Wall clock time and date at job start Tue Mar 31 2020 10:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86808 * 119.99710 * 2 1 4 4 H 1.48504 * 109.47020 * 239.99689 * 3 2 1 5 5 H 1.48497 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47056 * 119.99952 * 3 2 1 7 7 C 1.38648 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99884 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99934 * 185.06018 * 9 7 2 11 11 C 1.38879 * 120.07049 * 354.46432 * 10 9 7 12 12 C 1.38103 * 119.93009 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06661 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.92490 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47264 * 90.00081 * 14 13 12 16 16 C 1.34778 * 119.99792 * 179.97438 * 15 14 13 17 17 O 1.21268 * 120.00510 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99729 * 180.02562 * 16 15 14 19 19 C 1.52994 * 109.47278 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47278 * 180.02562 * 19 18 16 21 21 C 1.39868 * 126.03752 * 269.99479 * 20 19 18 22 22 N 1.30844 * 108.19938 * 179.73961 * 21 20 19 23 23 N 1.40080 * 108.20436 * 0.40533 * 22 21 20 24 24 H 0.97004 * 126.03933 * 179.84797 * 23 22 21 25 25 C 1.34951 * 107.92986 * 359.59228 * 23 22 21 26 26 C 1.38296 * 120.14035 * 0.24706 * 13 12 11 27 27 C 1.38101 * 120.06984 * 359.45805 * 26 13 12 28 28 H 0.97002 * 120.00280 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.03530 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.96368 * 180.02562 * 12 11 10 31 31 H 1.08996 * 109.47324 * 329.99815 * 14 13 12 32 32 H 1.09004 * 109.46921 * 210.00101 * 14 13 12 33 33 H 0.97003 * 119.99935 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.47240 * 59.99725 * 18 16 15 35 35 H 1.09004 * 109.47069 * 300.00396 * 18 16 15 36 36 H 1.08996 * 109.47325 * 59.99526 * 19 18 16 37 37 H 1.09004 * 109.46843 * 299.99860 * 19 18 16 38 38 H 1.07998 * 125.90187 * 0.02562 * 21 20 19 39 39 H 1.07998 * 126.12724 * 180.22340 * 25 23 22 40 40 H 1.07997 * 119.96306 * 179.69955 * 26 13 12 41 41 H 1.07992 * 120.03639 * 180.26694 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3684 0.0016 10 6 2.0701 -3.5044 0.1087 11 6 3.4573 -3.4393 0.0953 12 6 4.2026 -4.5968 0.2039 13 6 3.5689 -5.8201 0.3256 14 6 4.3853 -7.0813 0.4434 15 7 4.6570 -7.3570 1.8563 16 6 5.3757 -8.4426 2.2050 17 8 5.7978 -9.1909 1.3491 18 6 5.6546 -8.7265 3.6585 19 6 6.4835 -10.0069 3.7781 20 6 6.7620 -10.2911 5.2316 21 6 7.8646 -9.8369 5.9624 22 7 7.7550 -10.2832 7.1875 23 7 6.5821 -11.0443 7.2726 24 1 6.2521 -11.4976 8.0642 25 6 5.9893 -11.0310 6.0603 26 6 2.1877 -5.8888 0.3336 27 6 1.4368 -4.7343 0.2315 28 1 -0.4851 0.8400 -0.0004 29 1 3.9528 -2.4843 -0.0001 30 1 5.2814 -4.5467 0.1939 31 1 5.3275 -6.9554 -0.0899 32 1 3.8314 -7.9144 0.0106 33 1 4.3190 -6.7587 2.5409 34 1 4.7122 -8.8522 4.1915 35 1 6.2086 -7.8936 4.0916 36 1 7.4259 -9.8807 3.2451 37 1 5.9299 -10.8399 3.3449 38 1 8.6656 -9.2201 5.5824 39 1 5.0642 -11.5229 5.7985 40 1 1.6958 -6.8460 0.4239 41 1 0.3583 -4.7882 0.2422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863865146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:14 Heat of formation + Delta-G solvation = 0.264661 kcal Electronic energy + Delta-G solvation = -23800.443625 eV Core-core repulsion = 20067.306516 eV Total energy + Delta-G solvation = -3733.137108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05141 -40.96684 -40.41558 -38.48302 -35.61911 -34.83783 -34.26075 -32.22042 -31.83582 -31.53330 -29.92097 -27.67704 -26.48162 -24.62625 -23.63232 -22.87357 -22.12203 -21.30853 -20.73635 -19.85879 -18.89316 -18.67963 -17.88132 -16.91398 -16.72319 -16.34005 -16.22615 -15.78455 -15.53443 -15.43648 -15.34692 -15.12033 -14.71890 -14.53809 -14.35004 -14.11001 -13.69712 -13.56971 -13.40375 -13.11134 -12.99316 -12.90188 -12.51132 -12.36906 -12.20485 -12.13780 -11.96959 -11.43082 -11.19386 -10.91491 -10.73948 -10.56316 -9.97194 -9.79367 -9.37861 -8.98498 -8.47447 -6.15734 0.56949 0.59051 1.03373 1.36350 1.46060 1.52098 1.79256 1.84143 2.13134 2.17817 2.44613 2.88611 3.19564 3.49977 3.83144 3.92183 4.04666 4.06411 4.12581 4.19025 4.33901 4.41413 4.48625 4.58457 4.66862 4.77174 4.79613 4.83214 4.91369 4.97821 5.06353 5.15260 5.28235 5.33840 5.41727 5.52569 5.56415 5.70475 5.75705 5.77102 6.02179 6.17845 6.50009 6.70044 6.76637 6.97277 7.38013 7.76698 8.75043 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019667 B = 0.001970 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.356863 B =14208.814526 C =14849.306534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.230 6.230 10 C 0.121 3.879 11 C -0.244 4.244 12 C -0.047 4.047 13 C -0.181 4.181 14 C 0.183 3.817 15 N -0.719 5.719 16 C 0.510 3.490 17 O -0.587 6.587 18 C -0.126 4.126 19 C -0.016 4.016 20 C -0.251 4.251 21 C 0.046 3.954 22 N -0.337 5.337 23 N -0.475 5.475 24 H 0.450 0.550 25 C 0.072 3.928 26 C -0.044 4.044 27 C -0.205 4.205 28 H 0.273 0.727 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.194 0.806 39 H 0.209 0.791 40 H 0.148 0.852 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -19.671 11.403 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.070 3.930 11 C -0.263 4.263 12 C -0.066 4.066 13 C -0.182 4.182 14 C 0.060 3.940 15 N -0.371 5.371 16 C 0.298 3.702 17 O -0.468 6.468 18 C -0.166 4.166 19 C -0.055 4.055 20 C -0.262 4.262 21 C -0.140 4.140 22 N -0.160 5.160 23 N -0.184 5.184 24 H 0.296 0.704 25 C -0.077 4.077 26 C -0.063 4.063 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.211 0.789 39 H 0.226 0.774 40 H 0.166 0.834 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.265 -20.045 11.928 26.354 hybrid contribution -0.739 1.207 -0.348 1.457 sum 11.526 -18.838 11.581 24.937 Atomic orbital electron populations 1.70172 1.07998 1.28901 1.48581 1.26579 0.96837 1.02757 0.95833 0.84664 0.77403 0.74335 0.79950 1.18225 1.19785 1.18078 1.21784 0.92555 0.81347 1.53269 0.87927 1.83948 1.36052 1.12674 1.80906 1.20004 0.91645 0.87974 0.93377 1.21252 0.93021 1.00101 1.11975 1.20951 0.99810 0.90768 0.95024 1.19529 0.93485 0.94230 1.10938 1.19855 0.98105 0.93367 0.82662 1.46253 1.54857 1.27267 1.08729 1.21321 0.76652 0.79734 0.92493 1.90680 1.53216 1.49084 1.53770 1.21698 1.03480 1.00650 0.90744 1.19444 0.99976 0.96226 0.89837 1.20207 0.98688 1.09277 0.98061 1.24203 0.99612 0.99607 0.90537 1.77291 1.03762 1.13683 1.21294 1.46379 1.18453 1.41789 1.11803 0.70367 1.22974 0.99898 0.99591 0.85214 1.20886 0.93086 0.96962 0.95318 1.20460 1.00087 0.90431 1.11442 0.91820 0.86240 0.84335 0.91406 0.91024 0.75297 0.87059 0.87597 0.91609 0.91065 0.78880 0.77442 0.83408 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.26 13.67 21.61 0.30 -54.96 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 3 Si 1.02 41.72 29.55 68.60 2.03 43.75 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.41 -23.35 9.49 67.92 0.64 -22.70 16 8 H 0.10 5.27 5.20 -2.91 -0.02 5.26 16 9 O -0.23 -13.36 9.76 -22.77 -0.22 -13.59 16 10 C 0.12 5.70 6.65 22.58 0.15 5.85 16 11 C -0.24 -9.92 9.17 22.39 0.21 -9.72 16 12 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 13 C -0.18 -5.00 5.25 -19.83 -0.10 -5.11 16 14 C 0.18 4.19 5.80 85.63 0.50 4.69 16 15 N -0.72 -13.84 5.55 -466.80 -2.59 -16.43 16 16 C 0.51 10.21 7.83 87.66 0.69 10.90 16 17 O -0.59 -16.46 15.98 -2.99 -0.05 -16.51 16 18 C -0.13 -1.60 5.68 29.85 0.17 -1.43 16 19 C -0.02 -0.22 4.99 29.85 0.15 -0.07 16 20 C -0.25 -3.34 5.35 -20.14 -0.11 -3.45 16 21 C 0.05 0.72 11.96 85.23 1.02 1.74 16 22 N -0.34 -6.08 12.70 -57.02 -0.72 -6.80 16 23 N -0.48 -5.47 7.36 -57.59 -0.42 -5.89 16 24 H 0.45 2.42 8.96 -213.33 -1.91 0.50 16 25 C 0.07 0.70 11.90 83.54 0.99 1.69 16 26 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 27 C -0.20 -8.09 9.99 22.39 0.22 -7.86 16 28 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 29 H 0.12 4.98 5.64 -2.91 -0.02 4.97 16 30 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 32 H 0.07 1.64 8.08 -2.38 -0.02 1.62 16 33 H 0.41 6.67 8.46 -92.71 -0.78 5.89 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.07 1.05 8.10 -2.38 -0.02 1.03 16 38 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -77.24 360.34 2.13 -75.12 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -1.61 Total: 23.91 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 5.42 Total: -28.60 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -3.44 Total: -84.08 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.27 Total: -30.10 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -77.24 2.13 -75.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863865146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.382 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds