Wall clock time and date at job start Tue Mar 31 2020 11:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40578 * 119.82591 * 2 1 4 4 C 1.35888 * 119.73075 * 179.97438 * 3 2 1 5 5 C 1.41182 * 119.34891 * 359.97438 * 4 3 2 6 6 N 1.32233 * 132.05024 * 180.34234 * 5 4 3 7 7 C 1.34589 * 109.02769 * 180.08955 * 6 5 4 8 8 C 1.47585 * 125.92288 * 179.85899 * 7 6 5 9 9 O 1.21585 * 120.00629 * 179.69278 * 8 7 6 10 10 N 1.34783 * 119.99655 * 359.69702 * 8 7 6 11 11 C 1.47418 * 125.65054 * 0.02562 * 10 8 7 12 12 C 1.54911 * 104.83336 * 155.83119 * 11 10 8 13 13 C 1.55157 * 101.57885 * 37.01031 * 12 11 10 14 14 O 1.42895 * 110.71700 * 82.86763 * 13 12 11 15 15 C 1.50702 * 110.71876 * 205.95912 * 13 12 11 16 16 H 1.08000 * 120.00221 * 117.74066 * 15 13 12 17 17 C 1.37875 * 119.99852 * 297.74202 * 15 13 12 18 18 N 1.31522 * 120.00246 * 185.34425 * 17 15 13 19 19 Si 1.86803 * 120.00285 * 5.33585 * 17 15 13 20 20 H 1.48497 * 109.47024 * 84.75141 * 19 17 15 21 21 H 1.48503 * 109.47388 * 204.74772 * 19 17 15 22 22 H 1.48502 * 109.47015 * 324.75025 * 19 17 15 23 23 C 1.47025 * 125.64656 * 179.97438 * 10 8 7 24 24 C 1.36577 * 108.15916 * 359.60128 * 7 6 5 25 25 N 1.36200 * 107.09573 * 0.23957 * 24 7 6 26 26 C 1.34845 * 119.83185 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46756 * 90.00580 * 1 2 3 28 28 H 1.09003 * 109.46846 * 210.00431 * 1 2 3 29 29 H 1.09001 * 109.47540 * 329.99910 * 1 2 3 30 30 H 1.08007 * 120.13307 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.32647 * 180.02562 * 4 3 2 32 32 H 1.09002 * 110.36695 * 36.99423 * 11 10 8 33 33 H 1.08999 * 110.46552 * 274.71710 * 11 10 8 34 34 H 1.09006 * 110.99980 * 278.93912 * 12 11 10 35 35 H 1.08993 * 111.04000 * 155.10216 * 12 11 10 36 36 H 0.96697 * 114.00213 * 179.97438 * 14 13 12 37 37 H 0.96990 * 120.00336 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.87977 * 61.68264 * 23 10 8 39 39 H 1.09000 * 109.87831 * 300.51764 * 23 10 8 40 40 H 1.07997 * 126.45486 * 180.28084 * 24 7 6 41 41 H 1.08002 * 119.67679 * 0.04634 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2196 0.0000 4 6 3.5651 1.2173 0.0005 5 6 4.2550 -0.0144 0.0016 6 7 5.5445 -0.3073 0.0082 7 6 5.6906 -1.6453 0.0040 8 6 6.9727 -2.3763 0.0059 9 8 6.9793 -3.5921 0.0073 10 7 8.1362 -1.6960 0.0062 11 6 8.2734 -0.2282 0.0053 12 6 9.6702 0.0399 0.6191 13 6 10.4975 -1.1361 0.0362 14 8 10.9510 -0.8297 -1.2838 15 6 11.6616 -1.4659 0.9346 16 1 11.7271 -2.4390 1.3985 17 6 12.6431 -0.5252 1.1645 18 7 13.7110 -0.8459 1.8620 19 14 12.4563 1.2049 0.4851 20 1 11.6461 2.0208 1.4247 21 1 13.7978 1.8212 0.3245 22 1 11.7766 1.1479 -0.8340 23 6 9.4789 -2.2950 0.0086 24 6 4.4467 -2.2093 0.0035 25 7 3.5445 -1.1890 0.0020 26 6 2.1778 -1.1698 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6655 2.1546 -0.0004 31 1 4.1119 2.1486 0.0009 32 1 7.4956 0.2258 0.6193 33 1 8.2259 0.1583 -1.0128 34 1 9.6345 -0.0091 1.7075 35 1 10.0663 0.9992 0.2861 36 1 11.4738 -1.5327 -1.6932 37 1 14.4013 -0.1841 2.0241 38 1 9.6203 -2.8914 -0.8928 39 1 9.6044 -2.9201 0.8927 40 1 4.2210 -3.2654 0.0048 41 1 1.6298 -2.1004 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862099958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:57 Heat of formation + Delta-G solvation = 25.291166 kcal Electronic energy + Delta-G solvation = -25871.216304 eV Core-core repulsion = 22139.164427 eV Total energy + Delta-G solvation = -3732.051878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.03627 -39.53449 -38.03641 -37.24778 -34.54244 -33.92090 -32.48578 -32.36034 -30.21861 -29.17391 -28.36869 -27.24537 -25.47286 -23.98375 -22.94773 -22.30096 -21.88269 -19.71096 -19.13380 -18.08507 -17.41728 -17.07624 -16.40727 -16.27863 -15.48449 -15.27380 -14.92170 -14.85987 -14.65746 -14.42225 -14.08536 -13.93827 -13.20953 -13.16756 -12.97239 -12.85251 -12.64600 -12.28086 -12.15331 -11.96824 -11.68734 -11.49719 -11.28751 -11.24627 -11.00310 -10.53974 -10.30288 -10.19959 -10.00269 -9.56354 -8.96991 -8.95644 -8.69380 -8.43560 -8.18478 -7.99297 -6.17993 -4.29283 0.36291 0.95620 2.04330 2.24787 3.11419 3.34479 3.41149 3.45895 3.64591 3.70459 3.86735 4.13427 4.29585 4.42252 4.46089 4.63037 4.88730 4.97960 5.06582 5.12141 5.12564 5.18771 5.35441 5.45647 5.49615 5.56030 5.69598 5.82935 5.85470 5.93718 6.12916 6.15384 6.18649 6.41587 6.55695 6.68240 6.72712 6.81105 6.85599 7.22288 7.50304 7.54292 8.00363 8.23108 8.52180 8.78791 8.95973 9.45321 10.92364 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.003201 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.078164 B = 8743.910455 C = 9493.562043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.107 4.107 3 C -0.103 4.103 4 C -0.067 4.067 5 C 0.216 3.784 6 N -0.455 5.455 7 C 0.021 3.979 8 C 0.604 3.396 9 O -0.550 6.550 10 N -0.589 5.589 11 C 0.107 3.893 12 C -0.129 4.129 13 C 0.215 3.785 14 O -0.573 6.573 15 C -0.551 4.551 16 H 0.079 0.921 17 C 0.089 3.911 18 N -0.887 5.887 19 Si 0.875 3.125 20 H -0.282 1.282 21 H -0.301 1.301 22 H -0.228 1.228 23 C 0.096 3.904 24 C -0.022 4.022 25 N -0.363 5.363 26 C 0.049 3.951 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.366 0.634 37 H 0.267 0.733 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.195 0.805 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.095 4.210 -4.376 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.127 4.127 4 C -0.087 4.087 5 C -0.029 4.029 6 N -0.176 5.176 7 C -0.112 4.112 8 C 0.390 3.610 9 O -0.429 6.429 10 N -0.319 5.319 11 C -0.016 4.016 12 C -0.167 4.167 13 C 0.175 3.825 14 O -0.379 6.379 15 C -0.588 4.588 16 H 0.097 0.903 17 C -0.117 4.117 18 N -0.523 5.523 19 Si 0.703 3.297 20 H -0.209 1.209 21 H -0.229 1.229 22 H -0.151 1.151 23 C -0.026 4.026 24 C -0.157 4.157 25 N -0.034 5.034 26 C -0.072 4.072 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.172 0.828 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.213 0.787 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.212 0.788 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.609 4.611 -4.183 27.327 hybrid contribution -0.259 -0.208 -0.253 0.418 sum -26.868 4.404 -4.436 27.585 Atomic orbital electron populations 1.20685 0.88953 1.03525 1.02949 1.19491 0.97270 0.91708 1.02532 1.20969 0.93381 0.98115 1.00259 1.20351 0.93610 0.94776 0.99999 1.21107 0.87468 0.87450 1.06835 1.71035 1.12988 1.13208 1.20357 1.20683 0.93644 0.89839 1.07049 1.16500 0.81178 0.85626 0.77650 1.90770 1.86809 1.12512 1.52787 1.48335 1.05487 1.08728 1.69391 1.22541 0.98392 0.79334 1.01326 1.23141 0.93372 0.99361 1.00867 1.19983 0.91195 0.89178 0.82130 1.86479 1.73463 1.46435 1.31562 1.21201 1.05329 1.02466 1.29822 0.90323 1.24946 0.94111 0.99292 0.93303 1.69934 1.08400 1.35201 1.38794 0.87073 0.76751 0.83568 0.82310 1.20890 1.22850 1.15065 1.22854 0.80255 0.97857 1.01621 1.22569 0.87245 0.93970 1.11947 1.42715 1.06139 1.08717 1.45801 1.21429 0.80583 1.00551 1.04607 0.90596 0.91141 0.90641 0.83925 0.82781 0.89129 0.91725 0.89586 0.90739 0.78694 0.92366 0.92117 0.90585 0.78776 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.00 36.01 0.36 0.02 16 2 C -0.11 -0.69 5.85 -104.94 -0.61 -1.30 16 3 C -0.10 -0.71 9.73 -39.54 -0.38 -1.09 16 4 C -0.07 -0.64 10.11 -39.31 -0.40 -1.04 16 5 C 0.22 2.86 7.80 -156.04 -1.22 1.65 16 6 N -0.45 -7.39 8.37 -9.35 -0.08 -7.47 16 7 C 0.02 0.36 6.78 -83.45 -0.57 -0.21 16 8 C 0.60 12.06 7.85 -12.44 -0.10 11.96 16 9 O -0.55 -11.98 17.20 5.29 0.09 -11.89 16 10 N -0.59 -12.13 3.33 -171.73 -0.57 -12.70 16 11 C 0.11 2.08 6.12 -2.53 -0.02 2.06 16 12 C -0.13 -2.82 4.81 -24.58 -0.12 -2.94 16 13 C 0.22 5.01 0.69 -89.94 -0.06 4.95 16 14 O -0.57 -12.91 10.48 -35.23 -0.37 -13.28 16 15 C -0.55 -14.99 8.79 -34.44 -0.30 -15.29 16 16 H 0.08 2.32 7.82 -52.49 -0.41 1.91 16 17 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 19 Si 0.88 21.53 23.91 -169.99 -4.06 17.47 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.23 -5.48 5.45 56.52 0.31 -5.17 16 23 C 0.10 2.10 6.22 -3.07 -0.02 2.08 16 24 C -0.02 -0.30 11.47 -16.21 -0.19 -0.49 16 25 N -0.36 -4.27 2.93 -62.37 -0.18 -4.45 16 26 C 0.05 0.39 10.54 -16.60 -0.17 0.22 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.17 8.07 -51.93 -0.42 -0.25 16 29 H 0.07 0.18 8.09 -51.93 -0.42 -0.24 16 30 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 31 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.09 1.67 6.13 -51.93 -0.32 1.35 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.90 8.04 -51.93 -0.42 1.48 16 35 H 0.07 1.63 4.94 -51.93 -0.26 1.38 16 36 H 0.37 7.23 9.07 45.56 0.41 7.65 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.06 1.28 8.07 -51.93 -0.42 0.86 16 39 H 0.08 1.74 7.67 -51.93 -0.40 1.34 16 40 H 0.20 2.16 8.06 -52.49 -0.42 1.73 16 41 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -34.79 336.77 -7.63 -42.42 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.41 Total: 7.63 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.89 Total: 2.98 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.06 Total: -50.41 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.28 Total: -25.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.06 Total: 17.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.79 -7.63 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.711 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds