Wall clock time and date at job start Tue Mar 31 2020 10:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00218 * 2 1 4 4 H 1.48503 * 109.46995 * 269.99994 * 3 2 1 5 5 H 1.48503 * 109.46930 * 29.99601 * 3 2 1 6 6 H 1.48495 * 109.47404 * 150.00249 * 3 2 1 7 7 C 1.38812 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00272 * 168.65102 * 7 2 1 9 9 N 1.36941 * 119.99778 * 348.64924 * 7 2 1 10 10 C 1.46917 * 120.63144 * 329.14240 * 9 7 2 11 11 C 1.53192 * 108.77555 * 233.62676 * 10 9 7 12 12 C 1.53045 * 109.31212 * 305.36167 * 11 10 9 13 13 N 1.46496 * 109.46186 * 181.38237 * 12 11 10 14 14 C 1.32186 * 119.99695 * 125.23147 * 13 12 11 15 15 C 1.46861 * 121.21199 * 353.87416 * 14 13 12 16 16 C 1.34676 * 118.53628 * 179.97438 * 15 14 13 17 17 N 1.35906 * 121.27175 * 0.02562 * 16 15 14 18 18 H 0.96995 * 118.59523 * 180.02562 * 17 16 15 19 19 C 1.35902 * 122.80113 * 359.73341 * 17 16 15 20 20 C 1.34666 * 121.27664 * 0.53719 * 19 17 16 21 21 C 1.50700 * 120.73161 * 179.75769 * 20 19 17 22 22 F 1.39896 * 109.47173 * 359.72393 * 21 20 19 23 23 F 1.39901 * 109.47133 * 239.71930 * 21 20 19 24 24 F 1.39905 * 109.46819 * 119.72241 * 21 20 19 25 25 C 1.53042 * 109.52384 * 61.36920 * 12 11 10 26 26 C 1.46931 * 120.62838 * 149.15259 * 9 7 2 27 27 H 0.97003 * 120.00095 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.59145 * 113.84006 * 10 9 7 29 29 H 1.09002 * 109.70551 * 353.48167 * 10 9 7 30 30 H 1.09001 * 109.50243 * 185.41487 * 11 10 9 31 31 H 1.09002 * 109.50161 * 65.30920 * 11 10 9 32 32 H 1.09001 * 109.45886 * 301.36080 * 12 11 10 33 33 H 1.08001 * 120.73551 * 0.02562 * 15 14 13 34 34 H 1.07994 * 119.35728 * 180.02562 * 16 15 14 35 35 H 1.07998 * 119.36641 * 180.27798 * 19 17 16 36 36 H 1.09007 * 109.49962 * 58.58288 * 25 12 11 37 37 H 1.09006 * 109.49973 * 178.67687 * 25 12 11 38 38 H 1.08995 * 109.58725 * 246.16084 * 26 9 7 39 39 H 1.09002 * 109.58548 * 6.44978 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0744 -1.2114 -0.1835 9 7 1.3456 -2.3764 0.2345 10 6 0.1622 -2.4062 1.1046 11 6 0.3747 -3.4664 2.1898 12 6 0.7034 -4.8075 1.5297 13 7 0.8748 -5.8312 2.5635 14 6 0.1631 -6.9441 2.5158 15 6 -0.8993 -7.1260 1.5184 16 6 -1.5906 -8.2818 1.5181 17 7 -1.3207 -9.2654 2.4162 18 1 -1.8425 -10.0823 2.3808 19 6 -0.3472 -9.1555 3.3581 20 6 0.4059 -8.0437 3.4588 21 6 1.4786 -7.9328 4.5115 22 9 1.5063 -9.1052 5.2743 23 9 1.2049 -6.8416 5.3431 24 9 2.7205 -7.7487 3.8941 25 6 1.9969 -4.6767 0.7223 26 6 1.8027 -3.6304 -0.3798 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7189 -2.6587 0.5147 29 1 0.0232 -1.4302 1.5696 30 1 -0.5338 -3.5663 2.7837 31 1 1.2005 -3.1663 2.8349 32 1 -0.1117 -5.0948 0.8656 33 1 -1.1209 -6.3503 0.8003 34 1 -2.3745 -8.4297 0.7901 35 1 -0.1770 -9.9740 4.0419 36 1 2.8073 -4.3650 1.3813 37 1 2.2433 -5.6381 0.2715 38 1 1.0554 -3.9827 -1.0907 39 1 2.7475 -3.4611 -0.8964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865524781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:08 Heat of formation + Delta-G solvation = -74.003145 kcal Electronic energy + Delta-G solvation = -26712.241346 eV Core-core repulsion = 22434.027004 eV Total energy + Delta-G solvation = -4278.214342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.90333 -47.50433 -47.24049 -40.25394 -37.70377 -35.23370 -33.02385 -32.30110 -30.75806 -29.74877 -28.83886 -26.09849 -25.10201 -23.02302 -22.38057 -21.93343 -20.76210 -19.64304 -18.92443 -18.31752 -18.18870 -17.22501 -16.76184 -16.17906 -15.92359 -14.81518 -14.72671 -14.58411 -14.18773 -14.16772 -13.84588 -13.77955 -13.47308 -13.46473 -13.44424 -13.34710 -12.98185 -12.81031 -12.46365 -12.16656 -11.80307 -11.34175 -11.13087 -10.93704 -10.86818 -10.64681 -10.19815 -10.11243 -10.08621 -9.85776 -9.47906 -9.39716 -8.69264 -8.40525 -7.37220 -6.53743 -5.70478 -3.16946 0.98681 1.39144 2.52368 2.98281 3.38810 3.42865 3.49142 3.52492 3.95378 4.01978 4.35700 4.48098 4.56298 4.68760 4.78981 5.06975 5.34887 5.45532 5.53773 5.56643 5.72021 5.76352 5.85855 6.04721 6.28752 6.36243 6.48029 6.63758 6.66402 6.76452 6.78830 6.86732 6.94332 6.97436 7.13275 7.51228 7.76997 7.86935 8.29875 8.56131 9.30801 9.92827 10.51282 11.37827 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.003384 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.241926 B = 8272.987796 C = 8897.535308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.124 4.124 12 C 0.080 3.920 13 N -0.522 5.522 14 C 0.221 3.779 15 C -0.219 4.219 16 C 0.097 3.903 17 N -0.612 5.612 18 H 0.418 0.582 19 C 0.181 3.819 20 C -0.262 4.262 21 C 0.536 3.464 22 F -0.194 7.194 23 F -0.170 7.170 24 F -0.170 7.170 25 C -0.115 4.115 26 C 0.148 3.852 27 H 0.253 0.747 28 H 0.014 0.986 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.355 -24.189 6.164 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.164 4.164 12 C -0.029 4.029 13 N -0.234 5.234 14 C 0.038 3.962 15 C -0.245 4.245 16 C -0.027 4.027 17 N -0.220 5.220 18 H 0.253 0.747 19 C 0.051 3.949 20 C -0.274 4.274 21 C 0.481 3.519 22 F -0.175 7.175 23 F -0.151 7.151 24 F -0.152 7.152 25 C -0.155 4.155 26 C 0.021 3.979 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.703 -23.336 6.602 24.704 hybrid contribution -0.314 0.451 -0.481 0.731 sum -5.017 -22.885 6.121 24.215 Atomic orbital electron populations 1.69979 1.05263 1.25332 1.54606 1.25129 0.95388 0.98327 1.00725 0.86271 0.79145 0.83582 0.77625 1.21425 1.21605 1.20440 1.19197 0.91018 0.84096 1.43581 0.91856 1.44020 1.32182 1.03164 1.52136 1.20785 0.88023 0.97177 0.89192 1.22204 1.00034 0.94418 0.99706 1.21735 0.97451 0.92122 0.91625 1.73098 1.24839 1.01050 1.24397 1.20679 0.92515 0.91658 0.91355 1.22699 0.99851 0.98528 1.03419 1.21419 0.99482 0.88869 0.92927 1.40808 1.33000 1.18898 1.29249 0.74703 1.21184 0.86632 0.97214 0.89860 1.20073 1.04991 0.97790 1.04535 1.17537 0.81238 0.73070 0.80017 1.93102 1.96776 1.49564 1.78080 1.93227 1.93624 1.55016 1.73242 1.93223 1.44433 1.94929 1.82586 1.22022 0.96701 0.98506 0.98294 1.20903 0.97606 0.86974 0.92387 0.93712 0.96748 0.89162 0.93852 0.92059 0.93812 0.83094 0.82200 0.81231 0.91674 0.93722 0.96770 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.02 11.05 55.49 0.61 -26.40 16 2 C 0.00 0.07 5.04 -17.43 -0.09 -0.02 16 3 Si 0.90 22.39 29.57 -169.99 -5.03 17.36 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.25 -7.15 9.58 -15.06 -0.14 -7.29 16 8 H 0.06 1.79 7.85 -52.49 -0.41 1.37 16 9 N -0.59 -15.74 2.99 -172.32 -0.51 -16.26 16 10 C 0.17 4.44 5.26 -3.72 -0.02 4.42 16 11 C -0.12 -2.74 5.68 -26.61 -0.15 -2.89 16 12 C 0.08 1.59 2.69 -67.89 -0.18 1.41 16 13 N -0.52 -9.81 9.61 -49.32 -0.47 -10.28 16 14 C 0.22 3.35 6.91 -80.74 -0.56 2.79 16 15 C -0.22 -2.59 9.45 -37.36 -0.35 -2.95 16 16 C 0.10 0.68 11.13 -17.01 -0.19 0.49 16 17 N -0.61 -3.03 5.22 -13.14 -0.07 -3.10 16 18 H 0.42 0.28 8.88 -40.82 -0.36 -0.08 16 19 C 0.18 1.30 10.58 -17.01 -0.18 1.12 16 20 C -0.26 -3.21 5.51 -102.40 -0.56 -3.78 16 21 C 0.54 7.29 3.07 36.01 0.11 7.40 16 22 F -0.19 -2.11 15.98 2.25 0.04 -2.07 16 23 F -0.17 -2.71 17.15 2.25 0.04 -2.67 16 24 F -0.17 -2.69 17.15 2.25 0.04 -2.65 16 25 C -0.12 -2.36 5.68 -26.61 -0.15 -2.51 16 26 C 0.15 3.35 6.52 -3.71 -0.02 3.33 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 2.55 6.09 -51.93 -0.32 2.24 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.04 0.83 5.26 -51.93 -0.27 0.56 16 33 H 0.15 1.90 5.95 -52.49 -0.31 1.59 16 34 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.17 0.63 7.10 -52.49 -0.37 0.26 16 36 H 0.06 1.43 8.14 -51.92 -0.42 1.01 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -35.43 331.43 -7.41 -42.84 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -4.56 Total: -3.30 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.49 Total: 1.53 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.44 Total: -56.04 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.11 Total: -7.39 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.43 -7.41 -42.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865524781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.159 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds