Wall clock time and date at job start Tue Mar 31 2020 11:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33219 * 126.02070 * 2 1 4 4 C 1.31550 * 109.76001 * 180.26859 * 3 2 1 5 5 O 1.35198 * 125.48886 * 179.70024 * 4 3 2 6 6 N 1.34954 * 109.01470 * 359.72870 * 4 3 2 7 7 H 0.96997 * 126.53545 * 180.02562 * 6 4 3 8 8 C 1.36746 * 126.01612 * 179.80280 * 2 1 3 9 9 C 1.46343 * 126.82594 * 359.97438 * 8 2 1 10 10 O 1.21744 * 120.00474 * 6.68520 * 9 8 2 11 11 N 1.34784 * 119.99844 * 186.67621 * 9 8 2 12 12 C 1.46501 * 119.99908 * 4.30434 * 11 9 8 13 13 C 1.50702 * 109.47138 * 275.76628 * 12 11 9 14 14 H 1.08000 * 119.99949 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00220 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99625 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00094 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47134 * 120.00197 * 17 15 13 20 20 H 1.48510 * 109.47102 * 240.00139 * 17 15 13 21 21 C 1.39835 * 120.00061 * 184.29905 * 11 9 8 22 22 C 1.38892 * 120.07340 * 352.39055 * 21 11 9 23 23 C 1.38103 * 119.92738 * 180.02562 * 22 21 11 24 24 C 1.38278 * 120.07354 * 0.28291 * 23 22 21 25 25 C 1.50701 * 119.92941 * 179.72093 * 24 23 22 26 26 C 1.38293 * 120.14519 * 359.44062 * 24 23 22 27 27 C 1.38109 * 120.06961 * 0.55635 * 26 24 23 28 28 H 1.08998 * 109.47244 * 270.20086 * 1 2 3 29 29 H 1.09005 * 109.46597 * 30.19805 * 1 2 3 30 30 H 1.08999 * 109.47098 * 150.19209 * 1 2 3 31 31 H 0.96701 * 114.00786 * 270.03191 * 5 4 3 32 32 H 1.08997 * 109.47210 * 35.76375 * 12 11 9 33 33 H 1.09000 * 109.47371 * 155.76501 * 12 11 9 34 34 H 0.97003 * 119.99367 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.03465 * 0.02562 * 22 21 11 36 36 H 1.08004 * 119.96158 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.47283 * 89.99839 * 25 24 23 38 38 H 1.08997 * 109.47640 * 209.99770 * 25 24 23 39 39 H 1.09001 * 109.46989 * 329.99579 * 25 24 23 40 40 H 1.07999 * 119.96323 * 180.25546 * 26 24 23 41 41 H 1.07997 * 120.03342 * 179.74822 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5533 0.7091 -0.0058 5 8 4.6150 1.5462 -0.0133 6 7 3.6182 -0.6388 -0.0037 7 1 4.4244 -1.1782 -0.0065 8 6 2.3111 -1.1061 0.0038 9 6 1.8794 -2.5044 0.0091 10 8 0.6992 -2.7776 -0.1122 11 7 2.7884 -3.4898 0.1482 12 6 4.1954 -3.1598 0.3883 13 6 4.8794 -2.8889 -0.9269 14 1 4.3219 -2.9562 -1.8495 15 6 6.2169 -2.5551 -0.9526 16 7 6.8959 -2.4737 0.1708 17 14 7.0649 -2.2199 -2.5829 18 1 6.0884 -2.3781 -3.6905 19 1 7.5991 -0.8345 -2.5874 20 1 8.1814 -3.1816 -2.7670 21 6 2.3885 -4.8270 0.0633 22 6 1.0386 -5.1467 -0.0056 23 6 0.6470 -6.4685 -0.0888 24 6 1.5968 -7.4734 -0.0976 25 6 1.1656 -8.9149 -0.1822 26 6 2.9419 -7.1582 -0.0349 27 6 3.3402 -5.8384 0.0484 28 1 -0.3633 0.0036 1.0276 29 1 -0.3633 0.8883 -0.5169 30 1 -0.3633 -0.8917 -0.5108 31 1 4.9190 1.7881 -0.8988 32 1 4.2582 -2.2736 1.0198 33 1 4.6849 -3.9965 0.8868 34 1 7.8370 -2.2392 0.1527 35 1 0.2961 -4.3626 0.0059 36 1 -0.4025 -6.7177 -0.1428 37 1 1.1026 -9.2146 -1.2283 38 1 1.8930 -9.5426 0.3324 39 1 0.1890 -9.0301 0.2882 40 1 3.6814 -7.9452 -0.0462 41 1 4.3907 -5.5932 0.1015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847400926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:09 Heat of formation + Delta-G solvation = 15.547322 kcal Electronic energy + Delta-G solvation = -26725.340724 eV Core-core repulsion = 22992.866322 eV Total energy + Delta-G solvation = -3732.474403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.40066 -41.54562 -39.42732 -38.33267 -37.54046 -35.13443 -34.10571 -32.86556 -31.82741 -31.52316 -29.79713 -28.42356 -26.83832 -25.55981 -23.98381 -23.51179 -22.63654 -21.63359 -20.84765 -19.71133 -18.98934 -18.51219 -18.22769 -17.47762 -16.87377 -16.64240 -16.43179 -16.07359 -15.76406 -15.18371 -14.99192 -14.69399 -14.50466 -14.44950 -14.35677 -14.23243 -13.57531 -13.43717 -13.31444 -13.24891 -13.02762 -12.99739 -12.86798 -12.75942 -12.53700 -12.32325 -12.02338 -11.88690 -11.25996 -11.09207 -10.89752 -10.83032 -10.35092 -9.79317 -9.49166 -8.74363 -8.43572 -6.72432 -0.03197 0.55981 0.62374 1.27342 1.34482 1.42447 1.45474 1.74070 1.96608 2.14097 2.23210 2.76050 2.92462 2.98164 3.51247 3.94326 4.04977 4.10855 4.11758 4.26037 4.33977 4.46207 4.59380 4.68242 4.70843 4.80781 4.88921 4.93961 4.98246 4.99771 5.09376 5.20099 5.23738 5.38195 5.45427 5.51719 5.57523 5.58988 5.71182 5.80621 5.94629 6.21694 6.28840 6.47604 6.70123 6.73901 6.97591 7.03719 8.52036 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.005937 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.007750 B = 4715.336585 C = 6807.435995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.098 3.902 3 N -0.511 5.511 4 C 0.392 3.608 5 O -0.445 6.445 6 N -0.536 5.536 7 H 0.448 0.552 8 C -0.101 4.101 9 C 0.592 3.408 10 O -0.529 6.529 11 N -0.539 5.539 12 C 0.226 3.774 13 C -0.565 4.565 14 H 0.055 0.945 15 C 0.038 3.962 16 N -0.897 5.897 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.262 1.262 20 H -0.272 1.272 21 C 0.130 3.870 22 C -0.184 4.184 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.103 4.103 26 C -0.103 4.103 27 C -0.160 4.160 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.424 0.576 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.281 0.719 35 H 0.172 0.828 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.143 0.857 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.684 -4.002 -1.524 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.039 4.039 3 N -0.243 5.243 4 C 0.090 3.910 5 O -0.249 6.249 6 N -0.166 5.166 7 H 0.307 0.693 8 C -0.218 4.218 9 C 0.385 3.615 10 O -0.410 6.410 11 N -0.258 5.258 12 C 0.105 3.895 13 C -0.603 4.603 14 H 0.073 0.927 15 C -0.168 4.168 16 N -0.532 5.532 17 Si 0.777 3.223 18 H -0.200 1.200 19 H -0.187 1.187 20 H -0.197 1.197 21 C 0.035 3.965 22 C -0.204 4.204 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.159 4.159 26 C -0.121 4.121 27 C -0.180 4.180 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.285 0.715 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.188 0.812 36 H 0.164 0.836 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.161 0.839 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.166 -3.222 -0.877 7.906 hybrid contribution 2.225 -0.522 -1.100 2.536 sum -4.941 -3.745 -1.976 6.507 Atomic orbital electron populations 1.20348 0.84145 1.04287 1.03851 1.21403 0.97930 0.85464 0.99083 1.70172 0.98954 1.30649 1.24511 1.20473 0.87719 0.79920 1.02901 1.84737 1.42890 1.61187 1.36075 1.45784 1.10832 1.08270 1.51698 0.69291 1.20646 0.84361 0.94667 1.22144 1.16989 0.84924 0.83319 0.76279 1.90360 1.16654 1.81726 1.52274 1.45683 1.10421 1.04345 1.65371 1.19682 0.75573 0.97219 0.96996 1.21490 0.95643 1.50441 0.92728 0.92654 1.25661 0.96984 0.93909 1.00204 1.69993 1.10585 1.45059 1.27607 0.85557 0.78569 0.79099 0.79114 1.19987 1.18656 1.19718 1.18317 0.94538 0.82817 1.00783 1.22716 0.95099 0.99728 1.02835 1.21274 1.00406 0.91234 0.99294 1.20278 0.92803 0.97532 1.01416 1.20749 1.02405 0.89893 1.02870 1.21054 0.96492 0.94797 0.99797 1.21056 0.98777 0.93060 1.05117 0.89664 0.89275 0.89507 0.71542 0.95355 0.93651 0.90970 0.81216 0.83589 0.90582 0.90744 0.90438 0.83946 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.07 9.95 71.24 0.71 -1.36 16 2 C 0.10 3.77 7.14 42.00 0.30 4.07 16 3 N -0.51 -19.87 11.22 -301.64 -3.38 -23.26 16 4 C 0.39 15.32 9.43 179.98 1.70 17.01 16 5 O -0.44 -14.54 13.62 -84.78 -1.15 -15.69 16 6 N -0.54 -22.92 4.84 -300.14 -1.45 -24.38 16 7 H 0.45 20.34 3.33 -92.71 -0.31 20.03 16 8 C -0.10 -4.30 6.59 39.80 0.26 -4.04 16 9 C 0.59 25.83 7.53 86.35 0.65 26.48 16 10 O -0.53 -22.22 11.17 -4.49 -0.05 -22.27 16 11 N -0.54 -23.97 2.70 -640.07 -1.73 -25.70 16 12 C 0.23 10.61 4.16 85.63 0.36 10.97 16 13 C -0.56 -27.28 7.09 25.60 0.18 -27.10 16 14 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 15 C 0.04 1.77 4.98 84.65 0.42 2.19 16 16 N -0.90 -43.89 13.29 21.45 0.28 -43.60 16 17 Si 0.95 37.69 29.54 68.60 2.03 39.72 16 18 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 21 C 0.13 5.39 6.49 38.18 0.25 5.64 16 22 C -0.18 -6.88 9.04 22.39 0.20 -6.68 16 23 C -0.10 -3.10 9.69 22.25 0.22 -2.89 16 24 C -0.12 -3.28 5.88 -19.84 -0.12 -3.40 16 25 C -0.10 -1.90 10.01 71.24 0.71 -1.18 16 26 C -0.10 -3.19 9.69 22.25 0.22 -2.97 16 27 C -0.16 -6.16 9.15 22.40 0.21 -5.95 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.09 2.69 6.35 -2.39 -0.02 2.68 16 31 H 0.42 9.16 9.06 -74.06 -0.67 8.49 16 32 H 0.03 1.41 5.42 -2.39 -0.01 1.40 16 33 H 0.05 2.23 6.22 -2.39 -0.01 2.21 16 34 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 35 H 0.17 6.65 4.54 -61.46 -0.28 6.37 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.08 1.20 8.08 -2.39 -0.02 1.19 16 40 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.12 4.85 6.25 -2.91 -0.02 4.83 16 Total: -1.00 -58.42 338.52 0.67 -57.76 By element: Atomic # 1 Polarization: 46.78 SS G_CDS: -0.14 Total: 46.64 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.26 Total: 10.78 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -6.28 Total: -116.94 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.21 Total: -37.96 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -58.42 0.67 -57.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847400926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.303 kcal (2) G-P(sol) polarization free energy of solvation -58.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds