Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40578 * 119.82591 * 2 1 4 4 C 1.35888 * 119.73075 * 179.97438 * 3 2 1 5 5 C 1.41182 * 119.34891 * 359.97438 * 4 3 2 6 6 N 1.32233 * 132.05024 * 180.34234 * 5 4 3 7 7 C 1.34589 * 109.02769 * 180.08955 * 6 5 4 8 8 C 1.47585 * 125.92288 * 179.85899 * 7 6 5 9 9 O 1.21585 * 120.00629 * 179.69278 * 8 7 6 10 10 N 1.34783 * 119.99655 * 359.69702 * 8 7 6 11 11 C 1.47418 * 125.65054 * 0.02562 * 10 8 7 12 12 C 1.54911 * 104.83336 * 155.83119 * 11 10 8 13 13 C 1.55157 * 101.57885 * 37.01031 * 12 11 10 14 14 O 1.42895 * 110.71700 * 82.86763 * 13 12 11 15 15 C 1.50702 * 110.71876 * 205.95912 * 13 12 11 16 16 H 1.08000 * 120.00221 * 117.74066 * 15 13 12 17 17 C 1.37875 * 119.99852 * 297.74202 * 15 13 12 18 18 N 1.31522 * 120.00246 * 185.34425 * 17 15 13 19 19 Si 1.86803 * 120.00285 * 5.33585 * 17 15 13 20 20 H 1.48497 * 109.47024 * 84.75141 * 19 17 15 21 21 H 1.48503 * 109.47388 * 204.74772 * 19 17 15 22 22 H 1.48502 * 109.47015 * 324.75025 * 19 17 15 23 23 C 1.47025 * 125.64656 * 179.97438 * 10 8 7 24 24 C 1.36577 * 108.15916 * 359.60128 * 7 6 5 25 25 N 1.36200 * 107.09573 * 0.23957 * 24 7 6 26 26 C 1.34845 * 119.83185 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46756 * 90.00580 * 1 2 3 28 28 H 1.09003 * 109.46846 * 210.00431 * 1 2 3 29 29 H 1.09001 * 109.47540 * 329.99910 * 1 2 3 30 30 H 1.08007 * 120.13307 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.32647 * 180.02562 * 4 3 2 32 32 H 1.09002 * 110.36695 * 36.99423 * 11 10 8 33 33 H 1.08999 * 110.46552 * 274.71710 * 11 10 8 34 34 H 1.09006 * 110.99980 * 278.93912 * 12 11 10 35 35 H 1.08993 * 111.04000 * 155.10216 * 12 11 10 36 36 H 0.96697 * 114.00213 * 179.97438 * 14 13 12 37 37 H 0.96990 * 120.00336 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.87977 * 61.68264 * 23 10 8 39 39 H 1.09000 * 109.87831 * 300.51764 * 23 10 8 40 40 H 1.07997 * 126.45486 * 180.28084 * 24 7 6 41 41 H 1.08002 * 119.67679 * 0.04634 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2196 0.0000 4 6 3.5651 1.2173 0.0005 5 6 4.2550 -0.0144 0.0016 6 7 5.5445 -0.3073 0.0082 7 6 5.6906 -1.6453 0.0040 8 6 6.9727 -2.3763 0.0059 9 8 6.9793 -3.5921 0.0073 10 7 8.1362 -1.6960 0.0062 11 6 8.2734 -0.2282 0.0053 12 6 9.6702 0.0399 0.6191 13 6 10.4975 -1.1361 0.0362 14 8 10.9510 -0.8297 -1.2838 15 6 11.6616 -1.4659 0.9346 16 1 11.7271 -2.4390 1.3985 17 6 12.6431 -0.5252 1.1645 18 7 13.7110 -0.8459 1.8620 19 14 12.4563 1.2049 0.4851 20 1 11.6461 2.0208 1.4247 21 1 13.7978 1.8212 0.3245 22 1 11.7766 1.1479 -0.8340 23 6 9.4789 -2.2950 0.0086 24 6 4.4467 -2.2093 0.0035 25 7 3.5445 -1.1890 0.0020 26 6 2.1778 -1.1698 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6655 2.1546 -0.0004 31 1 4.1119 2.1486 0.0009 32 1 7.4956 0.2258 0.6193 33 1 8.2259 0.1583 -1.0128 34 1 9.6345 -0.0091 1.7075 35 1 10.0663 0.9992 0.2861 36 1 11.4738 -1.5327 -1.6932 37 1 14.4013 -0.1841 2.0241 38 1 9.6203 -2.8914 -0.8928 39 1 9.6044 -2.9201 0.8927 40 1 4.2210 -3.2654 0.0048 41 1 1.6298 -2.1004 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862099958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = 0.447430 kcal Electronic energy + Delta-G solvation = -25872.293610 eV Core-core repulsion = 22139.164427 eV Total energy + Delta-G solvation = -3733.129183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.93854 -41.09965 -39.27667 -38.49517 -36.24790 -34.79470 -34.51427 -33.15391 -31.92961 -30.22308 -29.95692 -28.20221 -27.00997 -25.03341 -24.19379 -23.26024 -23.07678 -21.53289 -20.50740 -19.51372 -18.98757 -18.00983 -17.58738 -17.27861 -17.04604 -16.60614 -16.52592 -16.34503 -15.80260 -15.50503 -15.05190 -14.97236 -14.85720 -14.74571 -14.25127 -14.09862 -13.94954 -13.34352 -13.22627 -13.18605 -13.14134 -12.85903 -12.49414 -12.45026 -12.37404 -12.16286 -11.92551 -11.83243 -11.56169 -11.05569 -10.96295 -10.77328 -10.37383 -9.92701 -9.61567 -8.93647 -8.37661 -6.52951 -0.36966 0.16539 0.92879 1.38371 1.39086 1.45332 1.67633 1.96486 2.21862 2.39385 2.51458 2.94011 2.98099 3.29417 3.53647 3.66257 3.76019 3.88267 3.96816 4.01933 4.11326 4.22617 4.28013 4.39470 4.45232 4.66518 4.71654 4.76761 4.80271 4.90933 4.92011 5.05288 5.08388 5.09470 5.24971 5.31946 5.33158 5.43568 5.49150 5.56730 5.93767 6.05059 6.41244 6.55308 6.57238 6.99796 7.11447 7.27907 8.76399 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.003201 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.078164 B = 8743.910455 C = 9493.562043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.097 4.097 3 C -0.076 4.076 4 C -0.097 4.097 5 C 0.210 3.790 6 N -0.493 5.493 7 C -0.019 4.019 8 C 0.602 3.398 9 O -0.578 6.578 10 N -0.597 5.597 11 C 0.124 3.876 12 C -0.130 4.130 13 C 0.219 3.781 14 O -0.572 6.572 15 C -0.552 4.552 16 H 0.039 0.961 17 C 0.039 3.961 18 N -0.933 5.933 19 Si 0.936 3.064 20 H -0.269 1.269 21 H -0.305 1.305 22 H -0.215 1.215 23 C 0.103 3.897 24 C -0.013 4.013 25 N -0.362 5.362 26 C 0.030 3.970 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.181 0.819 31 H 0.166 0.834 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.378 0.622 37 H 0.269 0.731 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.213 0.787 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.504 6.464 -5.385 32.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.099 4.099 3 C -0.100 4.100 4 C -0.117 4.117 5 C -0.036 4.036 6 N -0.215 5.215 7 C -0.150 4.150 8 C 0.392 3.608 9 O -0.459 6.459 10 N -0.328 5.328 11 C 0.002 3.998 12 C -0.168 4.168 13 C 0.178 3.822 14 O -0.380 6.380 15 C -0.590 4.590 16 H 0.057 0.943 17 C -0.162 4.162 18 N -0.572 5.572 19 Si 0.761 3.239 20 H -0.195 1.195 21 H -0.232 1.232 22 H -0.138 1.138 23 C -0.020 4.020 24 C -0.150 4.150 25 N -0.032 5.032 26 C -0.089 4.089 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.198 0.802 31 H 0.183 0.817 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.230 0.770 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -31.053 6.863 -5.200 32.225 hybrid contribution 0.859 -0.935 0.074 1.272 sum -30.195 5.928 -5.126 31.195 Atomic orbital electron populations 1.20806 0.86074 1.04958 1.04121 1.20037 0.99120 0.90949 0.99798 1.21519 0.92422 0.99947 0.96108 1.20643 0.94824 0.93869 1.02386 1.21607 0.86996 0.89036 1.05981 1.70838 1.15174 1.12761 1.22687 1.20255 0.93012 0.90726 1.11054 1.16977 0.81960 0.85536 0.76365 1.90727 1.87422 1.13770 1.54019 1.48368 1.05130 1.09112 1.70140 1.22420 0.97134 0.78743 1.01532 1.23101 0.94503 0.98720 1.00499 1.19783 0.90133 0.90536 0.81710 1.86426 1.73745 1.47106 1.30714 1.21378 1.06804 1.00836 1.29952 0.94257 1.25740 0.93614 1.03220 0.93581 1.70055 1.09577 1.36674 1.40848 0.86120 0.76634 0.78777 0.82331 1.19491 1.23249 1.13786 1.22576 0.81319 0.97244 1.00868 1.22703 0.86637 0.94976 1.10647 1.42827 1.07382 1.07685 1.45320 1.22158 0.79000 1.02825 1.04944 0.89339 0.89967 0.89097 0.80168 0.81673 0.87888 0.91286 0.90372 0.90211 0.77347 0.92175 0.91698 0.92696 0.77023 0.78983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.12 10.00 71.24 0.71 0.60 16 2 C -0.10 -0.81 5.85 -20.07 -0.12 -0.92 16 3 C -0.08 -0.70 9.73 22.30 0.22 -0.49 16 4 C -0.10 -1.60 10.11 22.45 0.23 -1.37 16 5 C 0.21 5.28 7.80 134.20 1.05 6.32 16 6 N -0.49 -15.94 8.37 -183.49 -1.54 -17.48 16 7 C -0.02 -0.64 6.78 40.80 0.28 -0.36 16 8 C 0.60 24.76 7.85 86.71 0.68 25.44 16 9 O -0.58 -26.07 17.20 -3.98 -0.07 -26.14 16 10 N -0.60 -25.13 3.33 -815.49 -2.71 -27.85 16 11 C 0.12 4.80 6.12 86.86 0.53 5.33 16 12 C -0.13 -5.64 4.81 31.99 0.15 -5.48 16 13 C 0.22 10.32 0.69 -10.35 -0.01 10.31 16 14 O -0.57 -25.39 10.48 -148.98 -1.56 -26.95 16 15 C -0.55 -31.12 8.79 25.60 0.22 -30.90 16 16 H 0.04 2.47 7.82 -2.91 -0.02 2.44 16 17 C 0.04 2.25 5.47 84.65 0.46 2.71 16 18 N -0.93 -57.59 13.96 21.45 0.30 -57.29 16 19 Si 0.94 44.54 23.91 68.60 1.64 46.18 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 22 H -0.22 -9.77 5.45 99.48 0.54 -9.23 16 23 C 0.10 4.65 6.22 86.73 0.54 5.19 16 24 C -0.01 -0.34 11.47 83.63 0.96 0.62 16 25 N -0.36 -7.86 2.93 -351.25 -1.03 -8.89 16 26 C 0.03 0.38 10.54 83.16 0.88 1.25 16 27 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.08 -0.03 8.07 -2.39 -0.02 -0.05 16 29 H 0.09 -0.10 8.09 -2.39 -0.02 -0.12 16 30 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 31 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.10 3.78 6.13 -2.39 -0.01 3.77 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.08 3.47 8.04 -2.38 -0.02 3.45 16 35 H 0.08 3.36 4.94 -2.39 -0.01 3.35 16 36 H 0.38 14.78 9.07 -74.06 -0.67 14.11 16 37 H 0.27 15.59 8.31 -92.72 -0.77 14.82 16 38 H 0.06 2.83 8.07 -2.39 -0.02 2.81 16 39 H 0.05 2.68 7.67 -2.39 -0.02 2.66 16 40 H 0.21 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -78.91 336.77 2.05 -76.86 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.24 Total: 23.29 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.78 Total: 18.26 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.98 Total: -111.50 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -1.63 Total: -53.09 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.64 Total: 46.18 kcal Total: -78.91 2.05 -76.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.306 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds