Wall clock time and date at job start Tue Mar 31 2020 11:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38276 * 119.92510 * 2 1 4 4 C 1.38110 * 120.07507 * 179.70434 * 3 2 1 5 5 C 1.38899 * 119.92202 * 0.27203 * 4 3 2 6 6 N 1.39841 * 120.07079 * 180.02562 * 5 4 3 7 7 C 1.46496 * 119.99831 * 173.91802 * 6 5 4 8 8 C 1.50701 * 109.47051 * 96.31478 * 7 6 5 9 9 H 1.08003 * 120.00129 * 5.23897 * 8 7 6 10 10 C 1.37880 * 119.99952 * 185.22947 * 8 7 6 11 11 N 1.31513 * 119.99869 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00032 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47272 * 90.00206 * 12 10 8 14 14 H 1.48495 * 109.47182 * 210.00162 * 12 10 8 15 15 H 1.48500 * 109.46946 * 330.00653 * 12 10 8 16 16 C 1.34773 * 119.99885 * 353.91877 * 6 5 4 17 17 O 1.21742 * 120.00037 * 3.27342 * 16 6 5 18 18 C 1.46344 * 119.99920 * 183.27839 * 16 6 5 19 19 C 1.36738 * 126.82904 * 8.23414 * 18 16 6 20 20 N 1.33220 * 107.96480 * 179.97438 * 19 18 16 21 21 C 1.31535 * 109.76226 * 0.02562 * 20 19 18 22 22 O 1.35207 * 125.49117 * 179.97438 * 21 20 19 23 23 N 1.34959 * 109.01680 * 359.74709 * 21 20 19 24 24 C 1.46499 * 126.54439 * 180.25165 * 23 21 20 25 25 C 1.38887 * 119.85524 * 0.02562 * 5 4 3 26 26 C 1.38112 * 119.93090 * 0.02562 * 25 5 4 27 27 H 1.08998 * 109.47123 * 90.00322 * 1 2 3 28 28 H 1.09007 * 109.46856 * 209.99791 * 1 2 3 29 29 H 1.08991 * 109.47503 * 329.99926 * 1 2 3 30 30 H 1.08001 * 119.96836 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.03833 * 180.29911 * 4 3 2 32 32 H 1.09000 * 109.47115 * 216.31215 * 7 6 5 33 33 H 1.09004 * 109.47446 * 336.31483 * 7 6 5 34 34 H 0.97002 * 119.99633 * 179.97438 * 11 10 8 35 35 H 1.08006 * 126.01858 * 359.96759 * 19 18 16 36 36 H 0.96701 * 113.99968 * 90.02358 * 22 21 20 37 37 H 1.08999 * 109.46850 * 267.32096 * 24 23 21 38 38 H 1.08999 * 109.47382 * 27.32345 * 24 23 21 39 39 H 1.08994 * 109.47246 * 147.32212 * 24 23 21 40 40 H 1.08004 * 120.03620 * 179.97438 * 25 5 4 41 41 H 1.07997 * 119.96601 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5779 1.2020 0.0062 5 6 4.2739 0.0000 0.0067 6 7 5.6723 0.0000 0.0134 7 6 6.4042 -1.2618 0.1484 8 6 6.7973 -1.7630 -1.2174 9 1 6.6040 -1.1580 -2.0909 10 6 7.4039 -2.9939 -1.3517 11 7 7.6389 -3.7308 -0.2881 12 14 7.8918 -3.6149 -3.0445 13 1 9.2767 -3.1762 -3.3526 14 1 7.8264 -5.0983 -3.0655 15 1 6.9603 -3.0639 -4.0614 16 6 6.3467 1.1610 -0.1042 17 8 5.7397 2.2150 -0.1563 18 6 7.8087 1.1545 -0.1693 19 6 8.6194 0.0590 -0.2806 20 7 9.8819 0.4833 -0.3078 21 6 9.9123 1.7952 -0.2186 22 8 11.0299 2.5562 -0.2156 23 7 8.6479 2.2598 -0.1356 24 6 8.2392 3.6624 -0.0276 25 6 3.5780 -1.2019 0.0004 26 6 2.1969 -1.1985 -0.0068 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6551 2.1327 -0.0004 31 1 4.1161 2.1384 0.0110 32 1 7.3001 -1.0999 0.7477 33 1 5.7685 -2.0001 0.6372 34 1 8.0653 -4.5969 -0.3827 35 1 8.2935 -0.9692 -0.3365 36 1 11.3159 2.8386 -1.0951 37 1 8.1346 3.9305 1.0237 38 1 8.9941 4.2976 -0.4912 39 1 7.2849 3.8029 -0.5351 40 1 4.1163 -2.1383 0.0003 41 1 1.6552 -2.1327 -0.0113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865040559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:07 Heat of formation + Delta-G solvation = 55.836054 kcal Electronic energy + Delta-G solvation = -26583.503230 eV Core-core repulsion = 22852.775878 eV Total energy + Delta-G solvation = -3730.727352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86242 -40.04664 -38.00523 -37.07626 -35.82108 -33.61195 -33.11569 -31.65004 -30.38895 -28.96749 -27.89552 -26.64851 -25.86867 -23.66462 -22.69253 -22.04050 -21.04670 -20.59430 -19.14697 -18.26821 -16.92250 -16.73426 -16.62119 -16.17095 -15.36387 -15.15877 -14.71562 -14.50852 -14.36646 -14.01850 -13.72080 -13.42090 -13.31520 -13.07652 -12.96807 -12.57352 -12.51414 -12.38444 -11.97461 -11.93264 -11.82096 -11.42506 -11.10991 -11.01284 -10.62739 -10.37977 -10.31702 -10.14810 -9.60988 -9.35779 -9.17194 -8.85556 -8.70449 -8.38582 -8.00215 -7.16522 -6.37865 -4.47801 1.43674 1.97203 2.01763 2.52086 3.14306 3.19941 3.27135 3.29856 3.62970 3.81319 4.13431 4.21439 4.42301 4.90540 4.94756 4.98889 5.27995 5.31003 5.33440 5.54150 5.59470 5.62389 5.67798 5.78747 5.93941 6.07310 6.10321 6.16735 6.23030 6.35518 6.46759 6.69197 6.75326 6.86973 6.94242 7.00001 7.12922 7.22606 7.34512 7.56327 7.72866 7.76505 7.80296 7.97840 8.31475 8.55675 8.68552 9.18600 10.65909 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010096 B = 0.005962 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.672613 B = 4695.362680 C = 7051.486547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.176 4.176 5 C 0.167 3.833 6 N -0.519 5.519 7 C 0.205 3.795 8 C -0.549 4.549 9 H 0.069 0.931 10 C 0.073 3.927 11 N -0.877 5.877 12 Si 0.899 3.101 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.271 1.271 16 C 0.601 3.399 17 O -0.555 6.555 18 C -0.097 4.097 19 C 0.068 3.932 20 N -0.495 5.495 21 C 0.379 3.621 22 O -0.444 6.444 23 N -0.438 5.438 24 C 0.073 3.927 25 C -0.140 4.140 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.180 0.820 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.273 0.727 35 H 0.254 0.746 36 H 0.397 0.603 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 9.275 0.191 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.126 4.126 4 C -0.195 4.195 5 C 0.071 3.929 6 N -0.236 5.236 7 C 0.087 3.913 8 C -0.587 4.587 9 H 0.087 0.913 10 C -0.133 4.133 11 N -0.512 5.512 12 Si 0.726 3.274 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.196 1.196 16 C 0.393 3.607 17 O -0.439 6.439 18 C -0.210 4.210 19 C -0.084 4.084 20 N -0.224 5.224 21 C 0.081 3.919 22 O -0.245 6.245 23 N -0.133 5.133 24 C -0.070 4.070 25 C -0.160 4.160 26 C -0.121 4.121 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.196 0.804 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.269 0.731 36 H 0.254 0.746 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.157 0.843 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.553 9.284 0.804 9.973 hybrid contribution -0.157 0.258 -1.385 1.417 sum -3.710 9.542 -0.580 10.255 Atomic orbital electron populations 1.20668 0.92068 1.01891 1.01502 1.19798 0.95458 0.93537 1.04259 1.20892 0.93965 0.96795 1.00957 1.22767 0.94334 1.00284 1.02092 1.17986 0.82020 0.94412 0.98462 1.45495 1.04175 1.09167 1.64758 1.20372 0.93208 0.79221 0.98525 1.21323 1.41161 1.03460 0.92748 0.91327 1.24948 0.94896 0.95774 0.97669 1.69908 1.40313 1.12200 1.28809 0.86432 0.79497 0.78058 0.83433 1.19804 1.20763 1.19598 1.16629 0.84811 0.83170 0.76072 1.90323 1.68215 1.31821 1.53500 1.20331 0.91732 0.87176 1.21711 1.25772 0.85457 1.02878 0.94338 1.70567 1.24177 1.05602 1.22064 1.20511 0.78973 0.87283 1.05124 1.84787 1.37050 1.68388 1.34232 1.45482 1.06091 1.07558 1.54208 1.22104 1.03054 0.78122 1.03702 1.21103 0.94063 0.97643 1.03169 1.20730 0.93403 0.97115 1.00894 0.92024 0.92174 0.92285 0.86812 0.80383 0.92518 0.92416 0.91760 0.73112 0.74642 0.90750 0.90244 0.87890 0.84250 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.13 -1.98 5.88 -104.59 -0.62 -2.59 16 3 C -0.11 -1.74 9.69 -39.61 -0.38 -2.12 16 4 C -0.18 -3.30 9.05 -39.38 -0.36 -3.66 16 5 C 0.17 3.38 6.50 -83.72 -0.54 2.84 16 6 N -0.52 -11.08 2.70 -116.31 -0.31 -11.39 16 7 C 0.21 4.64 4.19 -5.20 -0.02 4.62 16 8 C -0.55 -13.26 6.63 -34.44 -0.23 -13.49 16 9 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 10 C 0.07 1.80 5.08 -17.82 -0.09 1.71 16 11 N -0.88 -22.27 13.29 55.43 0.74 -21.53 16 12 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.60 12.64 7.53 -13.00 -0.10 12.54 16 17 O -0.55 -11.40 11.33 5.15 0.06 -11.35 16 18 C -0.10 -1.99 6.75 -81.98 -0.55 -2.54 16 19 C 0.07 1.49 9.12 -17.49 -0.16 1.33 16 20 N -0.49 -10.48 11.22 -14.61 -0.16 -10.64 16 21 C 0.38 6.77 9.01 -89.58 -0.81 5.96 16 22 O -0.44 -6.07 13.48 -17.32 -0.23 -6.30 16 23 N -0.44 -7.68 3.20 -122.13 -0.39 -8.07 16 24 C 0.07 0.96 10.66 59.85 0.64 1.59 16 25 C -0.14 -2.65 9.17 -39.39 -0.36 -3.01 16 26 C -0.10 -1.68 9.69 -39.61 -0.38 -2.06 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.62 8.09 -51.92 -0.42 0.20 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.18 3.49 4.51 -56.33 -0.25 3.24 16 32 H 0.06 1.33 5.15 -51.93 -0.27 1.07 16 33 H 0.06 1.34 6.12 -51.93 -0.32 1.02 16 34 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.25 6.01 2.80 -52.48 -0.15 5.87 16 36 H 0.40 3.22 9.06 45.56 0.41 3.63 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.10 1.44 6.53 -51.93 -0.34 1.11 16 40 H 0.14 2.77 6.19 -52.48 -0.32 2.44 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -28.77 338.17 -7.57 -36.34 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -3.73 Total: 12.85 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -3.60 Total: 0.28 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.13 Total: -51.63 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.18 Total: -17.65 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.77 -7.57 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865040559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.178 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds