Wall clock time and date at job start Tue Mar 31 2020 10:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86803 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47292 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47280 * 299.99849 * 3 2 1 6 6 H 1.48496 * 109.46970 * 59.99910 * 3 2 1 7 7 C 1.38651 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00153 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99726 * 185.05751 * 9 7 2 11 11 C 1.38941 * 120.03593 * 174.18695 * 10 9 7 12 12 C 1.38112 * 120.03831 * 179.72074 * 11 10 9 13 13 C 1.38237 * 120.12311 * 0.55535 * 12 11 10 14 14 C 1.38780 * 120.07866 * 359.71803 * 13 12 11 15 15 O 1.35903 * 120.02080 * 179.97438 * 14 13 12 16 16 C 1.42905 * 116.99543 * 0.02562 * 15 14 13 17 17 C 1.50699 * 109.46613 * 180.02562 * 16 15 14 18 18 N 1.30837 * 126.46807 * 269.68807 * 17 16 15 19 19 N 1.28908 * 109.74081 * 179.79378 * 18 17 16 20 20 C 1.29835 * 109.48004 * 0.42608 * 19 18 17 21 21 N 1.34694 * 126.46640 * 90.00572 * 17 16 15 22 22 C 1.46263 * 128.84420 * 0.13048 * 21 17 16 23 23 C 1.53313 * 108.73170 * 162.90541 * 22 21 17 24 24 C 1.53135 * 109.58389 * 50.28605 * 23 22 21 25 25 C 1.50803 * 128.52404 * 179.85655 * 20 19 18 26 26 C 1.38618 * 119.96402 * 0.02562 * 14 13 12 27 27 H 0.97001 * 120.00376 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.98084 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.93740 * 180.27893 * 12 11 10 30 30 H 1.07999 * 119.95584 * 179.70584 * 13 12 11 31 31 H 1.08989 * 109.47414 * 300.00132 * 16 15 14 32 32 H 1.09000 * 109.46696 * 60.00663 * 16 15 14 33 33 H 1.09009 * 109.59032 * 282.67668 * 22 21 17 34 34 H 1.08998 * 109.59160 * 43.12864 * 22 21 17 35 35 H 1.09000 * 109.45288 * 170.32236 * 23 22 21 36 36 H 1.09000 * 109.44714 * 290.25192 * 23 22 21 37 37 H 1.09008 * 109.50202 * 50.51431 * 24 23 22 38 38 H 1.09000 * 109.50269 * 170.61702 * 24 23 22 39 39 H 1.09000 * 109.73162 * 44.41405 * 25 20 19 40 40 H 1.08999 * 109.76765 * 283.74800 * 25 20 19 41 41 H 1.07992 * 120.06419 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8907 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3346 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1046 11 6 1.4356 -4.7342 0.2316 12 6 2.1836 -5.8908 0.3338 13 6 3.5645 -5.8273 0.3216 14 6 4.2033 -4.6012 0.2006 15 8 5.5609 -4.5401 0.1893 16 6 6.2669 -5.7771 0.3053 17 6 7.7504 -5.5135 0.2746 18 7 8.5131 -5.4835 -0.7881 19 7 9.7285 -5.2259 -0.4445 20 6 9.7945 -5.0903 0.8450 21 7 8.5424 -5.2702 1.3365 22 6 8.1829 -5.2027 2.7527 23 6 9.4602 -5.3278 3.5914 24 6 10.5097 -4.3372 3.0791 25 6 11.0015 -4.7886 1.6972 26 6 3.4559 -3.4388 0.0925 27 1 -0.4851 0.8400 -0.0004 28 1 0.3569 -4.7861 0.2463 29 1 1.6888 -6.8461 0.4279 30 1 4.1467 -6.7329 0.4064 31 1 6.0033 -6.2590 1.2466 32 1 5.9962 -6.4292 -0.5251 33 1 7.7001 -4.2481 2.9622 34 1 7.5038 -6.0196 2.9967 35 1 9.2325 -5.1084 4.6345 36 1 9.8492 -6.3429 3.5109 37 1 10.0657 -3.3447 3.0010 38 1 11.3503 -4.3068 3.7724 39 1 11.5872 -3.9928 1.2371 40 1 11.6140 -5.6844 1.7992 41 1 3.9514 -2.4838 -0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842110119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:46 Heat of formation + Delta-G solvation = 15.858878 kcal Electronic energy + Delta-G solvation = -25264.155794 eV Core-core repulsion = 21531.694902 eV Total energy + Delta-G solvation = -3732.460892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.48450 -41.27428 -39.88875 -38.24999 -37.41360 -34.94193 -34.31006 -32.44068 -31.57734 -30.65348 -30.26771 -27.99956 -27.38330 -25.48014 -23.83149 -23.60510 -23.25816 -22.10368 -20.55872 -20.07208 -19.59844 -18.13150 -17.80948 -17.23905 -17.04641 -16.84277 -16.72172 -16.07123 -15.93092 -15.53814 -15.46463 -15.23227 -15.05023 -14.82139 -14.65627 -14.19782 -13.99004 -13.50100 -13.30713 -13.26378 -12.81891 -12.71167 -12.64662 -12.25036 -12.15885 -12.14271 -12.05681 -11.94568 -11.88522 -11.47261 -11.40106 -11.16283 -10.83163 -10.31717 -9.43959 -9.00060 -8.52276 -6.21145 0.45502 0.54664 0.64312 1.31559 1.34443 1.39246 1.49263 1.54470 2.13501 2.30890 2.76833 3.03500 3.10668 3.29420 3.46640 3.48660 3.55924 3.71078 3.80828 3.94308 4.08221 4.22552 4.24772 4.30593 4.37948 4.42779 4.47842 4.55261 4.73147 4.77225 4.78968 4.87490 4.90712 4.99902 5.04526 5.07180 5.08904 5.23479 5.36402 5.58953 5.63185 5.78325 5.87503 5.98569 6.43852 6.92572 7.51747 7.69664 8.70475 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003198 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.788593 B = 8753.316711 C = 9913.588494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.016 4.016 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.416 4.416 8 H 0.094 0.906 9 O -0.222 6.222 10 C 0.151 3.849 11 C -0.232 4.232 12 C -0.024 4.024 13 C -0.269 4.269 14 C 0.169 3.831 15 O -0.333 6.333 16 C 0.151 3.849 17 C 0.167 3.833 18 N -0.319 5.319 19 N -0.339 5.339 20 C 0.188 3.812 21 N -0.456 5.456 22 C 0.084 3.916 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.035 4.035 26 C -0.283 4.283 27 H 0.275 0.725 28 H 0.121 0.879 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.448 -14.013 12.095 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.214 4.214 3 Si 0.834 3.166 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.112 0.888 9 O -0.127 6.127 10 C 0.100 3.900 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.288 4.288 14 C 0.124 3.876 15 O -0.246 6.246 16 C 0.074 3.926 17 C -0.102 4.102 18 N -0.161 5.161 19 N -0.179 5.179 20 C -0.081 4.081 21 N -0.147 5.147 22 C -0.036 4.036 23 C -0.165 4.165 24 C -0.163 4.163 25 C -0.074 4.074 26 C -0.303 4.303 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.186 0.814 30 H 0.180 0.820 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 20.536 -13.732 10.645 26.900 hybrid contribution -0.528 1.093 0.656 1.380 sum 20.008 -12.638 11.301 26.226 Atomic orbital electron populations 1.70160 1.07782 1.28907 1.48329 1.26500 0.96845 1.02445 0.95643 0.84593 0.77857 0.75153 0.78993 1.18427 1.19015 1.18630 1.21783 0.92282 0.81548 1.53614 0.88819 1.83962 1.35460 1.12503 1.80821 1.19574 0.89899 0.88371 0.92204 1.20520 1.00509 0.90201 1.13902 1.20974 0.92844 0.97480 0.92919 1.21199 0.95901 0.95889 1.15767 1.18563 0.80686 0.93913 0.94431 1.86039 1.16582 1.33339 1.88662 1.20897 0.80510 0.85362 1.05801 1.24169 0.96086 1.05838 0.84092 1.74385 0.97828 1.18874 1.25005 1.73992 1.12402 1.20275 1.11216 1.25642 0.89266 1.01331 0.91813 1.46223 1.07721 1.50601 1.10139 1.22593 1.01385 1.05401 0.74254 1.21984 0.92314 1.01562 1.00668 1.21764 1.00611 0.98859 0.95029 1.20577 0.89421 1.04637 0.92763 1.20270 0.93020 0.98014 1.18997 0.91587 0.86048 0.81436 0.82022 0.86483 0.87349 0.89130 0.86454 0.86121 0.89528 0.91955 0.86465 0.87671 0.86469 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.19 13.67 21.61 0.30 -55.89 16 2 C -0.02 -0.92 5.49 84.83 0.47 -0.46 16 3 Si 1.01 44.11 29.55 68.60 2.03 46.14 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.42 -24.97 9.49 67.92 0.64 -24.33 16 8 H 0.09 5.37 5.20 -2.91 -0.02 5.35 16 9 O -0.22 -13.49 9.76 -22.82 -0.22 -13.71 16 10 C 0.15 7.61 6.65 22.56 0.15 7.76 16 11 C -0.23 -9.52 9.99 22.41 0.22 -9.29 16 12 C -0.02 -0.74 10.03 22.24 0.22 -0.52 16 13 C -0.27 -7.86 9.04 22.40 0.20 -7.66 16 14 C 0.17 6.29 6.68 22.49 0.15 6.44 16 15 O -0.33 -11.46 10.12 -92.46 -0.94 -12.39 16 16 C 0.15 3.66 5.14 71.24 0.37 4.03 16 17 C 0.17 4.65 7.70 138.14 1.06 5.72 16 18 N -0.32 -11.06 12.23 -50.46 -0.62 -11.68 16 19 N -0.34 -10.90 12.21 -50.28 -0.61 -11.51 16 20 C 0.19 4.32 7.75 138.14 1.07 5.39 16 21 N -0.46 -9.84 3.11 -504.65 -1.57 -11.41 16 22 C 0.08 1.02 6.75 86.53 0.58 1.60 16 23 C -0.13 -0.68 5.94 30.74 0.18 -0.50 16 24 C -0.12 -0.81 5.96 30.80 0.18 -0.63 16 25 C -0.03 -0.40 6.34 30.04 0.19 -0.21 16 26 C -0.28 -13.28 9.10 22.49 0.20 -13.07 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 29 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.16 3.19 6.29 -2.91 -0.02 3.17 16 31 H 0.12 1.89 7.27 -2.39 -0.02 1.87 16 32 H 0.11 2.40 7.66 -2.39 -0.02 2.38 16 33 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.12 0.93 7.85 -2.39 -0.02 0.91 16 35 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.09 0.36 8.12 -2.39 -0.02 0.34 16 37 H 0.06 0.59 8.12 -2.38 -0.02 0.57 16 38 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 5.56 5.64 -2.91 -0.02 5.54 16 Total: -1.00 -85.52 345.29 5.33 -80.19 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.06 Total: 15.99 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 5.90 Total: -25.72 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -2.51 Total: -90.49 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.16 Total: -26.10 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -85.52 5.33 -80.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842110119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.052 kcal (2) G-P(sol) polarization free energy of solvation -85.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds