Wall clock time and date at job start Tue Mar 31 2020 10:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47257 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46924 * 300.00371 * 3 2 1 6 6 H 1.48502 * 109.46881 * 59.99900 * 3 2 1 7 7 C 1.38813 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99985 * 163.06736 * 7 2 1 9 9 N 1.36936 * 119.99890 * 343.07205 * 7 2 1 10 10 C 1.46926 * 120.63256 * 331.84378 * 9 7 2 11 11 C 1.53184 * 108.78079 * 233.58879 * 10 9 7 12 12 C 1.53046 * 109.31457 * 305.36663 * 11 10 9 13 13 O 1.42894 * 109.46385 * 181.38151 * 12 11 10 14 14 C 1.34985 * 117.00063 * 149.99933 * 13 12 11 15 15 O 1.21700 * 119.99979 * 359.97438 * 14 13 12 16 16 C 1.41805 * 120.00336 * 180.02562 * 14 13 12 17 17 N 1.32595 * 125.57273 * 359.69621 * 16 14 13 18 18 C 1.31958 * 109.86886 * 179.88359 * 17 16 14 19 19 C 1.39447 * 107.94480 * 0.37264 * 18 17 16 20 20 C 1.40380 * 133.39936 * 179.73425 * 19 18 17 21 21 C 1.36359 * 119.18740 * 180.02562 * 20 19 18 22 22 C 1.40296 * 119.58243 * 0.02562 * 21 20 19 23 23 C 1.35197 * 120.38190 * 359.97438 * 22 21 20 24 24 N 1.36145 * 120.59908 * 0.03137 * 23 22 21 25 25 C 1.53042 * 109.53497 * 61.36202 * 12 11 10 26 26 C 1.46926 * 120.63249 * 151.82789 * 9 7 2 27 27 H 0.96999 * 120.00736 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.58577 * 113.79940 * 10 9 7 29 29 H 1.09003 * 109.70242 * 353.45032 * 10 9 7 30 30 H 1.08997 * 109.50651 * 185.41130 * 11 10 9 31 31 H 1.09000 * 109.52379 * 65.32983 * 11 10 9 32 32 H 1.09004 * 109.45654 * 301.35632 * 12 11 10 33 33 H 1.08002 * 126.02571 * 180.14478 * 18 17 16 34 34 H 1.07998 * 120.40790 * 0.06618 * 20 19 18 35 35 H 1.08002 * 120.21064 * 179.97438 * 21 20 19 36 36 H 1.07998 * 119.81349 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.69882 * 180.02562 * 23 22 21 38 38 H 1.08990 * 109.50051 * 58.58960 * 25 12 11 39 39 H 1.09005 * 109.49517 * 178.68750 * 25 12 11 40 40 H 1.09002 * 109.58483 * 246.20006 * 26 9 7 41 41 H 1.08999 * 109.58576 * 6.47847 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2719 9 7 1.3701 -2.3622 0.3464 10 6 0.2261 -2.3398 1.2681 11 6 0.4975 -3.3188 2.4147 12 6 0.8120 -4.7006 1.8368 13 8 1.0341 -5.6239 2.9045 14 6 0.7133 -6.9148 2.6750 15 8 0.2568 -7.2459 1.5966 16 6 0.9072 -7.8851 3.6909 17 7 1.3990 -7.6489 4.8993 18 6 1.4424 -8.7706 5.5930 19 6 0.9570 -9.7961 4.7823 20 6 0.7759 -11.1747 4.9756 21 6 0.2655 -11.9272 3.9595 22 6 -0.0680 -11.3133 2.7429 23 6 0.1136 -9.9841 2.5753 24 7 0.6224 -9.2218 3.5821 25 6 2.0675 -4.6171 0.9655 26 6 1.8138 -3.6529 -0.1975 27 1 -0.4851 0.8400 0.0004 28 1 -0.6770 -2.6405 0.7370 29 1 0.0967 -1.3345 1.6689 30 1 -0.3830 -3.3836 3.0539 31 1 1.3470 -2.9674 3.0003 32 1 -0.0281 -5.0407 1.2313 33 1 1.7954 -8.8764 6.6082 34 1 1.0369 -11.6335 5.9178 35 1 0.1197 -12.9894 4.0901 36 1 -0.4721 -11.9058 1.9354 37 1 -0.1473 -9.5228 1.6343 38 1 2.9024 -4.2533 1.5642 39 1 2.3043 -5.6062 0.5731 40 1 1.0402 -4.0606 -0.8482 41 1 2.7332 -3.5131 -0.7662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870242369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:23 Heat of formation + Delta-G solvation = 31.112609 kcal Electronic energy + Delta-G solvation = -25667.517258 eV Core-core repulsion = 21935.717817 eV Total energy + Delta-G solvation = -3731.799441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.31917 -40.32106 -37.96071 -37.47074 -35.91569 -33.78886 -32.69192 -31.48115 -30.37695 -29.71966 -28.99723 -25.61904 -24.54573 -24.13540 -22.61913 -22.35588 -22.03195 -20.80627 -19.35313 -18.27408 -17.55476 -16.97426 -16.88181 -16.71120 -16.21579 -15.72666 -15.35775 -15.13245 -14.79740 -14.31060 -13.92314 -13.54548 -13.28687 -13.05829 -12.83149 -12.79518 -12.42087 -12.36956 -12.25758 -11.50769 -11.26307 -11.20839 -11.06552 -10.77200 -10.72736 -10.67787 -10.63001 -10.29729 -10.12936 -9.88255 -9.79121 -9.62840 -9.39955 -8.47618 -7.98173 -6.70700 -5.79727 -3.22257 0.31847 0.34814 1.81290 1.90572 2.94207 3.11687 3.18549 3.38930 3.46649 3.49290 3.99770 4.11825 4.31214 4.41661 4.48185 4.50182 4.61123 5.06373 5.18459 5.28501 5.33770 5.39259 5.44347 5.49967 5.56557 5.67076 5.76174 6.00433 6.03039 6.11083 6.26842 6.34015 6.44442 6.53614 6.55201 6.63020 6.75385 6.81958 6.97114 7.31129 7.32598 7.60982 7.80293 7.92137 8.43999 9.19930 9.82727 10.39521 11.29564 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.037964 B = 0.002608 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.366194 B =10734.324515 C =11045.495013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.134 4.134 12 C 0.096 3.904 13 O -0.322 6.322 14 C 0.557 3.443 15 O -0.521 6.521 16 C 0.087 3.913 17 N -0.368 5.368 18 C -0.012 4.012 19 C 0.032 3.968 20 C -0.082 4.082 21 C -0.107 4.107 22 C -0.132 4.132 23 C 0.064 3.936 24 N -0.315 5.315 25 C -0.147 4.147 26 C 0.150 3.850 27 H 0.254 0.746 28 H 0.022 0.978 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.193 0.807 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.156 0.844 37 H 0.181 0.819 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -25.545 10.083 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.049 3.951 11 C -0.174 4.174 12 C 0.041 3.959 13 O -0.235 6.235 14 C 0.403 3.597 15 O -0.411 6.411 16 C -0.156 4.156 17 N -0.085 5.085 18 C -0.176 4.176 19 C -0.081 4.081 20 C -0.102 4.102 21 C -0.128 4.128 22 C -0.152 4.152 23 C -0.059 4.059 24 N 0.015 4.985 25 C -0.187 4.187 26 C 0.023 3.977 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.210 0.790 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.173 0.827 37 H 0.198 0.802 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.292 -24.400 9.769 26.284 hybrid contribution 0.074 -0.048 -0.393 0.402 sum -0.218 -24.448 9.376 26.185 Atomic orbital electron populations 1.70025 1.05291 1.25526 1.53958 1.25068 0.95318 0.98513 1.00754 0.86203 0.79393 0.83796 0.77274 1.20205 1.21724 1.21481 1.19237 0.92652 0.84673 1.41623 0.91480 1.44125 1.35801 1.01697 1.49906 1.20811 0.88872 0.97963 0.87504 1.22473 1.01456 0.92418 1.01007 1.22664 0.99077 0.87597 0.86547 1.86341 1.76213 1.15971 1.45020 1.17572 0.75147 0.82819 0.84208 1.90871 1.43534 1.81306 1.25407 1.19899 1.17983 0.81407 0.96353 1.70136 1.10052 1.27675 1.00610 1.22925 1.07719 0.85959 1.00987 1.20145 1.05579 0.95313 0.87058 1.20619 0.99424 0.89226 1.00896 1.21252 0.97950 1.01031 0.92583 1.21042 1.01863 0.92861 0.99464 1.22198 0.98303 0.91945 0.93492 1.42425 1.37027 1.07818 1.11274 1.22509 0.97279 0.99951 0.98960 1.20850 0.98154 0.86435 0.92238 0.93583 0.95998 0.88511 0.92292 0.91254 0.90361 0.78972 0.82762 0.83848 0.82665 0.80187 0.91199 0.92790 0.96083 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -15.25 2.99 -172.32 -0.52 -15.76 16 10 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 11 C -0.13 -2.77 5.73 -26.61 -0.15 -2.92 16 12 C 0.10 1.89 2.37 -26.69 -0.06 1.83 16 13 O -0.32 -6.14 9.70 -41.28 -0.40 -6.54 16 14 C 0.56 9.89 7.70 32.09 0.25 10.14 16 15 O -0.52 -9.55 14.42 -19.42 -0.28 -9.83 16 16 C 0.09 1.36 7.64 -155.64 -1.19 0.17 16 17 N -0.37 -5.58 11.13 -11.82 -0.13 -5.72 16 18 C -0.01 -0.13 12.00 -17.05 -0.20 -0.33 16 19 C 0.03 0.32 6.80 -84.21 -0.57 -0.25 16 20 C -0.08 -0.51 10.11 -39.45 -0.40 -0.91 16 21 C -0.11 -0.56 10.08 -39.49 -0.40 -0.95 16 22 C -0.13 -0.84 9.98 -39.89 -0.40 -1.24 16 23 C 0.06 0.63 10.47 -16.72 -0.18 0.46 16 24 N -0.32 -3.95 2.95 -60.23 -0.18 -4.13 16 25 C -0.15 -2.91 5.70 -26.61 -0.15 -3.06 16 26 C 0.15 3.31 6.52 -3.71 -0.02 3.28 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 2.60 6.07 -51.93 -0.31 2.28 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.60 7.11 -51.93 -0.37 1.23 16 33 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.18 1.84 6.71 -52.48 -0.35 1.49 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -33.71 343.28 -9.70 -43.41 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.23 Total: -0.94 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.73 Total: 3.27 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.20 Total: -51.36 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.68 Total: -16.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.71 -9.70 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870242369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.519 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds