Wall clock time and date at job start Tue Mar 31 2020 10:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00218 * 2 1 4 4 H 1.48503 * 109.46995 * 269.99994 * 3 2 1 5 5 H 1.48503 * 109.46930 * 29.99601 * 3 2 1 6 6 H 1.48495 * 109.47404 * 150.00249 * 3 2 1 7 7 C 1.38812 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00272 * 168.65102 * 7 2 1 9 9 N 1.36941 * 119.99778 * 348.64924 * 7 2 1 10 10 C 1.46917 * 120.63144 * 329.14240 * 9 7 2 11 11 C 1.53192 * 108.77555 * 233.62676 * 10 9 7 12 12 C 1.53045 * 109.31212 * 305.36167 * 11 10 9 13 13 N 1.46496 * 109.46186 * 181.38237 * 12 11 10 14 14 C 1.32186 * 119.99695 * 125.23147 * 13 12 11 15 15 C 1.46861 * 121.21199 * 353.87416 * 14 13 12 16 16 C 1.34676 * 118.53628 * 179.97438 * 15 14 13 17 17 N 1.35906 * 121.27175 * 0.02562 * 16 15 14 18 18 H 0.96995 * 118.59523 * 180.02562 * 17 16 15 19 19 C 1.35902 * 122.80113 * 359.73341 * 17 16 15 20 20 C 1.34666 * 121.27664 * 0.53719 * 19 17 16 21 21 C 1.50700 * 120.73161 * 179.75769 * 20 19 17 22 22 F 1.39896 * 109.47173 * 359.72393 * 21 20 19 23 23 F 1.39901 * 109.47133 * 239.71930 * 21 20 19 24 24 F 1.39905 * 109.46819 * 119.72241 * 21 20 19 25 25 C 1.53042 * 109.52384 * 61.36920 * 12 11 10 26 26 C 1.46931 * 120.62838 * 149.15259 * 9 7 2 27 27 H 0.97003 * 120.00095 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.59145 * 113.84006 * 10 9 7 29 29 H 1.09002 * 109.70551 * 353.48167 * 10 9 7 30 30 H 1.09001 * 109.50243 * 185.41487 * 11 10 9 31 31 H 1.09002 * 109.50161 * 65.30920 * 11 10 9 32 32 H 1.09001 * 109.45886 * 301.36080 * 12 11 10 33 33 H 1.08001 * 120.73551 * 0.02562 * 15 14 13 34 34 H 1.07994 * 119.35728 * 180.02562 * 16 15 14 35 35 H 1.07998 * 119.36641 * 180.27798 * 19 17 16 36 36 H 1.09007 * 109.49962 * 58.58288 * 25 12 11 37 37 H 1.09006 * 109.49973 * 178.67687 * 25 12 11 38 38 H 1.08995 * 109.58725 * 246.16084 * 26 9 7 39 39 H 1.09002 * 109.58548 * 6.44978 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 0.0005 8 1 3.0744 -1.2114 -0.1835 9 7 1.3456 -2.3764 0.2345 10 6 0.1622 -2.4062 1.1046 11 6 0.3747 -3.4664 2.1898 12 6 0.7034 -4.8075 1.5297 13 7 0.8748 -5.8312 2.5635 14 6 0.1631 -6.9441 2.5158 15 6 -0.8993 -7.1260 1.5184 16 6 -1.5906 -8.2818 1.5181 17 7 -1.3207 -9.2654 2.4162 18 1 -1.8425 -10.0823 2.3808 19 6 -0.3472 -9.1555 3.3581 20 6 0.4059 -8.0437 3.4588 21 6 1.4786 -7.9328 4.5115 22 9 1.5063 -9.1052 5.2743 23 9 1.2049 -6.8416 5.3431 24 9 2.7205 -7.7487 3.8941 25 6 1.9969 -4.6767 0.7223 26 6 1.8027 -3.6304 -0.3798 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7189 -2.6587 0.5147 29 1 0.0232 -1.4302 1.5696 30 1 -0.5338 -3.5663 2.7837 31 1 1.2005 -3.1663 2.8349 32 1 -0.1117 -5.0948 0.8656 33 1 -1.1209 -6.3503 0.8003 34 1 -2.3745 -8.4297 0.7901 35 1 -0.1770 -9.9740 4.0419 36 1 2.8073 -4.3650 1.3813 37 1 2.2433 -5.6381 0.2715 38 1 1.0554 -3.9827 -1.0907 39 1 2.7475 -3.4611 -0.8964 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865524781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:07 Heat of formation + Delta-G solvation = -98.963877 kcal Electronic energy + Delta-G solvation = -26713.323725 eV Core-core repulsion = 22434.027004 eV Total energy + Delta-G solvation = -4279.296721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.92573 -48.49407 -48.36112 -41.03467 -39.37124 -36.61966 -34.53707 -33.41223 -32.29497 -31.55262 -30.27187 -27.05367 -26.89997 -24.45265 -23.77793 -23.33349 -22.17881 -20.73891 -20.29009 -19.32971 -19.24954 -18.72706 -18.04268 -17.27108 -16.95019 -16.74423 -15.87370 -15.55880 -15.44258 -15.35478 -15.19380 -15.09942 -14.85667 -14.83762 -14.58287 -14.54380 -14.50935 -14.27528 -13.94652 -13.41412 -13.14757 -12.91510 -12.75531 -12.68250 -12.60367 -12.38255 -12.08511 -11.99787 -11.82544 -11.28958 -11.13749 -10.79512 -10.57359 -9.85644 -8.66905 -8.36268 -7.88440 -5.39250 0.21227 0.57392 1.44614 1.46637 1.56733 1.77469 2.17065 2.44963 2.49514 3.05839 3.12813 3.26946 3.44560 3.64989 3.65458 3.86461 3.94586 4.18403 4.22432 4.24075 4.40871 4.48939 4.53238 4.65985 4.77155 4.83398 4.92043 4.98610 5.09592 5.16470 5.20116 5.32786 5.45360 5.59052 5.62863 5.72465 5.90262 6.38983 6.40673 7.13090 7.21422 7.81975 8.36545 9.17920 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022055 B = 0.003384 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.241926 B = 8272.987796 C = 8897.535308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.269 4.269 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.187 3.813 11 C -0.109 4.109 12 C 0.096 3.904 13 N -0.598 5.598 14 C 0.233 3.767 15 C -0.278 4.278 16 C 0.153 3.847 17 N -0.582 5.582 18 H 0.449 0.551 19 C 0.229 3.771 20 C -0.315 4.315 21 C 0.535 3.465 22 F -0.177 7.177 23 F -0.192 7.192 24 F -0.190 7.190 25 C -0.102 4.102 26 C 0.148 3.852 27 H 0.251 0.749 28 H 0.002 0.998 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.136 0.864 34 H 0.213 0.787 35 H 0.217 0.783 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 -28.198 6.024 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.399 4.399 8 H 0.080 0.920 9 N -0.335 5.335 10 C 0.060 3.940 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.314 5.314 14 C 0.054 3.946 15 C -0.305 4.305 16 C 0.026 3.974 17 N -0.189 5.189 18 H 0.290 0.710 19 C 0.096 3.904 20 C -0.326 4.326 21 C 0.480 3.520 22 F -0.158 7.158 23 F -0.173 7.173 24 F -0.172 7.172 25 C -0.141 4.141 26 C 0.022 3.978 27 H 0.060 0.940 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.229 0.771 35 H 0.233 0.767 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.386 -27.439 6.457 28.903 hybrid contribution 0.004 1.289 -0.402 1.351 sum -6.382 -26.150 6.054 27.590 Atomic orbital electron populations 1.70141 1.06654 1.25911 1.55398 1.25918 0.96258 1.01562 1.00587 0.85212 0.77884 0.79155 0.77803 1.20529 1.21549 1.19858 1.19515 0.91330 0.85399 1.43670 0.91978 1.44257 1.32274 1.03978 1.52942 1.20514 0.87506 0.96419 0.89536 1.21944 0.99149 0.95555 0.98193 1.21330 0.96616 0.91487 0.91962 1.73097 1.29507 1.03104 1.25667 1.21331 0.91144 0.90869 0.91229 1.22544 1.02032 1.01165 1.04758 1.22046 0.97247 0.86544 0.91530 1.41142 1.31358 1.19428 1.26970 0.70989 1.21766 0.83879 0.95991 0.88778 1.19975 1.07654 0.99289 1.05715 1.17734 0.81077 0.72917 0.80294 1.93118 1.96712 1.48234 1.77748 1.93179 1.93708 1.56433 1.73994 1.93178 1.45964 1.95098 1.82954 1.21821 0.96820 0.98266 0.97223 1.21014 0.97533 0.86082 0.93175 0.93958 0.98039 0.92651 0.93351 0.94664 0.93352 0.84667 0.77064 0.76659 0.94151 0.91801 0.96103 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 11.05 21.65 0.24 -57.58 16 2 C -0.05 -2.83 5.04 84.86 0.43 -2.41 16 3 Si 0.97 47.27 29.57 68.60 2.03 49.30 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.27 -16.05 9.58 84.03 0.81 -15.24 16 8 H 0.06 3.63 7.85 -2.91 -0.02 3.61 16 9 N -0.61 -34.12 2.99 -699.09 -2.09 -36.21 16 10 C 0.19 10.12 5.26 86.36 0.45 10.58 16 11 C -0.11 -5.17 5.68 30.67 0.17 -4.99 16 12 C 0.10 4.03 2.69 45.02 0.12 4.15 16 13 N -0.60 -23.47 9.61 -309.96 -2.98 -26.44 16 14 C 0.23 6.93 6.91 43.61 0.30 7.23 16 15 C -0.28 -6.01 9.45 23.71 0.22 -5.78 16 16 C 0.15 1.25 11.13 83.24 0.93 2.18 16 17 N -0.58 -1.68 5.22 -195.48 -1.02 -2.70 16 18 H 0.45 -3.26 8.88 -92.71 -0.82 -4.08 16 19 C 0.23 2.02 10.58 83.24 0.88 2.91 16 20 C -0.31 -7.02 5.51 -18.42 -0.10 -7.12 16 21 C 0.53 14.20 3.07 71.24 0.22 14.42 16 22 F -0.18 -3.42 15.98 44.97 0.72 -2.71 16 23 F -0.19 -6.30 17.15 44.97 0.77 -5.53 16 24 F -0.19 -6.15 17.15 44.97 0.77 -5.38 16 25 C -0.10 -4.35 5.68 30.67 0.17 -4.18 16 26 C 0.15 6.95 6.52 86.36 0.56 7.51 16 27 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 29 H 0.06 3.35 6.09 -2.39 -0.01 3.33 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.92 5.26 -2.39 -0.01 1.91 16 33 H 0.14 3.35 5.95 -2.91 -0.02 3.33 16 34 H 0.21 -0.25 8.06 -2.91 -0.02 -0.27 16 35 H 0.22 0.04 7.10 -2.91 -0.02 0.02 16 36 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 Total: -1.00 -86.00 331.43 3.89 -82.11 By element: Atomic # 1 Polarization: -4.40 SS G_CDS: 0.28 Total: -4.12 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.17 Total: 9.25 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.85 Total: -122.93 kcal Atomic # 9 Polarization: -15.87 SS G_CDS: 2.26 Total: -13.61 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -86.00 3.89 -82.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865524781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.852 kcal (2) G-P(sol) polarization free energy of solvation -86.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds