Wall clock time and date at job start Tue Mar 31 2020 10:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86808 * 119.99710 * 2 1 4 4 H 1.48504 * 109.47020 * 239.99689 * 3 2 1 5 5 H 1.48497 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47056 * 119.99952 * 3 2 1 7 7 C 1.38648 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99884 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99934 * 185.06018 * 9 7 2 11 11 C 1.38879 * 120.07049 * 354.46432 * 10 9 7 12 12 C 1.38103 * 119.93009 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06661 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.92490 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47264 * 90.00081 * 14 13 12 16 16 C 1.34778 * 119.99792 * 179.97438 * 15 14 13 17 17 O 1.21268 * 120.00510 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99729 * 180.02562 * 16 15 14 19 19 C 1.52994 * 109.47278 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47278 * 180.02562 * 19 18 16 21 21 C 1.39868 * 126.03752 * 269.99479 * 20 19 18 22 22 N 1.30844 * 108.19938 * 179.73961 * 21 20 19 23 23 N 1.40080 * 108.20436 * 0.40533 * 22 21 20 24 24 H 0.97004 * 126.03933 * 179.84797 * 23 22 21 25 25 C 1.34951 * 107.92986 * 359.59228 * 23 22 21 26 26 C 1.38296 * 120.14035 * 0.24706 * 13 12 11 27 27 C 1.38101 * 120.06984 * 359.45805 * 26 13 12 28 28 H 0.97002 * 120.00280 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.03530 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.96368 * 180.02562 * 12 11 10 31 31 H 1.08996 * 109.47324 * 329.99815 * 14 13 12 32 32 H 1.09004 * 109.46921 * 210.00101 * 14 13 12 33 33 H 0.97003 * 119.99935 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.47240 * 59.99725 * 18 16 15 35 35 H 1.09004 * 109.47069 * 300.00396 * 18 16 15 36 36 H 1.08996 * 109.47325 * 59.99526 * 19 18 16 37 37 H 1.09004 * 109.46843 * 299.99860 * 19 18 16 38 38 H 1.07998 * 125.90187 * 0.02562 * 21 20 19 39 39 H 1.07998 * 126.12724 * 180.22340 * 25 23 22 40 40 H 1.07997 * 119.96306 * 179.69955 * 26 13 12 41 41 H 1.07992 * 120.03639 * 180.26694 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0016 10 6 2.0701 -3.5044 0.1087 11 6 3.4573 -3.4393 0.0953 12 6 4.2026 -4.5968 0.2039 13 6 3.5689 -5.8201 0.3256 14 6 4.3853 -7.0813 0.4434 15 7 4.6570 -7.3570 1.8563 16 6 5.3757 -8.4426 2.2050 17 8 5.7978 -9.1909 1.3491 18 6 5.6546 -8.7265 3.6585 19 6 6.4835 -10.0069 3.7781 20 6 6.7620 -10.2911 5.2316 21 6 7.8646 -9.8369 5.9624 22 7 7.7550 -10.2832 7.1875 23 7 6.5821 -11.0443 7.2726 24 1 6.2521 -11.4976 8.0642 25 6 5.9893 -11.0310 6.0603 26 6 2.1877 -5.8888 0.3336 27 6 1.4368 -4.7343 0.2315 28 1 -0.4851 0.8400 -0.0004 29 1 3.9528 -2.4843 -0.0001 30 1 5.2814 -4.5467 0.1939 31 1 5.3275 -6.9554 -0.0899 32 1 3.8314 -7.9144 0.0106 33 1 4.3190 -6.7587 2.5409 34 1 4.7122 -8.8522 4.1915 35 1 6.2086 -7.8936 4.0916 36 1 7.4259 -9.8807 3.2451 37 1 5.9299 -10.8399 3.3449 38 1 8.6656 -9.2201 5.5824 39 1 5.0642 -11.5229 5.7985 40 1 1.6958 -6.8460 0.4239 41 1 0.3583 -4.7882 0.2422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863865146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:15 Heat of formation + Delta-G solvation = 23.276363 kcal Electronic energy + Delta-G solvation = -23799.445762 eV Core-core repulsion = 20067.306516 eV Total energy + Delta-G solvation = -3732.139246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50223 -39.73198 -39.02450 -36.89890 -34.49271 -34.11334 -32.38506 -31.64337 -30.39381 -30.23582 -29.09150 -26.07002 -25.10859 -23.73451 -22.29969 -22.07110 -20.65161 -20.47854 -20.08170 -18.13249 -18.08470 -17.27850 -16.80676 -15.85757 -15.75290 -14.93499 -14.87149 -14.71895 -14.63548 -14.32671 -13.93988 -13.74923 -13.69797 -13.37850 -13.07272 -12.83894 -12.79565 -12.52480 -12.28233 -12.04475 -11.69114 -11.40429 -11.34481 -10.96921 -10.83350 -10.81021 -10.71549 -10.51520 -9.99704 -9.86451 -9.44579 -8.94600 -8.92428 -8.80507 -8.30284 -7.33950 -6.54049 -4.13155 1.55251 2.05799 2.11308 2.43364 2.56977 2.69928 3.08142 3.08467 3.12110 3.45868 3.89456 4.42699 4.50478 4.56254 4.74736 4.91152 5.00504 5.02084 5.14920 5.19667 5.25935 5.32029 5.41973 5.48736 5.53812 5.65004 5.79234 5.93397 5.95604 6.01706 6.10645 6.31261 6.33329 6.53275 6.58923 6.78872 6.90514 6.94030 7.12458 7.25820 7.30429 7.33642 7.61840 7.70623 7.90404 8.29118 8.91124 9.59073 10.63310 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.001970 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.356863 B =14208.814526 C =14849.306534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.214 4.214 14 C 0.178 3.822 15 N -0.724 5.724 16 C 0.507 3.493 17 O -0.550 6.550 18 C -0.136 4.136 19 C -0.024 4.024 20 C -0.235 4.235 21 C 0.056 3.944 22 N -0.298 5.298 23 N -0.480 5.480 24 H 0.439 0.561 25 C 0.060 3.940 26 C -0.055 4.055 27 C -0.195 4.195 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.112 0.888 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.161 -17.742 10.435 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.105 3.895 11 C -0.256 4.256 12 C -0.070 4.070 13 C -0.216 4.216 14 C 0.056 3.944 15 N -0.375 5.375 16 C 0.294 3.706 17 O -0.428 6.428 18 C -0.176 4.176 19 C -0.063 4.063 20 C -0.246 4.246 21 C -0.131 4.131 22 N -0.121 5.121 23 N -0.188 5.188 24 H 0.282 0.718 25 C -0.088 4.088 26 C -0.074 4.074 27 C -0.215 4.215 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.200 0.800 39 H 0.193 0.807 40 H 0.130 0.870 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.545 -18.064 10.925 23.598 hybrid contribution -0.342 1.043 -0.081 1.100 sum 10.204 -17.021 10.844 22.614 Atomic orbital electron populations 1.70025 1.06002 1.27989 1.45342 1.25319 0.95867 0.98939 0.96337 0.85765 0.78725 0.79604 0.79269 1.19416 1.20213 1.19422 1.21306 0.91840 0.80725 1.53119 0.88966 1.83979 1.34493 1.11564 1.77538 1.19440 0.90327 0.88059 0.91653 1.21162 0.93775 0.98969 1.11717 1.20647 0.98386 0.91639 0.96322 1.19220 0.93565 0.93660 1.15143 1.19967 0.98399 0.94773 0.81253 1.46401 1.54767 1.26898 1.09450 1.20767 0.77796 0.80672 0.91376 1.90684 1.51834 1.47907 1.52407 1.21701 1.02311 1.00269 0.93315 1.19582 1.00669 0.96334 0.89745 1.20193 0.98238 1.08041 0.98131 1.23896 0.98978 0.99580 0.90619 1.77343 1.02083 1.12145 1.20479 1.46317 1.19141 1.42347 1.10967 0.71783 1.22459 0.99471 1.00918 0.85936 1.20527 0.92781 0.96799 0.97267 1.20217 0.99667 0.90265 1.11334 0.91819 0.85425 0.87388 0.91653 0.91640 0.76384 0.89135 0.88927 0.90333 0.90652 0.79960 0.80656 0.86986 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.51 13.67 55.48 0.76 -23.76 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.62 9.49 30.88 0.29 -10.33 16 8 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 9 O -0.17 -4.76 9.76 0.04 0.00 -4.76 16 10 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.24 -4.84 9.17 -39.39 -0.36 -5.20 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.34 5.25 -104.58 -0.55 -3.89 16 14 C 0.18 2.40 5.80 -5.19 -0.03 2.37 16 15 N -0.72 -8.39 5.55 -61.47 -0.34 -8.73 16 16 C 0.51 5.92 7.83 -10.98 -0.09 5.84 16 17 O -0.55 -8.42 15.98 5.57 0.09 -8.33 16 18 C -0.14 -1.10 5.68 -27.89 -0.16 -1.25 16 19 C -0.02 -0.20 4.99 -27.89 -0.14 -0.34 16 20 C -0.23 -1.84 5.35 -105.05 -0.56 -2.40 16 21 C 0.06 0.48 11.96 -17.36 -0.21 0.27 16 22 N -0.30 -2.88 12.70 30.63 0.39 -2.49 16 23 N -0.48 -3.27 7.36 30.45 0.22 -3.05 16 24 H 0.44 1.63 8.96 -182.61 -1.64 -0.01 16 25 C 0.06 0.38 11.90 -17.22 -0.20 0.18 16 26 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 27 C -0.20 -3.87 9.99 -39.39 -0.39 -4.27 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.40 4.11 8.46 -40.82 -0.35 3.77 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -33.42 360.34 -8.32 -41.74 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.33 Total: 6.27 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -3.52 Total: -17.17 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 1.03 Total: -38.03 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.42 -8.32 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863865146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.017 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds