Wall clock time and date at job start Tue Mar 31 2020 10:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 112.84568 * 170.18852 * 3 2 1 5 5 N 1.46504 * 109.47087 * 48.80725 * 4 3 2 6 6 C 1.34779 * 119.99867 * 179.97438 * 5 4 3 7 7 O 1.21586 * 119.99972 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00057 * 179.97438 * 6 5 4 9 9 C 1.39938 * 120.00243 * 174.52606 * 8 6 5 10 10 C 1.38969 * 120.03307 * 325.03635 * 9 8 6 11 11 C 1.38151 * 120.06543 * 180.27553 * 10 9 8 12 12 C 1.38166 * 120.14493 * 0.02562 * 11 10 9 13 13 C 1.38912 * 120.06630 * 359.97438 * 12 11 10 14 14 O 1.35746 * 120.03729 * 179.97438 * 13 12 11 15 15 C 1.34825 * 117.00459 * 185.67138 * 14 13 12 16 16 H 1.08007 * 119.99744 * 5.37846 * 15 14 13 17 17 C 1.38653 * 120.00158 * 185.38429 * 15 14 13 18 18 N 1.31556 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47202 * 59.99484 * 19 17 15 21 21 H 1.48500 * 109.47079 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47230 * 299.99601 * 19 17 15 23 23 C 1.38704 * 120.04006 * 145.31920 * 9 8 6 24 24 C 1.53779 * 113.69226 * 301.45565 * 3 2 1 25 25 C 1.53780 * 87.07786 * 89.12936 * 24 3 2 26 26 C 1.53780 * 113.61539 * 38.99756 * 3 2 1 27 27 H 1.09006 * 109.47578 * 288.80409 * 4 3 2 28 28 H 1.09002 * 109.47181 * 168.80269 * 4 3 2 29 29 H 0.96989 * 120.00018 * 359.97438 * 5 4 3 30 30 H 0.97007 * 119.99713 * 354.52350 * 8 6 5 31 31 H 1.07995 * 119.96307 * 0.28238 * 10 9 8 32 32 H 1.08002 * 119.92696 * 180.02562 * 11 10 9 33 33 H 1.07994 * 119.97113 * 179.97438 * 12 11 10 34 34 H 0.97003 * 119.99657 * 180.02562 * 18 17 15 35 35 H 1.08006 * 120.06627 * 359.69559 * 23 9 8 36 36 H 1.08999 * 113.61019 * 203.67410 * 24 3 2 37 37 H 1.08995 * 113.61875 * 334.58417 * 24 3 2 38 38 H 1.08995 * 113.61782 * 270.87889 * 25 24 3 39 39 H 1.09005 * 113.69241 * 139.99180 * 25 24 3 40 40 H 1.09002 * 113.61714 * 25.34099 * 26 3 2 41 41 H 1.08992 * 113.61539 * 156.25071 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2014 1.3903 -0.2403 5 7 2.5522 2.3586 0.6470 6 6 2.9170 3.6556 0.6112 7 8 3.7852 4.0219 -0.1572 8 7 2.3195 4.5465 1.4271 9 6 2.7752 5.8688 1.4728 10 6 4.1301 6.1429 1.3298 11 6 4.5814 7.4476 1.3806 12 6 3.6881 8.4838 1.5740 13 6 2.3325 8.2163 1.7177 14 8 1.4555 9.2347 1.9082 15 6 0.1734 8.9000 2.1573 16 1 -0.0990 7.8625 2.2841 17 6 -0.7954 9.8875 2.2507 18 7 -0.4635 11.1512 2.0968 19 14 -2.5718 9.4236 2.5952 20 1 -2.6548 8.7152 3.8977 21 1 -3.4033 10.6529 2.6469 22 1 -3.0694 8.5340 1.5153 23 6 1.8759 6.9068 1.6668 24 6 3.2263 -0.7339 1.2012 25 6 3.1740 -2.0113 0.3467 26 6 3.2245 -1.0941 -0.8867 27 1 3.0371 1.6812 -1.2779 28 1 4.2715 1.3690 -0.0340 29 1 1.8600 2.0663 1.2603 30 1 1.5735 4.2710 1.9826 31 1 4.8308 5.3351 1.1788 32 1 5.6348 7.6581 1.2687 33 1 4.0440 9.5026 1.6136 34 1 -1.1412 11.8421 2.1625 35 1 0.8224 6.6964 1.7778 36 1 4.2391 -0.4082 1.4380 37 1 2.5758 -0.7664 2.0752 38 1 2.2388 -2.5629 0.4426 39 1 4.0530 -2.6468 0.4545 40 1 2.5726 -1.4174 -1.6982 41 1 4.2369 -0.8669 -1.2206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841597910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:45 Heat of formation + Delta-G solvation = 25.908221 kcal Electronic energy + Delta-G solvation = -24756.375787 eV Core-core repulsion = 21024.350667 eV Total energy + Delta-G solvation = -3732.025120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82058 -39.97461 -38.68976 -36.57073 -36.24188 -34.59932 -34.20122 -32.21897 -29.82083 -28.94279 -28.04824 -26.39659 -25.29814 -24.32879 -22.28110 -21.78165 -21.49136 -20.42287 -18.74888 -17.88230 -17.60486 -17.08555 -16.16227 -15.65914 -15.59936 -15.07345 -14.97393 -14.91535 -14.42358 -14.25596 -14.04477 -13.89681 -13.64738 -13.49807 -13.28446 -12.96212 -12.90183 -12.63168 -12.33740 -12.12112 -11.73963 -11.52120 -11.42991 -11.13831 -11.05232 -10.95269 -10.91703 -10.79689 -10.46361 -10.08513 -9.65723 -9.45320 -9.29347 -8.79036 -7.70051 -7.12462 -6.43452 -4.03091 2.06546 2.17701 2.28471 2.41578 2.62087 3.12667 3.13923 3.16838 3.25021 3.28869 3.86570 3.90330 3.97223 4.13850 4.17598 4.24968 4.62648 4.73977 5.08753 5.11264 5.11695 5.16094 5.28870 5.30294 5.35682 5.39134 5.47262 5.69102 5.71038 6.01688 6.09828 6.17386 6.27225 6.28433 6.53723 6.77653 7.02122 7.08777 7.11625 7.26326 7.34599 7.44893 7.84242 7.96252 8.01069 8.58586 9.01952 9.72642 10.74568 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.002799 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.102935 B =10000.958720 C =11483.661261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.222 3.778 3 C -0.011 4.011 4 C 0.161 3.839 5 N -0.750 5.750 6 C 0.705 3.295 7 O -0.568 6.568 8 N -0.682 5.682 9 C 0.198 3.802 10 C -0.204 4.204 11 C -0.063 4.063 12 C -0.202 4.202 13 C 0.169 3.831 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.089 0.911 17 C 0.040 3.960 18 N -0.862 5.862 19 Si 0.939 3.061 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.271 1.271 23 C -0.257 4.257 24 C -0.118 4.118 25 C -0.145 4.145 26 C -0.113 4.113 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.394 0.606 30 H 0.402 0.598 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.270 0.730 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.519 -24.960 -1.522 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.096 4.096 3 C -0.015 4.015 4 C 0.035 3.965 5 N -0.407 5.407 6 C 0.406 3.594 7 O -0.444 6.444 8 N -0.329 5.329 9 C 0.105 3.895 10 C -0.225 4.225 11 C -0.082 4.082 12 C -0.222 4.222 13 C 0.114 3.886 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.106 0.894 17 C -0.164 4.164 18 N -0.497 5.497 19 Si 0.764 3.236 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.279 4.279 24 C -0.157 4.157 25 C -0.182 4.182 26 C -0.152 4.152 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.228 0.772 30 H 0.237 0.763 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.492 -24.182 -2.244 25.416 hybrid contribution -1.463 -0.542 0.652 1.691 sum 6.030 -24.724 -1.592 25.499 Atomic orbital electron populations 1.81310 1.12250 1.07700 1.07654 1.28203 0.93930 0.93609 0.93853 1.19576 0.82640 0.97004 1.02295 1.21186 0.97240 0.83106 0.94955 1.45087 1.44295 1.06739 1.44586 1.15831 0.82105 0.80413 0.81065 1.90962 1.33965 1.78208 1.41215 1.42585 1.36868 1.08856 1.44554 1.17164 0.92507 0.80971 0.98865 1.20522 0.93444 0.96940 1.11569 1.20515 0.98246 0.91763 0.97628 1.20240 0.90657 0.99446 1.11823 1.19071 0.90383 0.87246 0.91850 1.84017 1.18338 1.28928 1.76652 1.21212 0.81160 0.94488 1.49966 0.89360 1.25261 0.99723 0.94655 0.96799 1.70026 1.34586 0.99391 1.45729 0.85816 0.80517 0.78152 0.79135 1.19548 1.20253 1.19599 1.20796 0.99468 0.91682 1.15965 1.23095 1.02140 0.94893 0.95555 1.22926 1.03193 0.96607 0.95465 1.22986 1.02205 0.92930 0.97039 0.90381 0.89090 0.77199 0.76341 0.86333 0.86620 0.86400 0.91982 0.85358 0.87483 0.90394 0.89968 0.89975 0.90170 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.85 18.54 42.15 0.78 -4.07 16 2 C 0.22 1.92 13.03 -20.76 -0.27 1.65 16 3 C -0.01 -0.06 1.03 -156.48 -0.16 -0.22 16 4 C 0.16 1.20 5.13 -4.04 -0.02 1.17 16 5 N -0.75 -7.45 5.31 -65.22 -0.35 -7.80 16 6 C 0.71 10.35 8.29 -86.92 -0.72 9.63 16 7 O -0.57 -10.34 14.14 5.29 0.07 -10.27 16 8 N -0.68 -10.41 5.34 -14.24 -0.08 -10.48 16 9 C 0.20 3.83 6.24 -83.71 -0.52 3.31 16 10 C -0.20 -3.90 8.66 -39.34 -0.34 -4.24 16 11 C -0.06 -1.18 10.03 -39.64 -0.40 -1.58 16 12 C -0.20 -4.35 9.99 -39.36 -0.39 -4.75 16 13 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 14 O -0.18 -5.04 9.76 0.07 0.00 -5.04 16 15 C -0.39 -10.96 9.44 30.89 0.29 -10.67 16 16 H 0.09 2.27 5.29 -52.48 -0.28 1.99 16 17 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 18 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 19 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.26 -5.64 9.05 -39.21 -0.35 -5.99 16 24 C -0.12 -0.43 7.20 -25.92 -0.19 -0.61 16 25 C -0.14 -0.45 7.79 -25.92 -0.20 -0.65 16 26 C -0.11 -0.38 7.21 -25.92 -0.19 -0.56 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.59 7.94 -51.93 -0.41 0.18 16 29 H 0.39 3.27 7.71 -40.82 -0.31 2.96 16 30 H 0.40 4.94 8.84 -40.82 -0.36 4.58 16 31 H 0.12 2.20 6.53 -52.49 -0.34 1.85 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.13 2.78 5.71 -52.48 -0.30 2.48 16 36 H 0.11 0.28 7.96 -51.93 -0.41 -0.14 16 37 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 38 H 0.08 0.32 8.13 -51.93 -0.42 -0.11 16 39 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 41 H 0.11 0.19 8.10 -51.93 -0.42 -0.23 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -35.36 355.94 -7.22 -42.58 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.93 Total: 7.41 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.82 Total: -8.65 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 1.12 Total: -46.99 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.08 Total: -15.31 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.36 -7.22 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841597910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.486 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds