Wall clock time and date at job start Tue Mar 31 2020 11:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38144 * 120.03471 * 2 1 4 4 C 1.38255 * 120.06637 * 180.02562 * 3 2 1 5 5 C 1.38309 * 120.13126 * 0.02562 * 4 3 2 6 6 C 1.38097 * 120.06523 * 359.74585 * 5 4 3 7 7 C 1.38816 * 120.03419 * 180.02562 * 2 1 3 8 8 N 1.40229 * 120.05928 * 359.95891 * 7 2 1 9 9 C 1.35042 * 126.60360 * 132.80454 * 8 7 2 10 10 C 1.36691 * 106.79018 * 179.97438 * 9 8 7 11 11 C 1.47369 * 125.77768 * 179.97438 * 10 9 8 12 12 O 1.21522 * 120.00131 * 0.02562 * 11 10 9 13 13 O 1.34754 * 120.00256 * 180.02562 * 11 10 9 14 14 C 1.45201 * 117.00501 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47218 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.46994 * 180.02562 * 15 14 13 17 17 C 1.50691 * 109.47079 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00229 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99835 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00158 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99691 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47288 * 90.00096 * 21 19 17 23 23 H 1.48504 * 109.46587 * 210.00122 * 21 19 17 24 24 H 1.48498 * 109.47439 * 329.99566 * 21 19 17 25 25 N 1.34454 * 108.44463 * 0.24313 * 10 9 8 26 26 N 1.28749 * 109.56715 * 359.58539 * 25 10 9 27 27 H 1.09008 * 109.46891 * 264.66340 * 1 2 3 28 28 H 1.08995 * 109.47000 * 24.65588 * 1 2 3 29 29 H 1.09002 * 109.47627 * 144.66574 * 1 2 3 30 30 H 1.07991 * 119.96638 * 0.04788 * 3 2 1 31 31 H 1.07998 * 119.93437 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.96359 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.03501 * 180.28052 * 6 5 4 34 34 H 1.08002 * 126.60344 * 359.95567 * 9 8 7 35 35 H 1.08998 * 109.46944 * 300.00211 * 14 13 11 36 36 H 1.09000 * 109.47011 * 59.99986 * 14 13 11 37 37 H 1.09006 * 109.47243 * 299.99575 * 15 14 13 38 38 H 1.09000 * 109.47345 * 59.99940 * 15 14 13 39 39 H 1.09006 * 109.46580 * 299.99738 * 16 15 14 40 40 H 1.09000 * 109.47322 * 59.99682 * 16 15 14 41 41 H 0.96996 * 120.00073 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2759 0.0009 -0.0016 6 6 3.5902 -1.1978 0.0032 7 6 2.2017 -1.2018 -0.0005 8 7 1.5026 -2.4173 -0.0002 9 6 1.7392 -3.4825 -0.7958 10 6 0.8257 -4.4406 -0.4550 11 6 0.7094 -5.7764 -1.0663 12 8 1.4688 -6.1058 -1.9560 13 8 -0.2390 -6.6329 -0.6387 14 6 -0.2948 -7.9316 -1.2857 15 6 -1.4260 -8.7589 -0.6721 16 6 -1.4844 -10.1276 -1.3535 17 6 -2.5981 -10.9428 -0.7487 18 1 -3.2036 -10.5265 0.0428 19 6 -2.8442 -12.2201 -1.2059 20 7 -2.1066 -12.7272 -2.1695 21 14 -4.2254 -13.2303 -0.4566 22 1 -5.4819 -12.9860 -1.2093 23 1 -3.8784 -14.6725 -0.5275 24 1 -4.4138 -12.8357 0.9625 25 7 0.0473 -3.9556 0.5282 26 7 0.4237 -2.7610 0.8266 27 1 -0.3633 -0.0956 1.0233 28 1 -0.3633 0.9339 -0.4287 29 1 -0.3634 -0.8383 -0.5943 30 1 1.6584 2.1312 0.0008 31 1 4.1193 2.1329 -0.0001 32 1 5.3559 0.0046 -0.0016 33 1 4.1333 -2.1312 0.0069 34 1 2.5028 -3.5620 -1.5554 35 1 -0.4793 -7.7987 -2.3517 36 1 0.6535 -8.4497 -1.1429 37 1 -1.2419 -8.8919 0.3941 38 1 -2.3742 -8.2407 -0.8153 39 1 -1.6682 -9.9950 -2.4197 40 1 -0.5361 -10.6457 -1.2100 41 1 -2.2800 -13.6256 -2.4913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840651464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:55 Heat of formation + Delta-G solvation = 29.227052 kcal Electronic energy + Delta-G solvation = -24105.603698 eV Core-core repulsion = 20373.722493 eV Total energy + Delta-G solvation = -3731.881205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.78943 -40.18847 -39.76676 -36.45154 -35.09972 -33.93476 -33.46106 -31.76558 -31.34774 -30.48617 -27.63697 -27.16687 -25.03609 -24.16157 -23.07974 -22.41751 -21.86186 -20.70813 -20.26966 -18.93097 -17.16388 -16.90924 -16.78568 -16.30623 -16.20385 -15.97609 -15.55038 -15.19498 -14.64481 -14.43292 -14.37193 -13.89061 -13.87124 -13.42846 -13.01316 -12.82855 -12.46440 -12.18304 -12.14666 -12.13161 -11.96317 -11.83683 -11.67069 -11.19105 -10.93921 -10.76437 -10.59179 -10.49512 -10.36485 -9.88009 -9.66625 -9.52274 -9.48230 -9.20031 -9.12425 -8.34871 -5.99909 -4.02435 0.08823 0.60806 0.96557 1.35816 1.52817 2.72671 2.93628 2.97093 3.34414 3.40313 3.44533 3.86231 4.04944 4.07303 4.31723 4.38759 4.46247 4.50470 4.59880 4.63775 4.85594 4.87501 5.04458 5.18408 5.21401 5.35053 5.36148 5.58112 5.61851 5.63711 5.66206 5.73320 5.77837 5.92642 6.05169 6.33007 6.45236 6.60251 6.83746 7.03656 7.52372 7.64737 7.75789 7.88955 7.98900 8.40420 9.03865 9.61628 11.11544 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.039834 B = 0.001889 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.745462 B =14815.818500 C =15287.767239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.055 4.055 3 C -0.108 4.108 4 C -0.100 4.100 5 C -0.110 4.110 6 C -0.103 4.103 7 C 0.117 3.883 8 N -0.315 5.315 9 C 0.104 3.896 10 C -0.075 4.075 11 C 0.552 3.448 12 O -0.507 6.507 13 O -0.336 6.336 14 C 0.068 3.932 15 C -0.110 4.110 16 C 0.024 3.976 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 N -0.172 5.172 26 N -0.051 5.051 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.210 0.790 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 32.144 3.068 35.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.057 4.057 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.129 4.129 6 C -0.124 4.124 7 C 0.026 3.974 8 N -0.093 5.093 9 C -0.050 4.050 10 C -0.211 4.211 11 C 0.393 3.607 12 O -0.395 6.395 13 O -0.251 6.251 14 C -0.005 4.005 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.558 4.558 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 N -0.047 5.047 26 N -0.030 5.030 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.227 0.773 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.309 32.249 3.803 35.095 hybrid contribution 0.124 -1.022 -0.548 1.166 sum 13.433 31.227 3.255 34.150 Atomic orbital electron populations 1.20862 0.89643 1.03079 1.03868 1.19904 0.97191 0.91089 0.97532 1.21050 0.94280 0.97104 1.00215 1.21387 0.94225 0.98667 0.97529 1.21066 1.00574 0.91290 0.99933 1.21140 0.91226 1.00095 0.99903 1.17359 0.90348 0.81776 1.07877 1.47553 1.25096 1.10894 1.25777 1.23414 0.99860 0.85856 0.95866 1.20404 1.00872 0.96570 1.03262 1.19323 0.78695 0.83080 0.79563 1.90877 1.42594 1.76868 1.29151 1.86649 1.50683 1.27186 1.60581 1.23614 1.01724 0.77992 0.97126 1.21780 0.95267 0.96963 1.00708 1.19058 0.97647 0.88682 0.95913 1.21186 1.15849 0.99037 1.19777 0.92372 1.25030 0.96541 0.97827 0.95102 1.69965 1.39419 1.16363 1.27677 0.86543 0.82228 0.79273 0.79673 1.20639 1.21232 1.19801 1.74856 1.18585 1.02139 1.09103 1.82245 0.99594 1.08188 1.12977 0.89527 0.90793 0.91501 0.84546 0.84861 0.84505 0.84663 0.77294 0.91226 0.91221 0.91979 0.91978 0.96196 0.96186 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 8.87 36.00 0.32 -0.52 16 2 C -0.06 -0.39 5.90 -104.45 -0.62 -1.01 16 3 C -0.11 -0.52 9.67 -39.61 -0.38 -0.90 16 4 C -0.10 -0.38 10.04 -39.55 -0.40 -0.78 16 5 C -0.11 -0.46 10.04 -39.61 -0.40 -0.86 16 6 C -0.10 -0.61 9.65 -39.41 -0.38 -0.99 16 7 C 0.12 0.94 6.26 -83.58 -0.52 0.42 16 8 N -0.31 -3.25 3.14 -10.41 -0.03 -3.29 16 9 C 0.10 1.07 10.97 -16.70 -0.18 0.89 16 10 C -0.08 -1.05 7.02 -83.56 -0.59 -1.64 16 11 C 0.55 9.07 7.96 34.45 0.27 9.34 16 12 O -0.51 -8.84 16.65 -19.28 -0.32 -9.16 16 13 O -0.34 -6.15 10.23 -40.64 -0.42 -6.57 16 14 C 0.07 1.30 5.48 37.15 0.20 1.50 16 15 C -0.11 -2.35 5.53 -26.73 -0.15 -2.50 16 16 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 17 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 21 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 N -0.17 -2.59 12.39 32.84 0.41 -2.19 16 26 N -0.05 -0.66 12.17 60.35 0.73 0.07 16 27 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 28 H 0.07 0.37 8.05 -51.93 -0.42 -0.05 16 29 H 0.07 0.60 7.21 -51.93 -0.37 0.23 16 30 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 31 H 0.13 0.20 8.06 -52.49 -0.42 -0.23 16 32 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 33 H 0.14 0.64 8.04 -52.49 -0.42 0.22 16 34 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -33.90 364.21 -7.20 -41.10 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -5.41 Total: -5.76 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.37 Total: -10.25 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 1.84 Total: -31.73 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.74 Total: -15.72 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.90 -7.20 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840651464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.327 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds