Wall clock time and date at job start Tue Mar 31 2020 10:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48502 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47512 * 300.00717 * 3 2 1 6 6 H 1.48504 * 109.46941 * 60.00941 * 3 2 1 7 7 C 1.38662 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99651 * 179.97438 * 7 2 1 9 9 O 1.34822 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00174 * 185.06130 * 9 7 2 11 11 C 1.38909 * 120.06408 * 354.46393 * 10 9 7 12 12 C 1.38071 * 119.92983 * 180.02562 * 11 10 9 13 13 C 1.38325 * 120.07123 * 359.97438 * 12 11 10 14 14 C 1.38281 * 120.13621 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96531 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46949 * 90.00173 * 15 14 13 17 17 N 1.31123 * 126.55416 * 89.99976 * 16 15 14 18 18 C 1.34499 * 105.61673 * 180.02562 * 17 16 15 19 19 C 1.50700 * 126.28812 * 180.02562 * 18 17 16 20 20 H 1.09005 * 109.90717 * 343.89583 * 19 18 17 21 21 C 1.53991 * 109.91850 * 105.00014 * 19 18 17 22 22 C 1.54593 * 105.14113 * 120.57761 * 21 19 18 23 23 C 1.54930 * 102.92080 * 21.95554 * 22 21 19 24 24 N 1.47901 * 109.91316 * 222.59010 * 19 18 17 25 25 N 1.29943 * 107.41974 * 359.97438 * 18 17 16 26 26 O 1.21302 * 110.25683 * 359.70741 * 25 18 17 27 27 C 1.38123 * 120.06973 * 0.26978 * 14 13 12 28 28 H 0.96993 * 119.99470 * 359.97438 * 1 2 3 29 29 H 1.07992 * 120.03096 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96527 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.93430 * 180.02562 * 13 12 11 32 32 H 1.08996 * 109.47278 * 329.99770 * 15 14 13 33 33 H 1.09003 * 109.47329 * 209.99890 * 15 14 13 34 34 H 1.09005 * 110.30648 * 239.49785 * 21 19 18 35 35 H 1.09003 * 110.31053 * 1.55761 * 21 19 18 36 36 H 1.08992 * 110.72465 * 140.31534 * 22 21 19 37 37 H 1.08998 * 110.72226 * 263.41705 * 22 21 19 38 38 H 1.09004 * 110.66818 * 81.02506 * 23 22 21 39 39 H 1.09002 * 110.67083 * 204.15178 * 23 22 21 40 40 H 1.00896 * 111.00493 * 335.82632 * 24 19 18 41 41 H 1.08003 * 120.03445 * 179.70587 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8909 2.3965 -1.2123 6 1 1.8911 2.3963 1.2127 7 6 2.0089 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4574 -3.4396 0.0922 12 6 4.2025 -4.5970 0.1998 13 6 3.5687 -5.8205 0.3215 14 6 2.1876 -5.8886 0.3352 15 6 1.5011 -7.2237 0.4673 16 6 1.2795 -7.5324 1.9256 17 7 0.2270 -7.2143 2.6401 18 6 0.4705 -7.6893 3.8746 19 6 -0.4422 -7.5789 5.0688 20 1 -1.2035 -6.8207 4.8852 21 6 -1.1113 -8.9380 5.3451 22 6 -0.6826 -9.3145 6.7819 23 6 -0.3052 -7.9453 7.4008 24 7 0.3431 -7.2292 6.2723 25 7 1.6366 -8.2619 3.8482 26 8 2.1156 -8.1881 2.7362 27 6 1.4366 -4.7349 0.2217 28 1 -0.4849 0.8400 0.0004 29 1 3.9528 -2.4847 -0.0031 30 1 5.2812 -4.5471 0.1891 31 1 4.1536 -6.7245 0.4059 32 1 2.1251 -7.9987 0.0225 33 1 0.5406 -7.1909 -0.0471 34 1 -2.1958 -8.8448 5.2860 35 1 -0.7574 -9.6854 4.6349 36 1 -1.5114 -9.7681 7.3253 37 1 0.1777 -9.9835 6.7648 38 1 -1.1973 -7.4137 7.7320 39 1 0.3946 -8.0759 8.2262 40 1 1.3063 -7.5119 6.1704 41 1 0.3580 -4.7893 0.2277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842641309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:24 Heat of formation + Delta-G solvation = 45.070166 kcal Electronic energy + Delta-G solvation = -25113.776143 eV Core-core repulsion = 21382.581947 eV Total energy + Delta-G solvation = -3731.194196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.69978 -40.82455 -39.89594 -38.56244 -36.80999 -35.00510 -34.25798 -32.46836 -31.11355 -30.89269 -30.18368 -28.44578 -27.25726 -25.17073 -24.27882 -23.28509 -22.69103 -22.23246 -21.27062 -19.70080 -19.16715 -18.91801 -18.64545 -17.35379 -16.75289 -16.57824 -16.41368 -16.12405 -15.97492 -15.45960 -15.22147 -15.08887 -14.90396 -14.57969 -14.15379 -14.03967 -13.80208 -13.57443 -13.27428 -12.99326 -12.89539 -12.75769 -12.68704 -12.48246 -12.28440 -12.24651 -12.20019 -12.09826 -12.06616 -11.72480 -11.26796 -10.98453 -10.82283 -9.85831 -9.74496 -9.02348 -8.47651 -6.16165 -0.01179 0.43903 0.71803 1.09966 1.34255 1.42570 1.52615 1.78903 2.16725 2.44003 2.78132 2.85495 3.11839 3.22797 3.41769 3.64963 3.68766 3.80993 3.87974 4.06902 4.09510 4.28185 4.36436 4.40438 4.43617 4.51029 4.55194 4.68936 4.71064 4.75145 4.80113 4.87919 4.93396 4.95505 5.03278 5.11657 5.13893 5.27040 5.54942 5.62064 5.68619 5.72152 6.01674 6.07428 6.18728 6.97028 7.05556 7.78098 8.75876 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.003039 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.117944 B = 9212.214532 C =10372.447165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.109 3.891 11 C -0.239 4.239 12 C -0.073 4.073 13 C -0.172 4.172 14 C -0.052 4.052 15 C 0.023 3.977 16 C 0.206 3.794 17 N -0.503 5.503 18 C 0.161 3.839 19 C 0.161 3.839 20 H 0.105 0.895 21 C -0.135 4.135 22 C -0.146 4.146 23 C 0.041 3.959 24 N -0.681 5.681 25 N -0.395 5.395 26 O 0.082 5.918 27 C -0.183 4.183 28 H 0.272 0.728 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.341 0.659 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 -20.248 8.164 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.059 3.941 11 C -0.259 4.259 12 C -0.091 4.091 13 C -0.191 4.191 14 C -0.053 4.053 15 C -0.015 4.015 16 C -0.014 4.014 17 N -0.237 5.237 18 C -0.112 4.112 19 C 0.050 3.950 20 H 0.123 0.877 21 C -0.175 4.175 22 C -0.185 4.185 23 C -0.088 4.088 24 N -0.310 5.310 25 N -0.104 5.104 26 O 0.024 5.976 27 C -0.202 4.202 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.167 0.833 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.158 0.842 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.778 -19.601 9.049 21.767 hybrid contribution 0.301 0.465 -0.487 0.738 sum 3.079 -19.136 8.562 21.189 Atomic orbital electron populations 1.70197 1.08043 1.28702 1.48932 1.26600 0.96854 1.02765 0.95913 0.84533 0.78280 0.74862 0.78557 1.17381 1.19164 1.19538 1.21853 0.92489 0.81432 1.53115 0.88081 1.83945 1.35965 1.12594 1.81519 1.19902 0.91684 0.87960 0.94591 1.21386 0.93076 1.00491 1.10902 1.21188 1.00465 0.91299 0.96166 1.21136 0.93068 0.98664 1.06212 1.19233 0.93898 0.92312 0.99860 1.19373 1.05471 0.95507 0.81107 1.29127 0.83760 0.90069 0.98471 1.71934 1.26064 1.22824 1.02876 1.26224 0.93017 0.96360 0.95643 1.20856 0.92047 0.99077 0.83069 0.87746 1.22823 1.02163 0.94235 0.98260 1.23074 1.02737 0.98382 0.94328 1.23306 1.00527 0.91722 0.93217 1.62962 1.06349 1.59057 1.02661 1.74417 1.12163 1.23024 1.00757 1.85241 1.41965 1.56308 1.14099 1.20284 0.99591 0.90299 1.10069 0.91870 0.86437 0.83335 0.82161 0.82280 0.85224 0.88534 0.92076 0.88048 0.91389 0.88927 0.88747 0.84194 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.38 13.67 21.62 0.30 -57.09 16 2 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 3 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.41 -24.33 9.49 67.92 0.64 -23.68 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -14.25 9.76 -22.71 -0.22 -14.47 16 10 C 0.11 5.42 6.65 22.58 0.15 5.57 16 11 C -0.24 -10.26 9.17 22.39 0.21 -10.06 16 12 C -0.07 -2.36 10.04 22.25 0.22 -2.14 16 13 C -0.17 -4.78 9.70 22.30 0.22 -4.56 16 14 C -0.05 -1.59 5.11 -19.88 -0.10 -1.69 16 15 C 0.02 0.50 5.97 29.10 0.17 0.67 16 16 C 0.21 5.51 7.75 88.38 0.68 6.20 16 17 N -0.50 -16.01 11.55 -303.18 -3.50 -19.51 16 18 C 0.16 4.71 6.75 138.46 0.94 5.64 16 19 C 0.16 3.96 3.95 44.31 0.18 4.13 16 20 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 21 C -0.13 -2.42 6.56 31.47 0.21 -2.21 16 22 C -0.15 -2.00 7.06 31.80 0.22 -1.78 16 23 C 0.04 0.64 7.55 86.65 0.65 1.29 16 24 N -0.68 -16.01 7.39 -484.02 -3.58 -19.59 16 25 N -0.39 -11.20 11.49 -60.31 -0.69 -11.89 16 26 O 0.08 2.17 11.31 74.81 0.85 3.02 16 27 C -0.18 -7.68 9.64 22.39 0.22 -7.46 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 30 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.16 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.13 2.53 8.08 -2.39 -0.02 2.51 16 34 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.06 1.20 7.68 -2.39 -0.02 1.18 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.34 8.39 7.90 -89.70 -0.71 7.68 16 41 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -76.97 350.86 0.61 -76.35 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.37 Total: 28.69 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 5.07 Total: -30.98 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -7.48 Total: -108.08 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.62 Total: -11.45 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -76.97 0.61 -76.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842641309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.422 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds