Wall clock time and date at job start Tue Mar 31 2020 11:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30258 * 125.70579 * 2 1 4 4 N 1.39989 * 109.74935 * 179.97438 * 3 2 1 5 5 H 0.97002 * 125.90971 * 180.02562 * 4 3 2 6 6 C 1.37079 * 108.18324 * 0.02562 * 4 3 2 7 7 N 1.32536 * 133.44585 * 180.02562 * 6 4 3 8 8 C 1.31441 * 121.99529 * 179.97438 * 7 6 4 9 9 C 1.50703 * 119.16288 * 180.02562 * 8 7 6 10 10 C 1.38693 * 121.67621 * 359.78032 * 8 7 6 11 11 C 1.39355 * 119.35046 * 0.46372 * 10 8 7 12 12 C 1.47752 * 121.09261 * 179.79604 * 11 10 8 13 13 O 1.21463 * 120.00358 * 143.15966 * 12 11 10 14 14 O 1.34726 * 119.99898 * 322.87902 * 12 11 10 15 15 C 1.45200 * 117.00139 * 175.20480 * 14 12 11 16 16 C 1.52999 * 109.47519 * 184.93164 * 15 14 12 17 17 C 1.50699 * 115.55069 * 306.13714 * 16 15 14 18 18 H 1.08000 * 120.00374 * 144.82405 * 17 16 15 19 19 C 1.37882 * 119.99752 * 324.82153 * 17 16 15 20 20 N 1.31509 * 119.99885 * 1.04695 * 19 17 16 21 21 Si 1.86799 * 120.00075 * 181.04248 * 19 17 16 22 22 H 1.48501 * 109.46855 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47089 * 120.00018 * 21 19 17 24 24 H 1.48496 * 109.47102 * 240.00403 * 21 19 17 25 25 C 1.52998 * 117.49951 * 160.45737 * 16 15 14 26 26 C 1.53005 * 117.49494 * 91.79892 * 16 15 14 27 27 C 1.40942 * 106.34235 * 359.97438 * 6 4 3 28 28 H 1.08996 * 109.47335 * 263.98728 * 1 2 3 29 29 H 1.09001 * 109.46784 * 23.98745 * 1 2 3 30 30 H 1.08999 * 109.46708 * 143.98275 * 1 2 3 31 31 H 1.08999 * 109.46636 * 90.00386 * 9 8 7 32 32 H 1.08997 * 109.46956 * 210.00208 * 9 8 7 33 33 H 1.08998 * 109.47231 * 330.00497 * 9 8 7 34 34 H 1.07994 * 120.32640 * 180.27881 * 10 8 7 35 35 H 1.09002 * 109.46957 * 304.93677 * 15 14 12 36 36 H 1.09001 * 109.47149 * 64.92964 * 15 14 12 37 37 H 0.97000 * 120.00285 * 185.00419 * 20 19 17 38 38 H 1.08999 * 117.49897 * 0.02562 * 25 16 15 39 39 H 1.09005 * 117.49182 * 145.02412 * 25 16 15 40 40 H 1.09003 * 117.49834 * 214.98246 * 26 16 15 41 41 H 1.08994 * 117.50283 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2672 1.0577 0.0000 4 7 3.6132 0.6729 0.0006 5 1 4.3762 1.2719 0.0011 6 6 3.6665 -0.6969 0.0004 7 7 4.6634 -1.5702 0.0012 8 6 4.4527 -2.8676 0.0012 9 6 5.6340 -3.8034 0.0027 10 6 3.1709 -3.3973 0.0050 11 6 2.0757 -2.5356 -0.0010 12 6 0.6937 -3.0581 -0.0017 13 8 -0.1735 -2.4829 0.6247 14 8 0.3942 -4.1696 -0.7019 15 6 -0.9564 -4.6865 -0.5719 16 6 -1.0724 -6.0080 -1.3342 17 6 -0.6487 -5.9639 -2.7797 18 1 -0.1603 -6.8177 -3.2256 19 6 -0.8846 -4.8334 -3.5330 20 7 -1.4608 -3.7862 -2.9845 21 14 -0.3858 -4.7893 -5.3326 22 1 0.2384 -6.0842 -5.7051 23 1 -1.5876 -4.5595 -6.1739 24 1 0.5881 -3.6894 -5.5495 25 6 -2.2308 -6.9370 -0.9655 26 6 -0.8003 -7.2978 -0.5573 27 6 2.3304 -1.1457 0.0003 28 1 -0.3634 -0.1076 1.0220 29 1 -0.3633 0.9389 -0.4178 30 1 -0.3633 -0.8312 -0.6043 31 1 5.9175 -4.0288 1.0307 32 1 5.3667 -4.7267 -0.5112 33 1 6.4720 -3.3315 -0.5102 34 1 3.0230 -4.4671 0.0095 35 1 -1.1817 -4.8536 0.4814 36 1 -1.6626 -3.9660 -0.9845 37 1 -1.6927 -3.0187 -3.5305 38 1 -2.9106 -6.6065 -0.1802 39 1 -2.6863 -7.5165 -1.7686 40 1 -0.3152 -8.1146 -1.0920 41 1 -0.5383 -7.2049 0.4966 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849721646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:05 Heat of formation + Delta-G solvation = 44.412345 kcal Electronic energy + Delta-G solvation = -26500.674303 eV Core-core repulsion = 22769.451582 eV Total energy + Delta-G solvation = -3731.222721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84540 -39.50787 -38.35914 -36.83492 -35.13152 -33.66677 -32.22552 -32.14129 -31.36588 -27.80971 -27.51606 -26.75725 -25.50691 -24.28116 -22.53387 -21.33862 -20.88606 -19.65671 -19.23885 -18.14094 -17.22977 -17.09956 -16.57860 -15.93099 -15.48194 -15.20128 -14.84392 -14.50436 -14.18535 -13.91969 -13.79238 -13.22428 -13.02326 -12.74240 -12.68387 -12.51090 -12.34069 -12.04271 -11.93972 -11.64289 -11.44630 -11.08215 -10.91569 -10.83911 -10.55342 -10.47524 -10.36732 -10.22110 -9.75682 -9.50548 -9.39050 -9.02715 -8.83555 -8.79137 -8.43337 -8.27529 -6.05498 -4.16333 0.39951 1.15385 2.33228 2.38471 2.90840 3.22737 3.26768 3.33270 3.35673 3.76076 4.09769 4.32406 4.44357 4.66071 4.67341 4.84518 4.99130 5.24614 5.36972 5.44254 5.48720 5.50805 5.66461 5.83502 5.90259 5.96674 5.97770 6.02975 6.06881 6.14746 6.37483 6.39278 6.54884 6.58044 6.60655 6.73953 6.90731 7.06638 7.18297 7.37766 7.38110 7.42019 7.86022 7.86172 8.25927 8.47917 8.81568 9.46321 10.91647 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.004716 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.472340 B = 5935.980300 C = 6138.267340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.131 3.869 3 N -0.246 5.246 4 N -0.494 5.494 5 H 0.444 0.556 6 C 0.318 3.682 7 N -0.498 5.498 8 C 0.195 3.805 9 C -0.104 4.104 10 C -0.162 4.162 11 C 0.029 3.971 12 C 0.495 3.505 13 O -0.501 6.501 14 O -0.306 6.306 15 C 0.119 3.881 16 C 0.045 3.955 17 C -0.478 4.478 18 H 0.063 0.937 19 C 0.074 3.926 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.194 4.194 26 C -0.209 4.209 27 C -0.188 4.188 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.157 0.843 35 H 0.025 0.975 36 H 0.121 0.879 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 3.310 6.588 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.045 4.045 3 N -0.063 5.063 4 N -0.212 5.212 5 H 0.290 0.710 6 C 0.076 3.924 7 N -0.214 5.214 8 C 0.046 3.954 9 C -0.162 4.162 10 C -0.184 4.184 11 C 0.017 3.983 12 C 0.338 3.662 13 O -0.392 6.392 14 O -0.219 6.219 15 C 0.046 3.954 16 C 0.044 3.956 17 C -0.515 4.515 18 H 0.081 0.919 19 C -0.128 4.128 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.232 4.232 26 C -0.247 4.247 27 C -0.198 4.198 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.175 0.825 35 H 0.043 0.957 36 H 0.138 0.862 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.894 5.352 6.687 13.086 hybrid contribution -0.262 -0.718 -0.905 1.184 sum 9.632 4.634 5.783 12.153 Atomic orbital electron populations 1.20524 0.84518 1.03634 1.04719 1.22458 0.97846 0.88209 0.96007 1.76844 0.85940 1.22287 1.21258 1.45842 1.06431 1.01940 1.66955 0.70964 1.18877 0.89585 0.86681 0.97240 1.66253 1.34183 1.02418 1.18583 1.21164 0.94521 0.88713 0.90985 1.20813 0.94598 0.97182 1.03591 1.22099 0.91283 1.01791 1.03218 1.19152 0.92388 0.91067 0.95663 1.20750 0.87454 0.80425 0.77536 1.90779 1.48478 1.58103 1.41821 1.86594 1.36480 1.37912 1.60899 1.22989 0.79831 0.97250 0.95337 1.18934 0.96849 0.85247 0.94555 1.20492 1.38381 0.99997 0.92669 0.91925 1.24924 0.94452 0.94821 0.98628 1.69749 1.41725 1.05786 1.34919 0.86468 0.78375 0.78183 0.84623 1.19645 1.20913 1.20928 1.22988 0.90805 1.07043 1.02346 1.22969 0.99801 1.02976 0.98914 1.19145 0.94246 0.93466 1.12974 0.89056 0.91127 0.88643 0.89755 0.89523 0.90117 0.82500 0.95718 0.86190 0.92772 0.91382 0.89756 0.90276 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 8.57 36.01 0.31 -0.90 16 2 C 0.13 2.24 7.22 -82.18 -0.59 1.64 16 3 N -0.25 -3.93 12.57 33.83 0.43 -3.50 16 4 N -0.49 -7.04 7.43 31.14 0.23 -6.81 16 5 H 0.44 4.73 8.96 -182.68 -1.64 3.10 16 6 C 0.32 5.13 8.48 -156.06 -1.32 3.80 16 7 N -0.50 -7.47 10.25 -8.59 -0.09 -7.56 16 8 C 0.20 2.64 6.78 -82.59 -0.56 2.09 16 9 C -0.10 -0.95 10.14 36.01 0.37 -0.58 16 10 C -0.16 -2.45 9.37 -39.00 -0.37 -2.82 16 11 C 0.03 0.53 5.87 -104.43 -0.61 -0.08 16 12 C 0.50 10.14 7.04 34.62 0.24 10.39 16 13 O -0.50 -10.55 12.84 -19.24 -0.25 -10.79 16 14 O -0.31 -6.91 9.64 -40.56 -0.39 -7.30 16 15 C 0.12 2.75 4.39 37.16 0.16 2.92 16 16 C 0.04 1.05 2.19 -155.66 -0.34 0.71 16 17 C -0.48 -12.37 8.79 -34.44 -0.30 -12.67 16 18 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.07 1.93 5.31 -17.82 -0.09 1.83 16 20 N -0.88 -23.41 10.28 55.43 0.57 -22.84 16 21 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.19 -4.07 9.96 -26.69 -0.27 -4.34 16 26 C -0.21 -4.26 9.92 -26.69 -0.26 -4.52 16 27 C -0.19 -3.34 5.98 -106.63 -0.64 -3.98 16 28 H 0.09 1.41 7.77 -51.93 -0.40 1.00 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 1.77 6.09 -51.93 -0.32 1.45 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.67 8.07 -51.93 -0.42 0.26 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.02 0.53 8.04 -51.93 -0.42 0.12 16 36 H 0.12 3.07 5.94 -51.93 -0.31 2.76 16 37 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -29.33 349.95 -9.96 -39.29 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.43 Total: 5.23 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -4.28 Total: -6.52 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 1.14 Total: -40.70 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.64 Total: -18.09 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.33 -9.96 -39.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849721646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.701 kcal (2) G-P(sol) polarization free energy of solvation -29.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds