Wall clock time and date at job start Tue Mar 31 2020 11:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29950 * 125.30588 * 2 1 4 4 O 1.41870 * 107.41479 * 179.97438 * 3 2 1 5 5 N 1.41880 * 106.39094 * 359.78083 * 4 3 2 6 6 C 1.29951 * 107.41013 * 0.37229 * 5 4 3 7 7 C 1.50703 * 125.30460 * 179.89643 * 6 5 4 8 8 C 1.50697 * 109.46593 * 269.68848 * 7 6 5 9 9 O 1.21291 * 120.00442 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00017 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99938 * 4.73184 * 10 8 7 12 12 C 1.50700 * 109.47139 * 270.00351 * 11 10 8 13 13 H 1.08000 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00272 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00547 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99640 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47038 * 89.99897 * 16 14 12 18 18 H 1.48499 * 109.47028 * 209.99586 * 16 14 12 19 19 H 1.48496 * 109.47300 * 330.00105 * 16 14 12 20 20 C 1.39932 * 120.00300 * 184.73263 * 10 8 7 21 21 C 1.38869 * 120.06903 * 247.87831 * 20 10 8 22 22 C 1.38106 * 119.92510 * 179.72527 * 21 20 10 23 23 C 1.38283 * 120.07354 * 0.22717 * 22 21 20 24 24 C 1.50706 * 119.92878 * 180.02562 * 23 22 21 25 25 C 1.38279 * 120.14292 * 0.04798 * 23 22 21 26 26 C 1.38118 * 120.06469 * 359.95351 * 25 23 22 27 27 H 1.08995 * 109.47273 * 269.99693 * 1 2 3 28 28 H 1.08996 * 109.46852 * 30.00495 * 1 2 3 29 29 H 1.09007 * 109.47060 * 149.99887 * 1 2 3 30 30 H 1.08991 * 109.47592 * 149.68828 * 7 6 5 31 31 H 1.08999 * 109.47120 * 29.68592 * 7 6 5 32 32 H 1.09001 * 109.47108 * 30.00068 * 11 10 8 33 33 H 1.08994 * 109.47001 * 150.00263 * 11 10 8 34 34 H 0.96997 * 120.00336 * 180.02562 * 15 14 12 35 35 H 1.07995 * 120.03600 * 359.97438 * 21 20 10 36 36 H 1.08003 * 119.96186 * 180.25373 * 22 21 20 37 37 H 1.08995 * 109.46855 * 90.00313 * 24 23 22 38 38 H 1.09005 * 109.46361 * 210.00016 * 24 23 22 39 39 H 1.08998 * 109.47145 * 329.99652 * 24 23 22 40 40 H 1.07994 * 119.97048 * 179.97438 * 25 23 22 41 41 H 1.08005 * 120.03008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0062 6 6 2.3213 -1.1499 0.0005 7 6 1.8209 -2.5714 0.0012 8 6 1.6542 -3.0459 -1.4194 9 8 1.9155 -2.3027 -2.3416 10 7 1.2147 -4.2961 -1.6651 11 6 0.8005 -5.1583 -0.5555 12 6 1.9873 -5.9437 -0.0596 13 1 2.9533 -5.8138 -0.5248 14 6 1.8398 -6.8279 0.9879 15 7 2.8753 -7.5137 1.4204 16 14 0.1691 -7.0519 1.7929 17 1 -0.5731 -8.1352 1.0996 18 1 0.3525 -7.4133 3.2216 19 1 -0.6001 -5.7853 1.6975 20 6 1.1540 -4.7705 -2.9802 21 6 -0.0764 -5.0188 -3.5742 22 6 -0.1331 -5.4817 -4.8741 23 6 1.0338 -5.7024 -5.5826 24 6 0.9682 -6.2069 -7.0011 25 6 2.2608 -5.4615 -4.9920 26 6 2.3242 -4.9986 -3.6923 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 0.8608 -2.6184 0.5150 31 1 2.5397 -3.2094 0.5154 32 1 0.4071 -4.5442 0.2546 33 1 0.0275 -5.8458 -0.8986 34 1 2.7715 -8.1360 2.1571 35 1 -0.9881 -4.8463 -3.0215 36 1 -1.0898 -5.6711 -5.3381 37 1 0.9272 -5.3603 -7.6863 38 1 1.8540 -6.8051 -7.2152 39 1 0.0762 -6.8204 -7.1277 40 1 3.1704 -5.6352 -5.5477 41 1 3.2828 -4.8103 -3.2317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845320778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:13 Heat of formation + Delta-G solvation = 82.004543 kcal Electronic energy + Delta-G solvation = -25989.482628 eV Core-core repulsion = 22259.890027 eV Total energy + Delta-G solvation = -3729.592601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42124 -40.09415 -38.37076 -35.53688 -34.46474 -33.32638 -32.84278 -31.71500 -30.67550 -29.32551 -28.70262 -28.26236 -25.95660 -23.17496 -22.64507 -22.12739 -21.54174 -20.57460 -19.01395 -17.28924 -17.19470 -16.68993 -16.41430 -15.64707 -15.42533 -15.16915 -14.66754 -14.41434 -14.31019 -14.04024 -13.61976 -13.58380 -13.46750 -13.23074 -13.14266 -12.92726 -12.58877 -12.36270 -12.19020 -12.06111 -11.70228 -11.63040 -11.47570 -11.45551 -11.19565 -10.90216 -10.81804 -10.69866 -10.55874 -10.44021 -9.79704 -9.56552 -8.86128 -8.65726 -8.62659 -7.79981 -6.33922 -4.38238 0.66177 1.56077 1.71893 2.04054 2.76841 2.89153 3.06954 3.11981 3.16365 3.20381 3.52192 3.96816 4.02775 4.13615 4.67294 4.89384 4.94897 4.97474 5.04630 5.08310 5.21512 5.24814 5.27305 5.29835 5.47806 5.64279 5.64903 5.68220 5.69670 5.78284 5.90492 5.95484 5.99554 6.26085 6.33530 6.40072 6.58242 6.82727 6.84259 6.99545 7.05434 7.25319 7.39538 7.74537 8.19674 8.51556 8.71614 9.22632 10.78258 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008231 B = 0.005751 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.107187 B = 4867.956609 C = 7168.328238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.089 3.911 3 N -0.287 5.287 4 O 0.020 5.980 5 N -0.259 5.259 6 C 0.102 3.898 7 C -0.079 4.079 8 C 0.531 3.469 9 O -0.545 6.545 10 N -0.549 5.549 11 C 0.207 3.793 12 C -0.549 4.549 13 H 0.081 0.919 14 C 0.080 3.920 15 N -0.884 5.884 16 Si 0.870 3.130 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 C 0.164 3.836 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.100 4.100 24 C -0.109 4.109 25 C -0.111 4.111 26 C -0.096 4.096 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.143 0.857 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.269 0.731 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 6.136 -6.560 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 N -0.033 5.033 4 O -0.120 6.120 5 N -0.002 5.002 6 C -0.082 4.082 7 C -0.120 4.120 8 C 0.318 3.682 9 O -0.423 6.423 10 N -0.276 5.276 11 C 0.087 3.913 12 C -0.587 4.587 13 H 0.099 0.901 14 C -0.125 4.125 15 N -0.520 5.520 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.188 1.188 20 C 0.074 3.926 21 C -0.140 4.140 22 C -0.133 4.133 23 C -0.100 4.100 24 C -0.166 4.166 25 C -0.130 4.130 26 C -0.115 4.115 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.144 0.856 31 H 0.161 0.839 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.832 7.229 -6.842 12.666 hybrid contribution -1.238 -0.943 0.720 1.715 sum -9.070 6.286 -6.123 12.620 Atomic orbital electron populations 1.20568 0.84465 1.05388 1.04602 1.24492 1.00189 0.88990 0.95733 1.79822 0.89305 1.19730 1.14394 1.93356 1.20026 1.13915 1.84712 1.79984 1.17480 0.90676 1.12070 1.23965 0.89853 0.98027 0.96324 1.20418 1.05711 0.88408 0.97457 1.19938 0.76805 0.81509 0.89950 1.90719 1.50738 1.54752 1.46132 1.45488 1.63331 1.13001 1.05803 1.20032 0.97154 0.90235 0.83870 1.21287 0.95983 1.23788 1.17634 0.90124 1.24854 0.96567 0.94818 0.96213 1.69873 1.29917 1.25471 1.26761 0.86959 0.84525 0.79449 0.79485 1.19772 1.20687 1.18759 1.17472 0.92971 0.97564 0.84616 1.21120 0.96781 1.00967 0.95130 1.20759 0.97632 1.00884 0.94015 1.19838 0.93224 1.00535 0.96396 1.20734 1.02439 1.00638 0.92780 1.20848 0.97161 1.00284 0.94689 1.21249 0.98072 0.97707 0.94495 0.88467 0.89214 0.88852 0.85637 0.83936 0.94287 0.94532 0.92125 0.86038 0.86162 0.91574 0.91754 0.91821 0.86140 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.05 36.01 0.36 -0.50 16 2 C 0.09 1.26 7.19 -82.38 -0.59 0.67 16 3 N -0.29 -4.64 12.98 33.74 0.44 -4.20 16 4 O 0.02 0.37 13.71 12.02 0.16 0.54 16 5 N -0.26 -4.82 12.98 33.74 0.44 -4.38 16 6 C 0.10 1.66 5.68 -82.38 -0.47 1.19 16 7 C -0.08 -1.24 4.53 -29.03 -0.13 -1.37 16 8 C 0.53 9.84 7.52 -10.99 -0.08 9.76 16 9 O -0.55 -11.47 15.80 5.55 0.09 -11.38 16 10 N -0.55 -10.42 2.51 -114.74 -0.29 -10.71 16 11 C 0.21 4.10 3.95 -5.19 -0.02 4.07 16 12 C -0.55 -13.40 9.71 -34.44 -0.33 -13.74 16 13 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 14 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.88 -24.48 13.96 55.43 0.77 -23.71 16 16 Si 0.87 18.26 27.47 -169.99 -4.67 13.59 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.26 -4.95 6.54 56.52 0.37 -4.58 16 20 C 0.16 3.07 4.75 -83.69 -0.40 2.67 16 21 C -0.12 -1.93 9.69 -39.40 -0.38 -2.31 16 22 C -0.11 -1.60 9.69 -39.61 -0.38 -1.98 16 23 C -0.10 -1.39 5.88 -104.59 -0.62 -2.00 16 24 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 25 C -0.11 -1.73 9.69 -39.61 -0.38 -2.11 16 26 C -0.10 -1.77 9.56 -39.39 -0.38 -2.14 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.82 7.78 -51.93 -0.40 0.41 16 30 H 0.13 1.50 6.89 -51.93 -0.36 1.14 16 31 H 0.14 2.41 7.91 -51.93 -0.41 2.00 16 32 H 0.04 0.69 5.53 -51.93 -0.29 0.41 16 33 H 0.04 0.72 7.29 -51.93 -0.38 0.34 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -31.41 358.11 -6.43 -37.84 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.23 Total: 3.62 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -3.54 Total: -6.62 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.36 Total: -42.99 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.25 Total: -10.84 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.67 Total: 13.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.41 -6.43 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845320778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.842 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds