Wall clock time and date at job start Tue Mar 31 2020 11:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33219 * 126.02070 * 2 1 4 4 C 1.31550 * 109.76001 * 180.26859 * 3 2 1 5 5 O 1.35198 * 125.48886 * 179.70024 * 4 3 2 6 6 N 1.34954 * 109.01470 * 359.72870 * 4 3 2 7 7 H 0.96997 * 126.53545 * 180.02562 * 6 4 3 8 8 C 1.36746 * 126.01612 * 179.80280 * 2 1 3 9 9 C 1.46343 * 126.82594 * 359.97438 * 8 2 1 10 10 O 1.21744 * 120.00474 * 6.68520 * 9 8 2 11 11 N 1.34784 * 119.99844 * 186.67621 * 9 8 2 12 12 C 1.46501 * 119.99908 * 4.30434 * 11 9 8 13 13 C 1.50702 * 109.47138 * 275.76628 * 12 11 9 14 14 H 1.08000 * 119.99949 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00220 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99625 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00094 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47134 * 120.00197 * 17 15 13 20 20 H 1.48510 * 109.47102 * 240.00139 * 17 15 13 21 21 C 1.39835 * 120.00061 * 184.29905 * 11 9 8 22 22 C 1.38892 * 120.07340 * 352.39055 * 21 11 9 23 23 C 1.38103 * 119.92738 * 180.02562 * 22 21 11 24 24 C 1.38278 * 120.07354 * 0.28291 * 23 22 21 25 25 C 1.50701 * 119.92941 * 179.72093 * 24 23 22 26 26 C 1.38293 * 120.14519 * 359.44062 * 24 23 22 27 27 C 1.38109 * 120.06961 * 0.55635 * 26 24 23 28 28 H 1.08998 * 109.47244 * 270.20086 * 1 2 3 29 29 H 1.09005 * 109.46597 * 30.19805 * 1 2 3 30 30 H 1.08999 * 109.47098 * 150.19209 * 1 2 3 31 31 H 0.96701 * 114.00786 * 270.03191 * 5 4 3 32 32 H 1.08997 * 109.47210 * 35.76375 * 12 11 9 33 33 H 1.09000 * 109.47371 * 155.76501 * 12 11 9 34 34 H 0.97003 * 119.99367 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.03465 * 0.02562 * 22 21 11 36 36 H 1.08004 * 119.96158 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.47283 * 89.99839 * 25 24 23 38 38 H 1.08997 * 109.47640 * 209.99770 * 25 24 23 39 39 H 1.09001 * 109.46989 * 329.99579 * 25 24 23 40 40 H 1.07999 * 119.96323 * 180.25546 * 26 24 23 41 41 H 1.07997 * 120.03342 * 179.74822 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5533 0.7091 -0.0058 5 8 4.6150 1.5462 -0.0133 6 7 3.6182 -0.6388 -0.0037 7 1 4.4244 -1.1782 -0.0065 8 6 2.3111 -1.1061 0.0038 9 6 1.8794 -2.5044 0.0091 10 8 0.6992 -2.7776 -0.1122 11 7 2.7884 -3.4898 0.1482 12 6 4.1954 -3.1598 0.3883 13 6 4.8794 -2.8889 -0.9269 14 1 4.3219 -2.9562 -1.8495 15 6 6.2169 -2.5551 -0.9526 16 7 6.8959 -2.4737 0.1708 17 14 7.0649 -2.2199 -2.5829 18 1 6.0884 -2.3781 -3.6905 19 1 7.5991 -0.8345 -2.5874 20 1 8.1814 -3.1816 -2.7670 21 6 2.3885 -4.8270 0.0633 22 6 1.0386 -5.1467 -0.0056 23 6 0.6470 -6.4685 -0.0888 24 6 1.5968 -7.4734 -0.0976 25 6 1.1656 -8.9149 -0.1822 26 6 2.9419 -7.1582 -0.0349 27 6 3.3402 -5.8384 0.0484 28 1 -0.3633 0.0036 1.0276 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3633 -0.8917 -0.5108 31 1 4.9190 1.7881 -0.8988 32 1 4.2582 -2.2736 1.0198 33 1 4.6849 -3.9965 0.8868 34 1 7.8370 -2.2392 0.1527 35 1 0.2961 -4.3626 0.0059 36 1 -0.4025 -6.7177 -0.1428 37 1 1.1026 -9.2146 -1.2283 38 1 1.8930 -9.5426 0.3324 39 1 0.1890 -9.0301 0.2882 40 1 3.6814 -7.9452 -0.0462 41 1 4.3907 -5.5932 0.1015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847400926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:10 Heat of formation + Delta-G solvation = 32.966232 kcal Electronic energy + Delta-G solvation = -26724.585384 eV Core-core repulsion = 22992.866322 eV Total energy + Delta-G solvation = -3731.719062 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.86648 -40.04667 -38.03629 -36.94090 -35.93843 -33.47717 -32.54944 -31.52364 -30.47046 -30.13037 -28.07730 -27.09028 -25.51870 -23.84712 -22.53495 -22.09180 -21.17856 -20.21506 -19.34967 -18.21793 -17.18274 -17.04039 -16.64127 -15.98273 -15.32659 -15.14263 -14.85780 -14.53640 -14.39989 -13.77871 -13.62093 -13.38132 -13.23358 -12.99147 -12.83234 -12.77389 -12.26220 -12.00857 -11.98085 -11.92905 -11.73940 -11.63646 -11.38289 -11.23411 -11.01100 -10.73584 -10.51991 -10.34704 -9.71759 -9.53882 -9.32133 -9.10645 -8.83524 -8.43747 -7.97838 -7.23559 -6.69162 -4.86397 1.45800 1.91998 2.02965 2.87871 2.92190 3.03136 3.07628 3.27659 3.52278 3.69642 3.92191 4.34214 4.38363 4.60253 5.05637 5.23880 5.31336 5.38396 5.48489 5.52057 5.62822 5.75758 5.87470 5.97866 6.03949 6.06526 6.12052 6.24338 6.26492 6.32052 6.44414 6.51326 6.67314 6.85404 6.86288 6.90149 7.06753 7.12980 7.25145 7.30506 7.40432 7.69151 7.83734 8.18112 8.24790 8.31632 8.58417 8.84583 10.31545 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.005937 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.007750 B = 4715.336585 C = 6807.435995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.094 3.906 3 N -0.503 5.503 4 C 0.388 3.612 5 O -0.443 6.443 6 N -0.524 5.524 7 H 0.454 0.546 8 C -0.073 4.073 9 C 0.600 3.400 10 O -0.527 6.527 11 N -0.534 5.534 12 C 0.210 3.790 13 C -0.565 4.565 14 H 0.074 0.926 15 C 0.067 3.933 16 N -0.873 5.873 17 Si 0.900 3.100 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.274 1.274 21 C 0.165 3.835 22 C -0.172 4.172 23 C -0.105 4.105 24 C -0.129 4.129 25 C -0.105 4.105 26 C -0.103 4.103 27 C -0.143 4.143 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.400 0.600 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.277 0.723 35 H 0.181 0.819 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 -3.019 -0.845 6.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.043 4.043 3 N -0.235 5.235 4 C 0.086 3.914 5 O -0.244 6.244 6 N -0.154 5.154 7 H 0.315 0.685 8 C -0.191 4.191 9 C 0.392 3.608 10 O -0.408 6.408 11 N -0.252 5.252 12 C 0.090 3.910 13 C -0.603 4.603 14 H 0.092 0.908 15 C -0.141 4.141 16 N -0.509 5.509 17 Si 0.726 3.274 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.199 1.199 21 C 0.069 3.931 22 C -0.191 4.191 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.162 4.162 26 C -0.121 4.121 27 C -0.164 4.164 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.257 0.743 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.197 0.803 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.362 -2.238 -0.186 6.746 hybrid contribution 2.002 -0.779 -1.326 2.524 sum -4.360 -3.017 -1.512 5.514 Atomic orbital electron populations 1.20255 0.86596 1.03502 1.02674 1.20801 0.96444 0.86149 1.00930 1.70099 0.98929 1.30681 1.23752 1.20226 0.87035 0.80006 1.04113 1.84783 1.43740 1.61971 1.33905 1.45802 1.10956 1.07787 1.50828 0.68523 1.20461 0.84014 0.94329 1.20255 1.16848 0.84776 0.83066 0.76084 1.90372 1.16920 1.81547 1.51916 1.45726 1.11033 1.03522 1.64935 1.20008 0.74748 0.98553 0.97709 1.21604 0.95382 1.50094 0.93262 0.90804 1.25120 0.96793 0.94370 0.97782 1.69933 1.10212 1.44532 1.26180 0.86348 0.79815 0.78594 0.82652 1.19100 1.20135 1.19905 1.17998 0.93423 0.83160 0.98513 1.22725 0.96068 0.98444 1.01893 1.20916 0.98549 0.92292 1.00631 1.19808 0.93619 0.95433 1.04118 1.20672 1.01123 0.92824 1.01535 1.20720 0.95016 0.95520 1.00866 1.21059 0.99847 0.91781 1.03668 0.91161 0.91377 0.89098 0.74297 0.94090 0.92171 0.91346 0.80268 0.86585 0.91982 0.92195 0.92180 0.86470 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 9.95 36.01 0.36 -0.77 16 2 C 0.09 1.81 7.14 -82.53 -0.59 1.22 16 3 N -0.50 -9.92 11.22 -10.82 -0.12 -10.04 16 4 C 0.39 7.60 9.43 -89.57 -0.84 6.76 16 5 O -0.44 -7.43 13.62 -17.29 -0.24 -7.66 16 6 N -0.52 -10.93 4.84 -10.91 -0.05 -10.98 16 7 H 0.45 9.98 3.33 -40.82 -0.14 9.84 16 8 C -0.07 -1.50 6.59 -81.98 -0.54 -2.04 16 9 C 0.60 12.62 7.53 -13.00 -0.10 12.52 16 10 O -0.53 -10.80 11.17 5.15 0.06 -10.74 16 11 N -0.53 -11.32 2.70 -116.31 -0.31 -11.63 16 12 C 0.21 4.68 4.16 -5.19 -0.02 4.66 16 13 C -0.56 -13.17 7.09 -34.44 -0.24 -13.41 16 14 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.07 1.54 4.98 -17.82 -0.09 1.46 16 16 N -0.87 -21.05 13.29 55.43 0.74 -20.31 16 17 Si 0.90 18.38 29.54 -169.99 -5.02 13.36 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.16 3.30 6.49 -83.72 -0.54 2.76 16 22 C -0.17 -3.19 9.04 -39.39 -0.36 -3.55 16 23 C -0.11 -1.67 9.69 -39.62 -0.38 -2.06 16 24 C -0.13 -1.93 5.88 -104.59 -0.62 -2.55 16 25 C -0.10 -1.18 10.01 36.01 0.36 -0.82 16 26 C -0.10 -1.65 9.69 -39.61 -0.38 -2.03 16 27 C -0.14 -2.69 9.15 -39.39 -0.36 -3.05 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.44 6.35 -51.93 -0.33 1.11 16 31 H 0.40 4.60 9.06 45.56 0.41 5.01 16 32 H 0.04 0.96 5.42 -51.93 -0.28 0.68 16 33 H 0.06 1.38 6.22 -51.93 -0.32 1.06 16 34 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 35 H 0.18 3.45 4.54 -56.18 -0.26 3.20 16 36 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.14 2.66 6.25 -52.49 -0.33 2.33 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -26.74 338.52 -7.94 -34.67 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -3.74 Total: 19.14 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.35 Total: -0.91 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.25 Total: -52.97 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.18 Total: -18.40 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.74 -7.94 -34.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847400926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.641 kcal (2) G-P(sol) polarization free energy of solvation -26.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds