Wall clock time and date at job start Tue Mar 31 2020 10:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86803 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47292 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47280 * 299.99849 * 3 2 1 6 6 H 1.48496 * 109.46970 * 59.99910 * 3 2 1 7 7 C 1.38651 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00153 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99726 * 185.05751 * 9 7 2 11 11 C 1.38941 * 120.03593 * 174.18695 * 10 9 7 12 12 C 1.38112 * 120.03831 * 179.72074 * 11 10 9 13 13 C 1.38237 * 120.12311 * 0.55535 * 12 11 10 14 14 C 1.38780 * 120.07866 * 359.71803 * 13 12 11 15 15 O 1.35903 * 120.02080 * 179.97438 * 14 13 12 16 16 C 1.42905 * 116.99543 * 0.02562 * 15 14 13 17 17 C 1.50699 * 109.46613 * 180.02562 * 16 15 14 18 18 N 1.30837 * 126.46807 * 269.68807 * 17 16 15 19 19 N 1.28908 * 109.74081 * 179.79378 * 18 17 16 20 20 C 1.29835 * 109.48004 * 0.42608 * 19 18 17 21 21 N 1.34694 * 126.46640 * 90.00572 * 17 16 15 22 22 C 1.46263 * 128.84420 * 0.13048 * 21 17 16 23 23 C 1.53313 * 108.73170 * 162.90541 * 22 21 17 24 24 C 1.53135 * 109.58389 * 50.28605 * 23 22 21 25 25 C 1.50803 * 128.52404 * 179.85655 * 20 19 18 26 26 C 1.38618 * 119.96402 * 0.02562 * 14 13 12 27 27 H 0.97001 * 120.00376 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.98084 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.93740 * 180.27893 * 12 11 10 30 30 H 1.07999 * 119.95584 * 179.70584 * 13 12 11 31 31 H 1.08989 * 109.47414 * 300.00132 * 16 15 14 32 32 H 1.09000 * 109.46696 * 60.00663 * 16 15 14 33 33 H 1.09009 * 109.59032 * 282.67668 * 22 21 17 34 34 H 1.08998 * 109.59160 * 43.12864 * 22 21 17 35 35 H 1.09000 * 109.45288 * 170.32236 * 23 22 21 36 36 H 1.09000 * 109.44714 * 290.25192 * 23 22 21 37 37 H 1.09008 * 109.50202 * 50.51431 * 24 23 22 38 38 H 1.09000 * 109.50269 * 170.61702 * 24 23 22 39 39 H 1.09000 * 109.73162 * 44.41405 * 25 20 19 40 40 H 1.08999 * 109.76765 * 283.74800 * 25 20 19 41 41 H 1.07992 * 120.06419 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1046 11 6 1.4356 -4.7342 0.2316 12 6 2.1836 -5.8908 0.3338 13 6 3.5645 -5.8273 0.3216 14 6 4.2033 -4.6012 0.2006 15 8 5.5609 -4.5401 0.1893 16 6 6.2669 -5.7771 0.3053 17 6 7.7504 -5.5135 0.2746 18 7 8.5131 -5.4835 -0.7881 19 7 9.7285 -5.2259 -0.4445 20 6 9.7945 -5.0903 0.8450 21 7 8.5424 -5.2702 1.3365 22 6 8.1829 -5.2027 2.7527 23 6 9.4602 -5.3278 3.5914 24 6 10.5097 -4.3372 3.0791 25 6 11.0015 -4.7886 1.6972 26 6 3.4559 -3.4388 0.0925 27 1 -0.4851 0.8400 -0.0004 28 1 0.3569 -4.7861 0.2463 29 1 1.6888 -6.8461 0.4279 30 1 4.1467 -6.7329 0.4064 31 1 6.0033 -6.2590 1.2466 32 1 5.9962 -6.4292 -0.5251 33 1 7.7001 -4.2481 2.9622 34 1 7.5038 -6.0196 2.9967 35 1 9.2325 -5.1084 4.6345 36 1 9.8492 -6.3429 3.5109 37 1 10.0657 -3.3447 3.0010 38 1 11.3503 -4.3068 3.7724 39 1 11.5872 -3.9928 1.2371 40 1 11.6140 -5.6844 1.7992 41 1 3.9514 -2.4838 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842110119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:47 Heat of formation + Delta-G solvation = 38.113275 kcal Electronic energy + Delta-G solvation = -25263.190771 eV Core-core repulsion = 21531.694902 eV Total energy + Delta-G solvation = -3731.495869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.51261 -39.71616 -38.20928 -37.60808 -35.78816 -34.09276 -32.30954 -31.49428 -30.55645 -29.37738 -28.68290 -26.92399 -25.38891 -24.85890 -23.09458 -22.06198 -21.86239 -20.83384 -19.89779 -18.42478 -17.85524 -17.16969 -16.72010 -15.92992 -15.67313 -15.43564 -15.24761 -14.97815 -14.72667 -14.64905 -14.32112 -14.20621 -13.95572 -13.60161 -13.17046 -12.73317 -12.60004 -12.41636 -11.95504 -11.74662 -11.73766 -11.65226 -11.62881 -11.39391 -11.12603 -11.04996 -10.64657 -10.55667 -10.43010 -10.37432 -10.31536 -9.49766 -9.27857 -8.88306 -7.80529 -7.33082 -6.49840 -4.09210 1.45874 2.14068 2.18703 2.25242 2.59821 3.11239 3.13290 3.19104 3.48462 3.82333 3.94261 4.02297 4.10959 4.14442 4.31235 4.47666 4.62095 4.71717 4.76275 4.87253 5.04120 5.06866 5.14244 5.16286 5.20511 5.29154 5.32506 5.48020 5.56011 5.60313 5.68323 5.73939 5.93342 6.05792 6.18814 6.29020 6.59425 6.60791 6.92801 7.03452 7.15511 7.36524 7.46988 7.91200 7.96234 8.55871 8.95957 9.62638 10.67701 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003198 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.788593 B = 8753.316711 C = 9913.588494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.184 3.816 11 C -0.217 4.217 12 C -0.042 4.042 13 C -0.298 4.298 14 C 0.166 3.834 15 O -0.314 6.314 16 C 0.155 3.845 17 C 0.180 3.820 18 N -0.272 5.272 19 N -0.291 5.291 20 C 0.179 3.821 21 N -0.459 5.459 22 C 0.098 3.902 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.033 4.033 26 C -0.261 4.261 27 H 0.271 0.729 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.154 -11.502 9.835 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.129 3.871 11 C -0.237 4.237 12 C -0.061 4.061 13 C -0.318 4.318 14 C 0.122 3.878 15 O -0.227 6.227 16 C 0.077 3.923 17 C -0.087 4.087 18 N -0.115 5.115 19 N -0.131 5.131 20 C -0.089 4.089 21 N -0.151 5.151 22 C -0.025 4.025 23 C -0.172 4.172 24 C -0.167 4.167 25 C -0.072 4.072 26 C -0.281 4.281 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.207 -11.166 8.365 22.938 hybrid contribution -0.037 0.670 1.305 1.468 sum 18.170 -10.496 9.670 23.105 Atomic orbital electron populations 1.70042 1.05976 1.27731 1.45687 1.25300 0.95846 0.98880 0.96323 0.85644 0.79274 0.80229 0.78329 1.19007 1.19992 1.20064 1.21435 0.91992 0.80662 1.52821 0.88788 1.84004 1.34081 1.11494 1.77592 1.19019 0.89036 0.88185 0.90837 1.20193 0.99809 0.90207 1.13472 1.20401 0.92723 0.96889 0.96073 1.20611 0.95636 0.95352 1.20166 1.18583 0.79884 0.94132 0.95244 1.86068 1.17343 1.30353 1.88955 1.20539 0.81455 0.86963 1.03357 1.24041 0.95646 1.05478 0.83572 1.74518 0.96799 1.17204 1.22931 1.74103 1.12388 1.17864 1.08764 1.24737 0.87738 1.04037 0.92360 1.45957 1.08316 1.51767 1.09059 1.22146 0.99177 1.04919 0.76215 1.21935 0.94029 1.01159 1.00099 1.21733 0.99470 0.99571 0.95878 1.20245 0.91119 1.03447 0.92427 1.20310 0.93053 0.97351 1.17406 0.91950 0.86234 0.86578 0.87059 0.90427 0.88395 0.88501 0.88435 0.88661 0.90454 0.90706 0.89459 0.88033 0.88679 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 8 H 0.09 2.50 5.20 -52.49 -0.27 2.23 16 9 O -0.17 -4.81 9.76 0.03 0.00 -4.81 16 10 C 0.18 4.46 6.65 -39.13 -0.26 4.20 16 11 C -0.22 -4.51 9.99 -39.37 -0.39 -4.91 16 12 C -0.04 -0.73 10.03 -39.63 -0.40 -1.13 16 13 C -0.30 -5.03 9.04 -39.38 -0.36 -5.39 16 14 C 0.17 3.21 6.68 -39.24 -0.26 2.95 16 15 O -0.31 -5.62 10.12 -19.44 -0.20 -5.81 16 16 C 0.15 2.10 5.14 36.00 0.18 2.29 16 17 C 0.18 2.62 7.70 -155.45 -1.20 1.42 16 18 N -0.27 -4.70 12.23 32.70 0.40 -4.30 16 19 N -0.29 -4.65 12.21 32.76 0.40 -4.25 16 20 C 0.18 2.16 7.75 -155.31 -1.20 0.96 16 21 N -0.46 -5.38 3.11 -110.86 -0.35 -5.72 16 22 C 0.10 0.74 6.75 -4.01 -0.03 0.71 16 23 C -0.13 -0.63 5.94 -26.50 -0.16 -0.79 16 24 C -0.13 -0.64 5.96 -26.42 -0.16 -0.79 16 25 C -0.03 -0.23 6.34 -27.59 -0.17 -0.41 16 26 C -0.26 -5.92 9.10 -39.25 -0.36 -6.28 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 29 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.11 1.50 6.29 -52.49 -0.33 1.17 16 31 H 0.08 0.82 7.27 -51.94 -0.38 0.44 16 32 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16 33 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.10 0.59 7.85 -51.93 -0.41 0.18 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.07 0.44 8.12 -51.92 -0.42 0.02 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.13 3.17 5.64 -52.49 -0.30 2.87 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -35.11 345.29 -8.38 -43.49 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.02 Total: 1.72 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -4.56 Total: -16.88 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 1.21 Total: -38.58 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.20 Total: -10.62 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.11 -8.38 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842110119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.603 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds