Wall clock time and date at job start Tue Mar 31 2020 10:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52999 * 112.84568 * 170.18852 * 3 2 1 5 5 N 1.46504 * 109.47087 * 48.80725 * 4 3 2 6 6 C 1.34779 * 119.99867 * 179.97438 * 5 4 3 7 7 O 1.21586 * 119.99972 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00057 * 179.97438 * 6 5 4 9 9 C 1.39938 * 120.00243 * 174.52606 * 8 6 5 10 10 C 1.38969 * 120.03307 * 325.03635 * 9 8 6 11 11 C 1.38151 * 120.06543 * 180.27553 * 10 9 8 12 12 C 1.38166 * 120.14493 * 0.02562 * 11 10 9 13 13 C 1.38912 * 120.06630 * 359.97438 * 12 11 10 14 14 O 1.35746 * 120.03729 * 179.97438 * 13 12 11 15 15 C 1.34825 * 117.00459 * 185.67138 * 14 13 12 16 16 H 1.08007 * 119.99744 * 5.37846 * 15 14 13 17 17 C 1.38653 * 120.00158 * 185.38429 * 15 14 13 18 18 N 1.31556 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47202 * 59.99484 * 19 17 15 21 21 H 1.48500 * 109.47079 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47230 * 299.99601 * 19 17 15 23 23 C 1.38704 * 120.04006 * 145.31920 * 9 8 6 24 24 C 1.53779 * 113.69226 * 301.45565 * 3 2 1 25 25 C 1.53780 * 87.07786 * 89.12936 * 24 3 2 26 26 C 1.53780 * 113.61539 * 38.99756 * 3 2 1 27 27 H 1.09006 * 109.47578 * 288.80409 * 4 3 2 28 28 H 1.09002 * 109.47181 * 168.80269 * 4 3 2 29 29 H 0.96989 * 120.00018 * 359.97438 * 5 4 3 30 30 H 0.97007 * 119.99713 * 354.52350 * 8 6 5 31 31 H 1.07995 * 119.96307 * 0.28238 * 10 9 8 32 32 H 1.08002 * 119.92696 * 180.02562 * 11 10 9 33 33 H 1.07994 * 119.97113 * 179.97438 * 12 11 10 34 34 H 0.97003 * 119.99657 * 180.02562 * 18 17 15 35 35 H 1.08006 * 120.06627 * 359.69559 * 23 9 8 36 36 H 1.08999 * 113.61019 * 203.67410 * 24 3 2 37 37 H 1.08995 * 113.61875 * 334.58417 * 24 3 2 38 38 H 1.08995 * 113.61782 * 270.87889 * 25 24 3 39 39 H 1.09005 * 113.69241 * 139.99180 * 25 24 3 40 40 H 1.09002 * 113.61714 * 25.34099 * 26 3 2 41 41 H 1.08992 * 113.61539 * 156.25071 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2014 1.3903 -0.2403 5 7 2.5522 2.3586 0.6470 6 6 2.9170 3.6556 0.6112 7 8 3.7852 4.0219 -0.1572 8 7 2.3195 4.5465 1.4271 9 6 2.7752 5.8688 1.4728 10 6 4.1301 6.1429 1.3298 11 6 4.5814 7.4476 1.3806 12 6 3.6881 8.4838 1.5740 13 6 2.3325 8.2163 1.7177 14 8 1.4555 9.2347 1.9082 15 6 0.1734 8.9000 2.1573 16 1 -0.0990 7.8625 2.2841 17 6 -0.7954 9.8875 2.2507 18 7 -0.4635 11.1512 2.0968 19 14 -2.5718 9.4236 2.5952 20 1 -2.6548 8.7152 3.8977 21 1 -3.4033 10.6529 2.6469 22 1 -3.0694 8.5340 1.5153 23 6 1.8759 6.9068 1.6668 24 6 3.2263 -0.7339 1.2012 25 6 3.1740 -2.0113 0.3467 26 6 3.2245 -1.0941 -0.8867 27 1 3.0371 1.6812 -1.2779 28 1 4.2715 1.3690 -0.0340 29 1 1.8600 2.0663 1.2603 30 1 1.5735 4.2710 1.9826 31 1 4.8308 5.3351 1.1788 32 1 5.6348 7.6581 1.2687 33 1 4.0440 9.5026 1.6136 34 1 -1.1412 11.8421 2.1625 35 1 0.8224 6.6964 1.7778 36 1 4.2391 -0.4082 1.4380 37 1 2.5758 -0.7664 2.0752 38 1 2.2388 -2.5629 0.4426 39 1 4.0530 -2.6468 0.4545 40 1 2.5726 -1.4174 -1.6982 41 1 4.2369 -0.8669 -1.2206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841597910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:44 Heat of formation + Delta-G solvation = 1.641721 kcal Electronic energy + Delta-G solvation = -24757.428062 eV Core-core repulsion = 21024.350667 eV Total energy + Delta-G solvation = -3733.077395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79995 -40.88977 -40.24908 -38.22141 -36.96893 -35.63338 -35.56657 -34.22068 -31.14370 -30.43120 -29.17254 -27.28489 -26.66574 -25.05664 -23.51870 -23.44498 -22.11271 -21.62344 -20.16622 -19.40418 -19.19026 -17.83873 -17.25497 -16.90808 -16.58386 -16.36204 -16.28820 -15.92429 -15.62962 -15.60230 -15.44292 -15.03678 -14.91576 -14.56381 -14.43066 -14.10260 -13.94807 -13.58598 -13.29540 -13.22760 -13.09805 -12.76983 -12.63778 -12.53809 -12.45432 -12.16447 -11.70282 -11.56082 -11.43349 -11.30817 -11.30342 -11.09276 -10.72923 -10.20808 -9.32180 -8.82901 -8.46785 -6.15099 0.46732 0.73356 1.33971 1.43350 1.44750 1.49808 1.60265 1.63489 2.04342 2.16847 2.69325 2.85394 3.08219 3.18720 3.50779 3.51299 3.60063 3.64157 3.91820 4.13666 4.35486 4.43454 4.47436 4.59892 4.65428 4.70917 4.77848 4.87633 4.91369 5.04562 5.07691 5.10627 5.11535 5.19147 5.32308 5.36597 5.46360 5.49580 5.69258 5.71149 5.88493 6.01966 6.23122 6.43219 6.85460 6.97738 7.41261 7.78251 8.76111 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016115 B = 0.002799 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.102935 B =10000.958720 C =11483.661261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.245 3.755 3 C -0.012 4.012 4 C 0.157 3.843 5 N -0.732 5.732 6 C 0.705 3.295 7 O -0.602 6.602 8 N -0.678 5.678 9 C 0.206 3.794 10 C -0.194 4.194 11 C -0.049 4.049 12 C -0.215 4.215 13 C 0.134 3.866 14 O -0.226 6.226 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.016 2.984 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.261 1.261 23 C -0.264 4.264 24 C -0.112 4.112 25 C -0.142 4.142 26 C -0.105 4.105 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.404 0.596 30 H 0.416 0.584 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.273 0.727 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 -28.238 -1.441 29.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.073 4.073 3 C -0.017 4.017 4 C 0.033 3.967 5 N -0.388 5.388 6 C 0.405 3.595 7 O -0.481 6.481 8 N -0.326 5.326 9 C 0.110 3.890 10 C -0.215 4.215 11 C -0.068 4.068 12 C -0.235 4.235 13 C 0.082 3.918 14 O -0.133 6.133 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.835 3.165 20 H -0.179 1.179 21 H -0.197 1.197 22 H -0.186 1.186 23 C -0.286 4.286 24 C -0.150 4.150 25 C -0.179 4.179 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.240 0.760 30 H 0.253 0.747 31 H 0.153 0.847 32 H 0.174 0.826 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.897 -27.566 -2.154 29.046 hybrid contribution -1.625 0.238 0.555 1.734 sum 7.272 -27.327 -1.599 28.324 Atomic orbital electron populations 1.81332 1.14166 1.09591 1.09836 1.28817 0.94535 0.91886 0.92015 1.19807 0.80543 0.96515 1.04788 1.21439 0.98268 0.83088 0.93922 1.45040 1.43950 1.05358 1.44476 1.15940 0.81673 0.81421 0.80425 1.90937 1.35540 1.79049 1.42540 1.42491 1.37460 1.07566 1.45052 1.17181 0.92347 0.82178 0.97247 1.20864 0.93537 0.97512 1.09596 1.20935 0.99767 0.90795 0.95287 1.20489 0.90091 1.00606 1.12320 1.19612 0.91086 0.87747 0.93306 1.83978 1.19069 1.30998 1.79223 1.21728 0.81538 0.95355 1.50247 0.88207 1.26544 1.04640 0.94389 0.96342 1.70175 1.36343 1.00785 1.48385 0.84688 0.73967 0.78160 0.79658 1.17934 1.19651 1.18572 1.20806 0.99790 0.91605 1.16390 1.23171 1.02774 0.94489 0.94570 1.22907 1.03499 0.96555 0.94931 1.23087 1.03072 0.91494 0.96763 0.91311 0.87139 0.76049 0.74675 0.84736 0.82568 0.86258 0.91832 0.85809 0.85543 0.90747 0.91086 0.88189 0.90607 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.89 18.54 20.01 0.37 -10.52 16 2 C 0.24 3.88 13.03 89.44 1.17 5.05 16 3 C -0.01 -0.10 1.03 -53.46 -0.05 -0.15 16 4 C 0.16 1.88 5.13 86.38 0.44 2.32 16 5 N -0.73 -12.67 5.31 -478.52 -2.54 -15.21 16 6 C 0.70 19.02 8.29 179.05 1.48 20.50 16 7 O -0.60 -20.47 14.14 -3.99 -0.06 -20.52 16 8 N -0.68 -19.41 5.34 -317.23 -1.69 -21.10 16 9 C 0.21 7.66 6.24 38.13 0.24 7.90 16 10 C -0.19 -6.96 8.66 22.42 0.19 -6.77 16 11 C -0.05 -1.75 10.03 22.23 0.22 -1.53 16 12 C -0.22 -9.33 9.99 22.41 0.22 -9.10 16 13 C 0.13 6.74 6.64 22.56 0.15 6.89 16 14 O -0.23 -13.65 9.76 -22.65 -0.22 -13.87 16 15 C -0.41 -24.00 9.44 67.92 0.64 -23.36 16 16 H 0.10 5.30 5.29 -2.91 -0.02 5.28 16 17 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 18 N -0.92 -56.57 13.67 21.61 0.30 -56.28 16 19 Si 1.02 43.02 29.55 68.60 2.03 45.04 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 C -0.26 -11.68 9.05 22.51 0.20 -11.47 16 24 C -0.11 -0.43 7.20 31.12 0.22 -0.20 16 25 C -0.14 -0.43 7.79 31.12 0.24 -0.18 16 26 C -0.11 -0.37 7.21 31.12 0.22 -0.14 16 27 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.11 0.99 7.94 -2.39 -0.02 0.97 16 29 H 0.40 5.72 7.71 -92.72 -0.71 5.00 16 30 H 0.42 9.48 8.84 -92.70 -0.82 8.66 16 31 H 0.13 4.50 6.53 -2.91 -0.02 4.48 16 32 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.12 5.48 5.71 -2.91 -0.02 5.46 16 36 H 0.13 0.07 7.96 -2.39 -0.02 0.05 16 37 H 0.07 0.38 8.09 -2.39 -0.02 0.36 16 38 H 0.07 0.40 8.13 -2.39 -0.02 0.38 16 39 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 40 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 41 H 0.13 -0.10 8.10 -2.39 -0.02 -0.12 16 Total: -1.00 -81.09 355.94 3.81 -77.28 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.44 Total: 26.20 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 6.07 Total: -11.02 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -3.57 Total: -103.11 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.28 Total: -34.39 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -81.09 3.81 -77.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841597910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.922 kcal (2) G-P(sol) polarization free energy of solvation -81.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds