 0.10 2.66 7.81 -2.39 -0.02 2.64 16 32 H 0.06 2.47 6.28 -2.39 -0.02 2.46 16 33 H 0.13 5.21 8.06 -2.91 -0.02 5.19 16 34 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 35 H 0.44 3.49 9.11 -74.06 -0.67 2.81 16 36 H 0.09 2.84 7.86 -2.39 -0.02 2.83 16 37 H 0.05 1.87 6.35 -2.39 -0.02 1.86 16 38 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 40 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -68.76 349.89 -0.60 -69.36 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.46 Total: 27.65 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.28 Total: -4.76 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -6.87 Total: -110.02 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.44 Total: -27.00 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Total: -68.76 -0.60 -69.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.553 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds