Wall clock time and date at job start Tue Mar 31 2020 10:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31548 * 1 3 3 Si 1.86808 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47140 * 300.00405 * 3 2 1 6 6 H 1.48505 * 109.46701 * 60.00167 * 3 2 1 7 7 C 1.38658 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00231 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99794 * 185.05185 * 9 7 2 11 11 C 1.38899 * 120.07162 * 354.44370 * 10 9 7 12 12 C 1.38073 * 119.93063 * 180.02562 * 11 10 9 13 13 C 1.38318 * 120.07280 * 359.75187 * 12 11 10 14 14 C 1.38284 * 120.13499 * 0.50481 * 13 12 11 15 15 C 1.50698 * 119.96506 * 179.76536 * 14 13 12 16 16 C 1.50694 * 109.47458 * 269.72545 * 15 14 13 17 17 N 1.31128 * 126.55462 * 89.99903 * 16 15 14 18 18 C 1.34491 * 105.62170 * 179.97438 * 17 16 15 19 19 C 1.50700 * 126.29047 * 179.97438 * 18 17 16 20 20 H 1.08996 * 110.36431 * 14.10568 * 19 18 17 21 21 C 1.54375 * 110.41180 * 251.62701 * 19 18 17 22 22 C 1.54264 * 105.06099 * 217.36854 * 21 19 18 23 23 C 1.54380 * 105.05764 * 359.97438 * 22 21 19 24 24 N 1.48562 * 110.40899 * 136.45088 * 19 18 17 25 25 N 1.29949 * 107.42232 * 0.24019 * 18 17 16 26 26 O 1.21310 * 110.24811 * 359.58018 * 25 18 17 27 27 C 1.38120 * 120.06961 * 359.49491 * 14 13 12 28 28 H 0.97005 * 120.00571 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.03013 * 0.02562 * 11 10 9 30 30 H 1.08009 * 119.96455 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.93782 * 180.25547 * 13 12 11 32 32 H 1.09006 * 109.46820 * 149.72341 * 15 14 13 33 33 H 1.09007 * 109.47296 * 29.72812 * 15 14 13 34 34 H 1.09001 * 110.32280 * 336.26209 * 21 19 18 35 35 H 1.08999 * 110.32545 * 98.37046 * 21 19 18 36 36 H 1.09001 * 110.32105 * 118.89620 * 22 21 19 37 37 H 1.08993 * 110.32159 * 241.00462 * 22 21 19 38 38 H 1.08995 * 110.41402 * 265.06965 * 23 22 21 39 39 H 1.09006 * 110.40994 * 142.62955 * 23 22 21 40 40 H 1.00891 * 111.00421 * 277.82050 * 24 19 18 41 41 H 1.08000 * 120.04005 * 180.23267 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3966 -1.2125 6 1 1.8907 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5046 0.1054 11 6 3.4576 -3.4394 0.0914 12 6 4.2027 -4.5969 0.1989 13 6 3.5690 -5.8198 0.3255 14 6 2.1879 -5.8885 0.3345 15 6 1.5016 -7.2235 0.4674 16 6 1.2644 -7.8051 -0.9024 17 7 2.0793 -8.5846 -1.5717 18 6 1.4536 -8.8517 -2.7319 19 6 1.9807 -9.7107 -3.8523 20 1 2.8335 -10.2976 -3.5114 21 6 2.3747 -8.8360 -5.0618 22 6 1.9691 -9.6598 -6.3014 23 6 1.3648 -10.9633 -5.7365 24 7 0.9108 -10.6031 -4.3683 25 7 0.3135 -8.2284 -2.7116 26 8 0.1832 -7.6255 -1.6671 27 6 1.4369 -4.7343 0.2274 28 1 -0.4851 0.8400 0.0004 29 1 3.9529 -2.4844 -0.0034 30 1 5.2815 -4.5468 0.1884 31 1 4.1540 -6.7234 0.4136 32 1 0.5468 -7.0921 0.9766 33 1 2.1314 -7.9000 1.0453 34 1 1.8300 -7.8921 -5.0398 35 1 3.4491 -8.6524 -5.0623 36 1 1.2254 -9.1202 -6.8877 37 1 2.8444 -9.8806 -6.9121 38 1 2.1223 -11.7458 -5.6927 39 1 0.5193 -11.2851 -6.3446 40 1 0.8157 -11.4250 -3.7909 41 1 0.3583 -4.7882 0.2382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842641311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:26 Heat of formation + Delta-G solvation = 45.323936 kcal Electronic energy + Delta-G solvation = -25012.351817 eV Core-core repulsion = 21281.168625 eV Total energy + Delta-G solvation = -3731.183192 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.60354 -40.82299 -39.67053 -38.55897 -36.73141 -34.97875 -34.25415 -32.42148 -31.41705 -30.86178 -30.11442 -28.41714 -27.24557 -25.14131 -24.23337 -23.23058 -22.65474 -21.98521 -21.24669 -19.62515 -19.10546 -18.87349 -18.38922 -17.80587 -16.77959 -16.73170 -16.40943 -16.13723 -15.97147 -15.44255 -15.20363 -14.96049 -14.55892 -14.26732 -14.14744 -13.81855 -13.70458 -13.55322 -13.50563 -13.05348 -12.97788 -12.82167 -12.65009 -12.50139 -12.31376 -12.25815 -12.18813 -12.09069 -12.06550 -11.59808 -11.24962 -10.89221 -10.82017 -9.75370 -9.74767 -9.02195 -8.47226 -6.15709 0.07692 0.46659 0.71984 1.16516 1.34939 1.43030 1.53100 1.90685 2.17062 2.40648 2.82670 3.02205 3.14293 3.34263 3.41931 3.56795 3.74454 3.85895 3.92245 4.09413 4.11749 4.26707 4.32672 4.40502 4.43937 4.53706 4.61440 4.65384 4.72353 4.76568 4.80222 4.89355 4.94918 4.99799 5.04241 5.12034 5.12391 5.27410 5.59903 5.61825 5.69754 5.71936 6.01878 6.18037 6.20446 6.97575 7.17459 7.78141 8.76141 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018228 B = 0.002727 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.738380 B =10266.295600 C =10727.375496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.412 4.412 8 H 0.102 0.898 9 O -0.232 6.232 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.074 4.074 13 C -0.169 4.169 14 C -0.050 4.050 15 C 0.023 3.977 16 C 0.198 3.802 17 N -0.489 5.489 18 C 0.172 3.828 19 C 0.159 3.841 20 H 0.099 0.901 21 C -0.118 4.118 22 C -0.119 4.119 23 C 0.042 3.958 24 N -0.673 5.673 25 N -0.386 5.386 26 O 0.061 5.939 27 C -0.188 4.188 28 H 0.272 0.728 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.349 0.651 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -21.812 -5.448 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.139 6.139 10 C 0.060 3.940 11 C -0.258 4.258 12 C -0.092 4.092 13 C -0.188 4.188 14 C -0.051 4.051 15 C -0.015 4.015 16 C -0.022 4.022 17 N -0.223 5.223 18 C -0.102 4.102 19 C 0.048 3.952 20 H 0.117 0.883 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.087 4.087 24 N -0.305 5.305 25 N -0.095 5.095 26 O 0.004 5.996 27 C -0.207 4.207 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.165 0.835 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.145 -21.405 -6.386 23.452 hybrid contribution 0.502 0.837 0.324 1.028 sum 7.647 -20.568 -6.063 22.766 Atomic orbital electron populations 1.70187 1.08024 1.28720 1.48926 1.26578 0.96836 1.02726 0.95922 0.84541 0.78281 0.74915 0.78542 1.17409 1.19536 1.19229 1.21847 0.92487 0.81414 1.53104 0.88087 1.83946 1.35895 1.12563 1.81494 1.19878 0.91599 0.87999 0.94497 1.21372 0.93170 1.00355 1.10879 1.21159 1.00379 0.91320 0.96305 1.21042 0.93292 0.98251 1.06192 1.19222 0.93868 0.92164 0.99860 1.19340 1.05090 0.92847 0.84245 1.29118 0.82031 0.92984 0.98095 1.71840 1.28989 1.16982 1.04447 1.25999 0.88643 0.99941 0.95646 1.20696 0.93092 0.92516 0.88944 0.88307 1.22362 1.02131 0.97926 0.93338 1.22320 1.01690 0.95347 0.96391 1.22990 1.00078 0.96864 0.88732 1.63423 1.42309 1.19860 1.04880 1.74675 1.21577 1.11011 1.02265 1.85343 1.40232 1.53335 1.20665 1.20343 0.99919 0.90155 1.10286 0.91856 0.86386 0.83566 0.83116 0.85049 0.82872 0.93690 0.89004 0.91472 0.88450 0.91364 0.88946 0.83450 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.78 13.67 21.61 0.30 -56.48 16 2 C -0.02 -1.32 5.49 84.84 0.47 -0.85 16 3 Si 1.02 42.95 29.55 68.60 2.03 44.98 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.41 -24.01 9.49 67.92 0.64 -23.37 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -13.96 9.76 -22.72 -0.22 -14.19 16 10 C 0.11 5.42 6.65 22.58 0.15 5.57 16 11 C -0.24 -10.18 9.17 22.39 0.21 -9.98 16 12 C -0.07 -2.42 10.04 22.25 0.22 -2.20 16 13 C -0.17 -4.92 9.70 22.30 0.22 -4.70 16 14 C -0.05 -1.54 5.11 -19.88 -0.10 -1.65 16 15 C 0.02 0.51 5.97 29.10 0.17 0.68 16 16 C 0.20 5.48 7.75 88.38 0.68 6.17 16 17 N -0.49 -13.67 11.55 -303.18 -3.50 -17.17 16 18 C 0.17 4.89 7.01 138.46 0.97 5.86 16 19 C 0.16 3.34 3.72 44.31 0.16 3.51 16 20 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 21 C -0.12 -2.36 6.54 31.49 0.21 -2.15 16 22 C -0.12 -1.72 7.00 31.49 0.22 -1.50 16 23 C 0.04 0.53 7.47 86.44 0.65 1.18 16 24 N -0.67 -12.63 7.27 -482.72 -3.51 -16.14 16 25 N -0.39 -12.81 12.16 -60.28 -0.73 -13.55 16 26 O 0.06 1.97 11.31 74.84 0.85 2.82 16 27 C -0.19 -7.69 9.65 22.39 0.22 -7.48 16 28 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 29 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 30 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 32 H 0.13 2.38 8.08 -2.38 -0.02 2.36 16 33 H 0.15 2.30 8.08 -2.38 -0.02 2.28 16 34 H 0.04 1.18 7.85 -2.39 -0.02 1.16 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 1.08 8.14 -2.38 -0.02 1.07 16 40 H 0.35 5.36 8.92 -89.70 -0.80 4.56 16 41 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -76.61 352.45 0.56 -76.05 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.27 Total: 24.58 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 5.09 Total: -30.90 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -7.45 Total: -103.34 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.62 Total: -11.37 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.61 0.56 -76.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842641311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.376 kcal (2) G-P(sol) polarization free energy of solvation -76.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds