Wall clock time and date at job start Tue Mar 31 2020 10:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48491 * 109.47078 * 269.99853 * 3 2 1 5 5 H 1.48496 * 109.46891 * 30.00219 * 3 2 1 6 6 H 1.48503 * 109.46859 * 149.99785 * 3 2 1 7 7 C 1.38657 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00238 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47499 * 89.99897 * 15 14 13 17 17 N 1.31141 * 126.54787 * 89.70756 * 16 15 14 18 18 C 1.34496 * 105.61097 * 179.91684 * 17 16 15 19 19 C 1.50700 * 126.28505 * 180.12843 * 18 17 16 20 20 N 1.46894 * 112.85041 * 349.09345 * 19 18 17 21 21 C 1.53789 * 113.61142 * 217.79034 * 19 18 17 22 22 C 1.53782 * 87.07869 * 220.01922 * 21 19 18 23 23 C 1.53771 * 113.61416 * 120.29549 * 19 18 17 24 24 N 1.29949 * 107.42658 * 0.35685 * 18 17 16 25 25 O 1.21305 * 110.25201 * 359.77225 * 24 18 17 26 26 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 27 27 H 0.97001 * 120.00167 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 30 30 H 1.08001 * 119.93142 * 180.29665 * 13 12 11 31 31 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 32 32 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 33 33 H 1.00905 * 111.00209 * 309.66807 * 20 19 18 34 34 H 1.00902 * 111.00168 * 73.62393 * 20 19 18 35 35 H 1.08995 * 113.61171 * 334.56684 * 21 19 18 36 36 H 1.08999 * 113.61165 * 105.47060 * 21 19 18 37 37 H 1.09008 * 113.61410 * 270.88581 * 22 21 19 38 38 H 1.08992 * 113.61281 * 139.98259 * 22 21 19 39 39 H 1.09009 * 113.61354 * 254.52819 * 23 19 18 40 40 H 1.08999 * 113.61579 * 25.42947 * 23 19 18 41 41 H 1.07996 * 120.03714 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9735 -2.4056 -0.1055 11 6 3.2229 -3.5743 -0.0993 12 6 3.8532 -4.7984 -0.2026 13 6 5.2297 -4.8612 -0.3232 14 6 5.9794 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4672 16 6 7.8571 -3.7325 -1.9254 17 7 8.1029 -2.6605 -2.6396 18 6 8.3974 -3.1072 -3.8735 19 6 8.7574 -2.2598 -5.0665 20 7 8.5181 -0.8279 -4.8421 21 6 8.1774 -2.7830 -6.3913 22 6 9.5199 -2.4031 -7.0380 23 6 10.1485 -2.5688 -5.6444 24 7 8.3098 -4.4035 -3.8492 25 8 8.0005 -4.7828 -2.7393 26 6 5.3552 -2.4719 -0.2270 27 1 -0.4850 0.8400 0.0004 28 1 2.1477 -3.5258 -0.0091 29 1 3.2705 -5.7077 -0.1937 30 1 5.7201 -5.8196 -0.4087 31 1 7.9305 -2.9249 0.0485 32 1 7.8379 -4.7009 -0.0238 33 1 7.5873 -0.6681 -4.4869 34 1 9.2132 -0.4377 -4.2235 35 1 7.9818 -3.8552 -6.3889 36 1 7.3343 -2.1986 -6.7598 37 1 9.5504 -1.3796 -7.4119 38 1 9.8751 -3.1317 -7.7667 39 1 10.8967 -1.8116 -5.4100 40 1 10.4917 -3.5826 -5.4379 41 1 5.9411 -1.5647 -0.2359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842615911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:21 Heat of formation + Delta-G solvation = 66.129185 kcal Electronic energy + Delta-G solvation = -25404.763648 eV Core-core repulsion = 21674.482640 eV Total energy + Delta-G solvation = -3730.281008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.65075 -40.96643 -40.40946 -38.70239 -36.71583 -34.91738 -34.44408 -32.79438 -32.35764 -31.08710 -28.46460 -27.22614 -26.85956 -26.80432 -24.32660 -23.61080 -23.00333 -22.18553 -19.98326 -19.71271 -19.28648 -18.97224 -18.55206 -16.95853 -16.88610 -16.68797 -16.61431 -16.37645 -15.93829 -15.72880 -15.52285 -15.24424 -14.71520 -14.52057 -14.23693 -14.17245 -13.83084 -13.65291 -13.27170 -13.08921 -12.92169 -12.74227 -12.54737 -12.44326 -12.36950 -12.18405 -12.09082 -11.95381 -11.68725 -11.52799 -11.34064 -10.94404 -10.83807 -10.16428 -9.80336 -9.13931 -8.52550 -6.25570 0.01667 0.39970 0.63427 1.12198 1.29679 1.33423 1.49749 1.82813 2.25648 2.50525 2.74708 2.91001 3.01412 3.10789 3.21461 3.48321 3.66648 3.77856 3.80836 4.03138 4.05869 4.24085 4.28122 4.37530 4.47788 4.57063 4.65056 4.65811 4.70415 4.73636 4.87537 4.91408 4.94239 5.00999 5.12779 5.18180 5.34825 5.35312 5.57926 5.66191 5.72889 5.87379 5.93644 6.18028 6.26734 6.81857 7.10689 7.55711 8.59043 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.003580 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.584414 B = 7820.372655 C = 9203.717752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.400 4.400 8 H 0.081 0.919 9 O -0.245 6.245 10 C 0.117 3.883 11 C -0.233 4.233 12 C -0.078 4.078 13 C -0.164 4.164 14 C -0.053 4.053 15 C 0.025 3.975 16 C 0.200 3.800 17 N -0.501 5.501 18 C 0.140 3.860 19 C 0.168 3.832 20 N -0.797 5.797 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.114 4.114 24 N -0.395 5.395 25 O 0.075 5.925 26 C -0.171 4.171 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.155 0.845 33 H 0.348 0.652 34 H 0.355 0.645 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.959 -8.207 -6.856 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.476 4.476 8 H 0.099 0.901 9 O -0.152 6.152 10 C 0.068 3.932 11 C -0.252 4.252 12 C -0.095 4.095 13 C -0.183 4.183 14 C -0.054 4.054 15 C -0.013 4.013 16 C -0.020 4.020 17 N -0.235 5.235 18 C -0.135 4.135 19 C 0.071 3.929 20 N -0.326 5.326 21 C -0.163 4.163 22 C -0.149 4.149 23 C -0.153 4.153 24 N -0.104 5.104 25 O 0.019 5.981 26 C -0.190 4.190 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.161 0.839 30 H 0.177 0.823 31 H 0.152 0.848 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 22.170 -7.832 -8.388 24.965 hybrid contribution -1.191 0.370 1.378 1.859 sum 20.979 -7.462 -7.010 23.344 Atomic orbital electron populations 1.69721 1.06898 1.29627 1.50086 1.25258 0.95851 1.02105 0.95503 0.85251 0.78936 0.77555 0.79212 1.19338 1.19062 1.18531 1.20702 0.78091 0.96115 1.52716 0.90103 1.83517 1.21213 1.27400 1.83116 1.19610 0.93088 0.85208 0.95316 1.21411 1.00348 0.93480 1.09973 1.21164 0.95512 0.96315 0.96555 1.21165 0.93164 0.98662 1.05284 1.19248 0.94335 0.91964 0.99900 1.19341 0.91173 1.09591 0.81235 1.29127 0.93941 0.80459 0.98441 1.71823 1.19833 1.29230 1.02578 1.27382 1.00195 0.89675 0.96243 1.20708 0.99974 0.86138 0.86092 1.58941 1.09223 1.08823 1.55604 1.23063 0.99506 1.00719 0.93059 1.22642 0.93643 1.03100 0.95516 1.23049 0.93315 1.02407 0.96488 1.74493 1.20141 1.15257 1.00537 1.85256 1.62317 1.36229 1.14345 1.20320 0.90580 0.99067 1.09041 0.90540 0.87457 0.83895 0.82287 0.84773 0.82740 0.83913 0.83118 0.90059 0.90813 0.88576 0.89599 0.89305 0.89743 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.19 13.96 21.61 0.30 -54.89 16 2 C 0.01 0.66 5.49 84.84 0.47 1.12 16 3 Si 0.97 45.51 28.62 68.60 1.96 47.48 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.40 -23.53 9.95 67.92 0.68 -22.85 16 8 H 0.08 4.98 5.43 -2.91 -0.02 4.96 16 9 O -0.24 -13.21 8.59 -22.75 -0.20 -13.41 16 10 C 0.12 5.33 6.65 22.58 0.15 5.48 16 11 C -0.23 -9.91 9.17 22.39 0.21 -9.71 16 12 C -0.08 -2.47 10.04 22.25 0.22 -2.25 16 13 C -0.16 -4.28 9.70 22.30 0.22 -4.06 16 14 C -0.05 -1.44 5.11 -19.88 -0.10 -1.54 16 15 C 0.02 0.44 5.97 29.10 0.17 0.62 16 16 C 0.20 4.75 7.75 88.38 0.68 5.43 16 17 N -0.50 -13.54 11.41 -303.16 -3.46 -17.00 16 18 C 0.14 3.69 7.03 138.46 0.97 4.66 16 19 C 0.17 3.61 1.56 3.31 0.01 3.61 16 20 N -0.80 -16.48 9.14 -152.44 -1.39 -17.87 16 21 C -0.12 -2.53 7.42 31.12 0.23 -2.30 16 22 C -0.11 -1.70 8.00 31.12 0.25 -1.45 16 23 C -0.11 -1.92 7.42 31.12 0.23 -1.69 16 24 N -0.40 -10.70 11.77 -60.29 -0.71 -11.41 16 25 O 0.08 1.88 11.31 74.83 0.85 2.73 16 26 C -0.17 -6.21 9.65 22.39 0.22 -5.99 16 27 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.11 5.09 5.64 -2.91 -0.02 5.07 16 29 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 30 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.13 2.04 8.08 -2.39 -0.02 2.03 16 32 H 0.15 1.46 8.09 -2.38 -0.02 1.44 16 33 H 0.35 8.19 9.00 -89.69 -0.81 7.38 16 34 H 0.35 6.58 9.07 -89.69 -0.81 5.76 16 35 H 0.08 1.77 7.78 -2.39 -0.02 1.75 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.47 8.09 -2.39 -0.02 1.46 16 41 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -69.95 353.24 1.43 -68.53 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.53 Total: 26.76 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 4.60 Total: -30.93 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -5.26 Total: -101.16 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.65 Total: -10.68 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.96 Total: 47.48 kcal Total: -69.95 1.43 -68.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842615911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.654 kcal (2) G-P(sol) polarization free energy of solvation -69.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds