Wall clock time and date at job start Tue Mar 31 2020 11:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29950 * 125.30588 * 2 1 4 4 O 1.41870 * 107.41479 * 179.97438 * 3 2 1 5 5 N 1.41880 * 106.39094 * 359.78083 * 4 3 2 6 6 C 1.29951 * 107.41013 * 0.37229 * 5 4 3 7 7 C 1.50703 * 125.30460 * 179.89643 * 6 5 4 8 8 C 1.50697 * 109.46593 * 269.68848 * 7 6 5 9 9 O 1.21291 * 120.00442 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00017 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99938 * 4.73184 * 10 8 7 12 12 C 1.50700 * 109.47139 * 270.00351 * 11 10 8 13 13 H 1.08000 * 119.99916 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00272 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00547 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99640 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47038 * 89.99897 * 16 14 12 18 18 H 1.48499 * 109.47028 * 209.99586 * 16 14 12 19 19 H 1.48496 * 109.47300 * 330.00105 * 16 14 12 20 20 C 1.39932 * 120.00300 * 184.73263 * 10 8 7 21 21 C 1.38869 * 120.06903 * 247.87831 * 20 10 8 22 22 C 1.38106 * 119.92510 * 179.72527 * 21 20 10 23 23 C 1.38283 * 120.07354 * 0.22717 * 22 21 20 24 24 C 1.50706 * 119.92878 * 180.02562 * 23 22 21 25 25 C 1.38279 * 120.14292 * 0.04798 * 23 22 21 26 26 C 1.38118 * 120.06469 * 359.95351 * 25 23 22 27 27 H 1.08995 * 109.47273 * 269.99693 * 1 2 3 28 28 H 1.08996 * 109.46852 * 30.00495 * 1 2 3 29 29 H 1.09007 * 109.47060 * 149.99887 * 1 2 3 30 30 H 1.08991 * 109.47592 * 149.68828 * 7 6 5 31 31 H 1.08999 * 109.47120 * 29.68592 * 7 6 5 32 32 H 1.09001 * 109.47108 * 30.00068 * 11 10 8 33 33 H 1.08994 * 109.47001 * 150.00263 * 11 10 8 34 34 H 0.96997 * 120.00336 * 180.02562 * 15 14 12 35 35 H 1.07995 * 120.03600 * 359.97438 * 21 20 10 36 36 H 1.08003 * 119.96186 * 180.25373 * 22 21 20 37 37 H 1.08995 * 109.46855 * 90.00313 * 24 23 22 38 38 H 1.09005 * 109.46361 * 210.00016 * 24 23 22 39 39 H 1.08998 * 109.47145 * 329.99652 * 24 23 22 40 40 H 1.07994 * 119.97048 * 179.97438 * 25 23 22 41 41 H 1.08005 * 120.03008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0062 6 6 2.3213 -1.1499 0.0005 7 6 1.8209 -2.5714 0.0012 8 6 1.6542 -3.0459 -1.4194 9 8 1.9155 -2.3027 -2.3416 10 7 1.2147 -4.2961 -1.6651 11 6 0.8005 -5.1583 -0.5555 12 6 1.9873 -5.9437 -0.0596 13 1 2.9533 -5.8138 -0.5248 14 6 1.8398 -6.8279 0.9879 15 7 2.8753 -7.5137 1.4204 16 14 0.1691 -7.0519 1.7929 17 1 -0.5731 -8.1352 1.0996 18 1 0.3525 -7.4133 3.2216 19 1 -0.6001 -5.7853 1.6975 20 6 1.1540 -4.7705 -2.9802 21 6 -0.0764 -5.0188 -3.5742 22 6 -0.1331 -5.4817 -4.8741 23 6 1.0338 -5.7024 -5.5826 24 6 0.9682 -6.2069 -7.0011 25 6 2.2608 -5.4615 -4.9920 26 6 2.3242 -4.9986 -3.6923 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 0.8608 -2.6184 0.5150 31 1 2.5397 -3.2094 0.5154 32 1 0.4071 -4.5442 0.2546 33 1 0.0275 -5.8458 -0.8986 34 1 2.7715 -8.1360 2.1571 35 1 -0.9881 -4.8463 -3.0215 36 1 -1.0898 -5.6711 -5.3381 37 1 0.9272 -5.3603 -7.6863 38 1 1.8540 -6.8051 -7.2152 39 1 0.0762 -6.8204 -7.1277 40 1 3.1704 -5.6352 -5.5477 41 1 3.2828 -4.8103 -3.2317 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845320778.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:12 Heat of formation + Delta-G solvation = 62.513460 kcal Electronic energy + Delta-G solvation = -25990.327825 eV Core-core repulsion = 22259.890027 eV Total energy + Delta-G solvation = -3730.437798 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.68330 -41.46944 -39.65161 -37.02069 -35.70085 -34.71378 -34.47339 -32.98883 -31.88922 -30.61296 -29.93843 -29.62547 -27.10710 -24.77625 -23.91726 -23.49459 -22.72658 -21.77767 -20.37082 -19.09769 -18.62005 -18.02735 -17.79358 -16.97192 -16.81017 -16.37352 -16.05243 -15.83483 -15.62910 -15.23039 -14.87590 -14.76738 -14.53904 -14.36264 -14.25346 -14.19399 -13.93314 -13.72237 -13.36542 -13.15274 -12.99017 -12.91167 -12.77608 -12.63338 -12.47606 -12.43125 -12.15215 -12.03436 -11.88559 -11.68295 -11.67461 -11.05743 -10.76488 -10.06218 -9.85955 -9.14408 -8.27227 -6.37482 -0.59699 0.32553 0.48481 0.84677 1.43124 1.45230 1.47174 1.48893 1.56639 1.95952 2.16984 2.38329 2.77365 2.80142 3.07349 3.45152 3.62780 3.85913 3.94855 4.04996 4.09468 4.15220 4.28434 4.42952 4.49701 4.51419 4.56985 4.64215 4.71182 4.77619 4.83627 4.86784 4.91165 5.08675 5.12940 5.17923 5.38951 5.40650 5.54856 5.68146 5.72026 5.80448 6.07231 6.17733 6.42115 6.68819 7.06137 7.28937 8.89126 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008231 B = 0.005751 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.107187 B = 4867.956609 C = 7168.328238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.104 3.896 3 N -0.301 5.301 4 O -0.012 6.012 5 N -0.298 5.298 6 C 0.105 3.895 7 C -0.074 4.074 8 C 0.528 3.472 9 O -0.576 6.576 10 N -0.548 5.548 11 C 0.212 3.788 12 C -0.546 4.546 13 H 0.023 0.977 14 C 0.018 3.982 15 N -0.945 5.945 16 Si 0.940 3.060 17 H -0.271 1.271 18 H -0.289 1.289 19 H -0.212 1.212 20 C 0.127 3.873 21 C -0.123 4.123 22 C -0.109 4.109 23 C -0.096 4.096 24 C -0.107 4.107 25 C -0.121 4.121 26 C -0.131 4.131 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.175 0.825 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 6.226 -7.225 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 N -0.051 5.051 4 O -0.146 6.146 5 N -0.043 5.043 6 C -0.079 4.079 7 C -0.115 4.115 8 C 0.317 3.683 9 O -0.456 6.456 10 N -0.275 5.275 11 C 0.092 3.908 12 C -0.584 4.584 13 H 0.041 0.959 14 C -0.181 4.181 15 N -0.584 5.584 16 Si 0.762 3.238 17 H -0.196 1.196 18 H -0.215 1.215 19 H -0.134 1.134 20 C 0.037 3.963 21 C -0.143 4.143 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.163 4.163 25 C -0.140 4.140 26 C -0.150 4.150 27 H 0.152 0.848 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.192 0.808 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.839 7.350 -7.536 16.602 hybrid contribution 0.395 -1.038 0.768 1.350 sum -12.444 6.312 -6.767 15.508 Atomic orbital electron populations 1.20934 0.80333 1.06668 1.07222 1.25242 1.02299 0.87305 0.93033 1.79814 0.88406 1.20461 1.16396 1.93328 1.21920 1.13573 1.85811 1.79938 1.19349 0.91316 1.13653 1.24276 0.89688 0.98928 0.94984 1.20498 1.07591 0.87531 0.95837 1.20349 0.75977 0.81263 0.90701 1.90697 1.51938 1.55565 1.47408 1.45471 1.63166 1.12798 1.06017 1.19969 0.95112 0.90658 0.85046 1.21448 0.95565 1.24329 1.17079 0.95886 1.25870 1.01176 0.94187 0.96884 1.70071 1.33237 1.27104 1.27977 0.85836 0.79081 0.81549 0.77353 1.19589 1.21532 1.13436 1.17835 0.94091 0.99546 0.84863 1.21421 0.96256 1.00438 0.96155 1.21262 0.99282 0.98988 0.93204 1.20322 0.92352 0.98783 0.98150 1.20812 1.03836 1.01482 0.90218 1.21095 0.99064 1.00107 0.93731 1.21243 0.97103 1.00385 0.96303 0.84848 0.87828 0.87615 0.80778 0.85695 0.90654 0.93098 0.92324 0.83737 0.82218 0.90110 0.91133 0.89726 0.84798 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 10.05 71.24 0.72 -0.65 16 2 C 0.10 2.79 7.19 43.49 0.31 3.10 16 3 N -0.30 -9.67 12.98 -47.15 -0.61 -10.28 16 4 O -0.01 -0.46 13.71 70.17 0.96 0.51 16 5 N -0.30 -11.59 12.98 -47.15 -0.61 -12.20 16 6 C 0.11 3.40 5.68 43.49 0.25 3.65 16 7 C -0.07 -2.26 4.53 29.10 0.13 -2.12 16 8 C 0.53 19.58 7.52 87.66 0.66 20.24 16 9 O -0.58 -24.71 15.80 -3.06 -0.05 -24.75 16 10 N -0.55 -20.60 2.51 -635.30 -1.59 -22.20 16 11 C 0.21 7.99 3.95 85.63 0.34 8.33 16 12 C -0.55 -27.33 9.71 25.60 0.25 -27.08 16 13 H 0.02 1.38 8.06 -2.91 -0.02 1.35 16 14 C 0.02 0.91 5.47 84.66 0.46 1.37 16 15 N -0.94 -54.62 13.96 21.45 0.30 -54.32 16 16 Si 0.94 35.95 27.47 68.60 1.88 37.83 16 17 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 18 H -0.29 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.21 -6.38 6.54 99.48 0.65 -5.73 16 20 C 0.13 4.74 4.75 38.15 0.18 4.92 16 21 C -0.12 -3.65 9.69 22.39 0.22 -3.43 16 22 C -0.11 -2.68 9.69 22.25 0.22 -2.46 16 23 C -0.10 -2.45 5.88 -19.84 -0.12 -2.56 16 24 C -0.11 -1.81 10.01 71.24 0.71 -1.10 16 25 C -0.12 -3.81 9.69 22.25 0.22 -3.60 16 26 C -0.13 -5.11 9.56 22.39 0.21 -4.90 16 27 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 1.35 7.78 -2.38 -0.02 1.33 16 30 H 0.17 3.42 6.89 -2.39 -0.02 3.40 16 31 H 0.13 4.33 7.91 -2.39 -0.02 4.31 16 32 H 0.08 2.32 5.53 -2.39 -0.01 2.30 16 33 H 0.05 1.82 7.29 -2.39 -0.02 1.80 16 34 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.13 8.08 -2.38 -0.02 1.11 16 39 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 40 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.09 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -76.26 358.11 6.03 -70.23 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.00 Total: 21.46 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.76 Total: -6.28 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -2.52 Total: -98.99 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.91 Total: -24.25 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 1.88 Total: 37.83 kcal Total: -76.26 6.03 -70.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845320778.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.745 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds